data_6UM2
#
_model_server_result.job_id            MhHa9ifcMLddYXnqlgpbgQ 
_model_server_result.datetime_utc      '2024-11-01 04:40:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6um2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2501}' 
#
_entry.id    6UM2 
#
_exptl.entry_id    6UM2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UM2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UM2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 484 A CYS 484 1_555 A SG CYS 528 A CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 540 A CYS 540 1_555 A SG CYS 547 A CYS 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 581 A CYS 581 1_555 A SG CYS 614 A CYS 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 595 A CYS 595 1_555 A SG CYS 626 A CYS 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 A SG CYS 636 A CYS 636 1_555 A SG CYS 672 A CYS 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 A SG CYS 680 A CYS 680 1_555 A SG CYS 687 A CYS 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf7 A SG CYS 739 A CYS 739 1_555 A SG CYS 768 A CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 A SG CYS 775 A CYS 775 1_555 A SG CYS 822 A CYS 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf9 A SG CYS 831 A CYS 831 1_555 A SG CYS 838 A CYS 838 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf10 A SG CYS 883 A CYS 883 1_555 A SG CYS 918 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf11 A SG CYS 901 A CYS 901 1_555 A SG CYS 930 A CYS 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf12 A SG CYS 942 A CYS 942 1_555 A SG CYS 978 A CYS 978 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 A SG CYS 984 A CYS 984 1_555 A SG CYS 995 A CYS 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf14 A SG CYS 1051 A CYS 1051 1_555 A SG CYS 1086 A CYS 1086 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf15 A SG CYS 1093 A CYS 1093 1_555 A SG CYS 1134 A CYS 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 A SG CYS 1143 A CYS 1143 1_555 A SG CYS 1151 A CYS 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 A SG CYS 1186 A CYS 1186 1_555 A SG CYS 1214 A CYS 1214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf18 A SG CYS 1199 A CYS 1199 1_555 A SG CYS 1226 A CYS 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf19 A SG CYS 1236 A CYS 1236 1_555 A SG CYS 1271 A CYS 1271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf20 A SG CYS 1279 A CYS 1279 1_555 A SG CYS 1291 A CYS 1291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf21 A SG CYS 1328 A CYS 1328 1_555 A SG CYS 1358 A CYS 1358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf22 A SG CYS 1342 A CYS 1342 1_555 A SG CYS 1370 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf23 A SG CYS 1378 A CYS 1378 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf24 A SG CYS 1429 A CYS 1429 1_555 A SG CYS 1436 A CYS 1436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf25 A SG CYS 1470 A CYS 1470 1_555 A SG CYS 1503 A CYS 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf26 A SG CYS 1485 A CYS 1485 1_555 A SG CYS 1515 A CYS 1515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf27 A SG CYS 1525 A CYS 1525 1_555 A SG CYS 1562 A CYS 1562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf28 A SG CYS 1568 A CYS 1568 1_555 A SG CYS 1575 A CYS 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf29 A SG CYS 1607 A CYS 1607 1_555 A SG CYS 1643 A CYS 1643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf30 A SG CYS 1623 A CYS 1623 1_555 A SG CYS 1655 A CYS 1655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf31 A SG CYS 1661 A CYS 1661 1_555 A SG CYS 1704 A CYS 1704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf32 A SG CYS 1715 A CYS 1715 1_555 A SG CYS 1722 A CYS 1722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf33 A SG CYS 1759 A CYS 1759 1_555 A SG CYS 1792 A CYS 1792 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf34 A SG CYS 1775 A CYS 1775 1_555 A SG CYS 1804 A CYS 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf35 A SG CYS 1813 A CYS 1813 1_555 A SG CYS 1848 A CYS 1848 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf36 A SG CYS 1859 A CYS 1859 1_555 A SG CYS 1865 A CYS 1865 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf37 A SG CYS 1902 A CYS 1902 1_555 A SG CYS 1984 A CYS 1984 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf38 A SG CYS 1912 A CYS 1912 1_555 A SG CYS 1936 A CYS 1936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf39 A SG CYS 1926 A CYS 1926 1_555 A SG CYS 1951 A CYS 1951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf40 A SG CYS 1966 A CYS 1966 1_555 A SG CYS 1996 A CYS 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf41 A SG CYS 2003 A CYS 2003 1_555 A SG CYS 2038 A CYS 2038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf42 A SG CYS 2048 A CYS 2048 1_555 A SG CYS 2055 A CYS 2055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf43 A SG CYS 2091 A CYS 2091 1_555 A SG CYS 2122 A CYS 2122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf44 A SG CYS 2105 A CYS 2105 1_555 A SG CYS 2134 A CYS 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf45 B SG CYS 10 B CYS 9 1_555 B SG CYS 48 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf46 B SG CYS 22 B CYS 21 1_555 B SG CYS 61 B CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf47 B SG CYS 47 B CYS 46 1_555 B SG CYS 52 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 1030 A ASN 1030 1_555 G C1 NAG . A NAG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 A ND2 ASN 1665 A ASN 1665 1_555 H C1 NAG . A NAG 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6UM2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 2501 2862 NAG NAG . 
D 3 NAG A 1 2502 2863 NAG NAG . 
E 3 NAG A 1 2503 2864 NAG NAG . 
F 3 NAG A 1 2504 2865 NAG NAG . 
G 3 NAG A 1 2505 2866 NAG NAG . 
H 3 NAG A 1 2506 2867 NAG NAG . 
I 3 NAG A 1 2507 2868 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 172.75 149.125 190.892 1 50.97 ? C1 NAG 2501 A 1 
HETATM 2 C C2 NAG . . . C 3 172.254 147.711 190.599 1 51 ? C2 NAG 2501 A 1 
HETATM 3 C C3 NAG . . . C 3 173.084 146.69 191.372 1 51.32 ? C3 NAG 2501 A 1 
HETATM 4 C C4 NAG . . . C 3 174.571 146.893 191.095 1 51.29 ? C4 NAG 2501 A 1 
HETATM 5 C C5 NAG . . . C 3 174.971 148.347 191.348 1 51.1 ? C5 NAG 2501 A 1 
HETATM 6 C C6 NAG . . . C 3 176.438 148.602 191.001 1 51.01 ? C6 NAG 2501 A 1 
HETATM 7 C C7 NAG . . . C 3 169.854 147.77 190.056 1 50.29 ? C7 NAG 2501 A 1 
HETATM 8 C C8 NAG . . . C 3 168.465 147.578 190.593 1 50.12 ? C8 NAG 2501 A 1 
HETATM 9 N N2 NAG . . . C 3 170.844 147.581 190.936 1 50.64 ? N2 NAG 2501 A 1 
HETATM 10 O O3 NAG . . . C 3 172.699 145.365 190.992 1 51.74 ? O3 NAG 2501 A 1 
HETATM 11 O O4 NAG . . . C 3 175.339 146.017 191.929 1 51.55 ? O4 NAG 2501 A 1 
HETATM 12 O O5 NAG . . . C 3 174.142 149.219 190.57 1 50.99 ? O5 NAG 2501 A 1 
HETATM 13 O O6 NAG . . . C 3 177.149 149.031 192.167 1 51.33 ? O6 NAG 2501 A 1 
HETATM 14 O O7 NAG . . . C 3 170.036 148.076 188.887 1 50.22 ? O7 NAG 2501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#