data_6ULX # _model_server_result.job_id Lnb1spzGzVjP0ZocBy6MYw _model_server_result.datetime_utc '2024-10-12 21:17:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ulx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6ULX # _exptl.entry_id 6ULX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.348 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-{(S)-hydroxy[(4-methyl-2-oxopentanoyl)oxy]phosphoryl}adenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ULX _cell.length_a 103.274 _cell.length_b 103.274 _cell.length_c 172.747 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ULX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H22 N5 O9 P' _chem_comp.formula_weight 459.348 _chem_comp.id QA7 _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-{(S)-hydroxy[(4-methyl-2-oxopentanoyl)oxy]phosphoryl}adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 C12 QA7 sing 277 n n O26 C13 QA7 sing 278 n n C13 C12 QA7 sing 279 n n C13 C14 QA7 sing 280 n n C12 C11 QA7 sing 281 n n C11 C10 QA7 sing 282 n n C11 O25 QA7 sing 283 n n C14 O25 QA7 sing 284 n n C14 N15 QA7 sing 285 n n N22 C21 QA7 doub 286 n y N22 C23 QA7 sing 287 n y C21 N20 QA7 sing 288 n y C10 O09 QA7 sing 289 n n C23 N15 QA7 sing 290 n y C23 C18 QA7 doub 291 n y N15 C16 QA7 sing 292 n y O09 P08 QA7 sing 293 n n O28 P08 QA7 doub 294 n n N20 C19 QA7 doub 295 n y C18 C19 QA7 sing 296 n y C18 N17 QA7 sing 297 n y C16 N17 QA7 doub 298 n y C19 N24 QA7 sing 299 n n P08 O29 QA7 sing 300 n n P08 O07 QA7 sing 301 n n O07 C06 QA7 sing 302 n n C06 O30 QA7 doub 303 n n C06 C05 QA7 sing 304 n n O31 C05 QA7 doub 305 n n C05 C04 QA7 sing 306 n n C04 C02 QA7 sing 307 n n C02 C03 QA7 sing 308 n n C02 C01 QA7 sing 309 n n C01 H013 QA7 sing 310 n n C01 H011 QA7 sing 311 n n C01 H012 QA7 sing 312 n n C02 H021 QA7 sing 313 n n C03 H033 QA7 sing 314 n n C03 H031 QA7 sing 315 n n C03 H032 QA7 sing 316 n n C04 H042 QA7 sing 317 n n C04 H041 QA7 sing 318 n n C10 H102 QA7 sing 319 n n C10 H101 QA7 sing 320 n n C11 H111 QA7 sing 321 n n C12 H121 QA7 sing 322 n n C13 H131 QA7 sing 323 n n C14 H141 QA7 sing 324 n n C16 H161 QA7 sing 325 n n C21 H211 QA7 sing 326 n n N24 H242 QA7 sing 327 n n N24 H241 QA7 sing 328 n n O26 H261 QA7 sing 329 n n O27 H271 QA7 sing 330 n n O29 H1 QA7 sing 331 n n # _atom_sites.entry_id 6ULX _atom_sites.fract_transf_matrix[1][1] 0.009683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QA7 A 1 701 701 QA7 AKD . C 3 SO4 A 1 702 1 SO4 SO4 . D 3 SO4 A 1 703 2 SO4 SO4 . E 3 SO4 A 1 704 3 SO4 SO4 . F 3 SO4 A 1 705 4 SO4 SO4 . G 3 SO4 A 1 706 5 SO4 SO4 . H 3 SO4 A 1 707 6 SO4 SO4 . I 3 SO4 A 1 708 7 SO4 SO4 . J 3 SO4 A 1 709 8 SO4 SO4 . K 3 SO4 A 1 710 10 SO4 SO4 . L 3 SO4 A 1 711 11 SO4 SO4 . M 3 SO4 A 1 712 12 SO4 SO4 . N 3 SO4 A 1 713 13 SO4 SO4 . O 3 SO4 A 1 714 14 SO4 SO4 . P 3 SO4 A 1 715 15 SO4 SO4 . Q 3 SO4 A 1 716 16 SO4 SO4 . R 3 SO4 A 1 717 17 SO4 SO4 . S 3 SO4 A 1 718 18 SO4 SO4 . T 4 HOH A 1 801 45 HOH HOH . T 4 HOH A 2 802 22 HOH HOH . T 4 HOH A 3 803 6 HOH HOH . T 4 HOH A 4 804 3 HOH HOH . T 4 HOH A 5 805 7 HOH HOH . T 4 HOH A 6 806 31 HOH HOH . T 4 HOH A 7 807 38 HOH HOH . T 4 HOH A 8 808 2 HOH HOH . T 4 HOH A 9 809 55 HOH HOH . T 4 HOH A 10 810 23 HOH HOH . T 4 HOH A 11 811 54 HOH HOH . T 4 HOH A 12 812 19 HOH HOH . T 4 HOH A 13 813 4 HOH HOH . T 4 HOH A 14 814 24 HOH HOH . T 4 HOH A 15 815 15 HOH HOH . T 4 HOH A 16 816 33 HOH HOH . T 4 HOH A 17 817 61 HOH HOH . T 4 HOH A 18 818 32 HOH HOH . T 4 HOH A 19 819 47 HOH HOH . T 4 HOH A 20 820 17 HOH HOH . T 4 HOH A 21 821 18 HOH HOH . T 4 HOH A 22 822 56 HOH HOH . T 4 HOH A 23 823 10 HOH HOH . T 4 HOH A 24 824 41 HOH HOH . T 4 HOH A 25 825 28 HOH HOH . T 4 HOH A 26 826 13 HOH HOH . T 4 HOH A 27 827 27 HOH HOH . T 4 HOH A 28 828 1 HOH HOH . T 4 HOH A 29 829 48 HOH HOH . T 4 HOH A 30 830 36 HOH HOH . T 4 HOH A 31 831 52 HOH HOH . T 4 HOH A 32 832 11 HOH HOH . T 4 HOH A 33 833 26 HOH HOH . T 4 HOH A 34 834 21 HOH HOH . T 4 HOH A 35 835 39 HOH HOH . T 4 HOH A 36 836 5 HOH HOH . T 4 HOH A 37 837 44 HOH HOH . T 4 HOH A 38 838 35 HOH HOH . T 4 HOH A 39 839 25 HOH HOH . T 4 HOH A 40 840 20 HOH HOH . T 4 HOH A 41 841 12 HOH HOH . T 4 HOH A 42 842 34 HOH HOH . T 4 HOH A 43 843 29 HOH HOH . T 4 HOH A 44 844 16 HOH HOH . T 4 HOH A 45 845 14 HOH HOH . T 4 HOH A 46 846 51 HOH HOH . T 4 HOH A 47 847 30 HOH HOH . T 4 HOH A 48 848 40 HOH HOH . T 4 HOH A 49 849 49 HOH HOH . T 4 HOH A 50 850 9 HOH HOH . T 4 HOH A 51 851 59 HOH HOH . T 4 HOH A 52 852 42 HOH HOH . T 4 HOH A 53 853 8 HOH HOH . T 4 HOH A 54 854 43 HOH HOH . T 4 HOH A 55 855 53 HOH HOH . T 4 HOH A 56 856 50 HOH HOH . T 4 HOH A 57 857 57 HOH HOH . T 4 HOH A 58 858 62 HOH HOH . T 4 HOH A 59 859 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QA7 . . . B 2 4.943 -25.56 -25.088 1 40.59 ? C01 QA7 701 A 1 HETATM 2 C C02 QA7 . . . B 2 5.193 -26.591 -26.182 1 44.5 ? C02 QA7 701 A 1 HETATM 3 C C03 QA7 . . . B 2 5.198 -27.975 -25.535 1 46.68 ? C03 QA7 701 A 1 HETATM 4 C C04 QA7 . . . B 2 6.452 -26.283 -26.974 1 43.37 ? C04 QA7 701 A 1 HETATM 5 C C05 QA7 . . . B 2 6.409 -24.876 -27.579 1 44.21 ? C05 QA7 701 A 1 HETATM 6 C C06 QA7 . . . B 2 7.677 -24.254 -28.143 1 43.34 ? C06 QA7 701 A 1 HETATM 7 C C10 QA7 . . . B 2 8.468 -24.38 -31.542 1 47.55 ? C10 QA7 701 A 1 HETATM 8 C C11 QA7 . . . B 2 9.219 -25.374 -32.157 1 43.22 ? C11 QA7 701 A 1 HETATM 9 C C12 QA7 . . . B 2 8.317 -26.306 -33.098 1 38.06 ? C12 QA7 701 A 1 HETATM 10 C C13 QA7 . . . B 2 8.96 -27.35 -33.202 1 40.76 ? C13 QA7 701 A 1 HETATM 11 C C14 QA7 . . . B 2 9.753 -27.531 -31.732 1 39.08 ? C14 QA7 701 A 1 HETATM 12 C C16 QA7 . . . B 2 8.181 -28.212 -29.941 1 37.87 ? C16 QA7 701 A 1 HETATM 13 C C18 QA7 . . . B 2 8.439 -30.38 -30.001 1 37.42 ? C18 QA7 701 A 1 HETATM 14 C C19 QA7 . . . B 2 8.449 -31.796 -29.852 1 36.85 ? C19 QA7 701 A 1 HETATM 15 C C21 QA7 . . . B 2 9.999 -31.963 -31.548 1 39.05 ? C21 QA7 701 A 1 HETATM 16 C C23 QA7 . . . B 2 9.254 -29.836 -30.952 1 35.88 ? C23 QA7 701 A 1 HETATM 17 N N15 QA7 . . . B 2 9.081 -28.488 -30.901 1 37.1 ? N15 QA7 701 A 1 HETATM 18 N N17 QA7 . . . B 2 7.778 -29.367 -29.384 1 33.68 ? N17 QA7 701 A 1 HETATM 19 N N20 QA7 . . . B 2 9.225 -32.539 -30.629 1 39.01 ? N20 QA7 701 A 1 HETATM 20 N N22 QA7 . . . B 2 10.034 -30.651 -31.715 1 38.64 ? N22 QA7 701 A 1 HETATM 21 N N24 QA7 . . . B 2 7.595 -32.419 -28.867 1 34.04 ? N24 QA7 701 A 1 HETATM 22 O O07 QA7 . . . B 2 7.697 -22.923 -28.644 1 50.98 ? O07 QA7 701 A 1 HETATM 23 O O09 QA7 . . . B 2 9.331 -23.558 -30.81 1 54.96 ? O09 QA7 701 A 1 HETATM 24 O O25 QA7 . . . B 2 9.772 -26.377 -31.155 1 41.48 ? O25 QA7 701 A 1 HETATM 25 O O26 QA7 . . . B 2 10.006 -27.313 -34.248 1 40.12 ? O26 QA7 701 A 1 HETATM 26 O O27 QA7 . . . B 2 8.068 -25.623 -34.416 1 42.82 ? O27 QA7 701 A 1 HETATM 27 O O28 QA7 . . . B 2 8.02 -21.387 -30.775 1 45.15 ? O28 QA7 701 A 1 HETATM 28 O O29 QA7 . . . B 2 9.871 -21.632 -29.185 1 61.81 ? O29 QA7 701 A 1 HETATM 29 O O30 QA7 . . . B 2 8.643 -24.945 -28.134 1 52.76 ? O30 QA7 701 A 1 HETATM 30 O O31 QA7 . . . B 2 5.388 -24.28 -27.601 1 52.55 ? O31 QA7 701 A 1 HETATM 31 P P08 QA7 . . . B 2 8.725 -22.357 -29.846 1 62.96 ? P08 QA7 701 A 1 HETATM 32 H H013 QA7 . . . B 2 4.406 -24.835 -25.444 1 48.71 ? H013 QA7 701 A 1 HETATM 33 H H011 QA7 . . . B 2 5.791 -25.21 -24.773 1 48.71 ? H011 QA7 701 A 1 HETATM 34 H H012 QA7 . . . B 2 4.472 -25.979 -24.35 1 48.71 ? H012 QA7 701 A 1 HETATM 35 H H021 QA7 . . . B 2 4.482 -26.563 -26.842 1 53.4 ? H021 QA7 701 A 1 HETATM 36 H H033 QA7 . . . B 2 5.828 -27.985 -24.797 1 56.01 ? H033 QA7 701 A 1 HETATM 37 H H031 QA7 . . . B 2 5.46 -28.638 -26.192 1 56.01 ? H031 QA7 701 A 1 HETATM 38 H H032 QA7 . . . B 2 4.31 -28.181 -25.204 1 56.01 ? H032 QA7 701 A 1 HETATM 39 H H042 QA7 . . . B 2 7.221 -26.352 -26.386 1 52.05 ? H042 QA7 701 A 1 HETATM 40 H H041 QA7 . . . B 2 6.543 -26.932 -27.689 1 52.05 ? H041 QA7 701 A 1 HETATM 41 H H102 QA7 . . . B 2 7.819 -24.784 -30.945 1 57.06 ? H102 QA7 701 A 1 HETATM 42 H H101 QA7 . . . B 2 8.01 -23.854 -32.216 1 57.06 ? H101 QA7 701 A 1 HETATM 43 H H111 QA7 . . . B 2 9.927 -24.934 -32.653 1 51.87 ? H111 QA7 701 A 1 HETATM 44 H H121 QA7 . . . B 2 7.459 -26.509 -32.694 1 45.67 ? H121 QA7 701 A 1 HETATM 45 H H131 QA7 . . . B 2 8.32 -28.053 -33.395 1 48.92 ? H131 QA7 701 A 1 HETATM 46 H H141 QA7 . . . B 2 10.664 -27.813 -31.91 1 46.9 ? H141 QA7 701 A 1 HETATM 47 H H161 QA7 . . . B 2 7.886 -27.363 -29.702 1 45.45 ? H161 QA7 701 A 1 HETATM 48 H H211 QA7 . . . B 2 10.531 -32.5 -32.089 1 46.86 ? H211 QA7 701 A 1 HETATM 49 H H242 QA7 . . . B 2 7.587 -33.275 -28.785 1 40.85 ? H242 QA7 701 A 1 HETATM 50 H H241 QA7 . . . B 2 7.095 -31.934 -28.363 1 40.85 ? H241 QA7 701 A 1 HETATM 51 H H261 QA7 . . . B 2 10.311 -28.097 -34.371 1 48.14 ? H261 QA7 701 A 1 HETATM 52 H H271 QA7 . . . B 2 7.392 -25.973 -34.793 1 51.38 ? H271 QA7 701 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #