data_6UM2 # _model_server_result.job_id AlHgpygxiO9xjBbC8c1YNA _model_server_result.datetime_utc '2024-11-01 04:31:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6um2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2507}' # _entry.id 6UM2 # _exptl.entry_id 6UM2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UM2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 484 A CYS 484 1_555 A SG CYS 528 A CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 540 A CYS 540 1_555 A SG CYS 547 A CYS 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 581 A CYS 581 1_555 A SG CYS 614 A CYS 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 595 A CYS 595 1_555 A SG CYS 626 A CYS 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 636 A CYS 636 1_555 A SG CYS 672 A CYS 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 680 A CYS 680 1_555 A SG CYS 687 A CYS 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 739 A CYS 739 1_555 A SG CYS 768 A CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 775 A CYS 775 1_555 A SG CYS 822 A CYS 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf9 A SG CYS 831 A CYS 831 1_555 A SG CYS 838 A CYS 838 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf10 A SG CYS 883 A CYS 883 1_555 A SG CYS 918 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf11 A SG CYS 901 A CYS 901 1_555 A SG CYS 930 A CYS 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf12 A SG CYS 942 A CYS 942 1_555 A SG CYS 978 A CYS 978 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 A SG CYS 984 A CYS 984 1_555 A SG CYS 995 A CYS 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 A SG CYS 1051 A CYS 1051 1_555 A SG CYS 1086 A CYS 1086 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf15 A SG CYS 1093 A CYS 1093 1_555 A SG CYS 1134 A CYS 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 A SG CYS 1143 A CYS 1143 1_555 A SG CYS 1151 A CYS 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 A SG CYS 1186 A CYS 1186 1_555 A SG CYS 1214 A CYS 1214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf18 A SG CYS 1199 A CYS 1199 1_555 A SG CYS 1226 A CYS 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf19 A SG CYS 1236 A CYS 1236 1_555 A SG CYS 1271 A CYS 1271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf20 A SG CYS 1279 A CYS 1279 1_555 A SG CYS 1291 A CYS 1291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 A SG CYS 1328 A CYS 1328 1_555 A SG CYS 1358 A CYS 1358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf22 A SG CYS 1342 A CYS 1342 1_555 A SG CYS 1370 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf23 A SG CYS 1378 A CYS 1378 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf24 A SG CYS 1429 A CYS 1429 1_555 A SG CYS 1436 A CYS 1436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf25 A SG CYS 1470 A CYS 1470 1_555 A SG CYS 1503 A CYS 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf26 A SG CYS 1485 A CYS 1485 1_555 A SG CYS 1515 A CYS 1515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf27 A SG CYS 1525 A CYS 1525 1_555 A SG CYS 1562 A CYS 1562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf28 A SG CYS 1568 A CYS 1568 1_555 A SG CYS 1575 A CYS 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf29 A SG CYS 1607 A CYS 1607 1_555 A SG CYS 1643 A CYS 1643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf30 A SG CYS 1623 A CYS 1623 1_555 A SG CYS 1655 A CYS 1655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf31 A SG CYS 1661 A CYS 1661 1_555 A SG CYS 1704 A CYS 1704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf32 A SG CYS 1715 A CYS 1715 1_555 A SG CYS 1722 A CYS 1722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf33 A SG CYS 1759 A CYS 1759 1_555 A SG CYS 1792 A CYS 1792 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf34 A SG CYS 1775 A CYS 1775 1_555 A SG CYS 1804 A CYS 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf35 A SG CYS 1813 A CYS 1813 1_555 A SG CYS 1848 A CYS 1848 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf36 A SG CYS 1859 A CYS 1859 1_555 A SG CYS 1865 A CYS 1865 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf37 A SG CYS 1902 A CYS 1902 1_555 A SG CYS 1984 A CYS 1984 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf38 A SG CYS 1912 A CYS 1912 1_555 A SG CYS 1936 A CYS 1936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf39 A SG CYS 1926 A CYS 1926 1_555 A SG CYS 1951 A CYS 1951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf40 A SG CYS 1966 A CYS 1966 1_555 A SG CYS 1996 A CYS 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf41 A SG CYS 2003 A CYS 2003 1_555 A SG CYS 2038 A CYS 2038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf42 A SG CYS 2048 A CYS 2048 1_555 A SG CYS 2055 A CYS 2055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf43 A SG CYS 2091 A CYS 2091 1_555 A SG CYS 2122 A CYS 2122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf44 A SG CYS 2105 A CYS 2105 1_555 A SG CYS 2134 A CYS 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf45 B SG CYS 10 B CYS 9 1_555 B SG CYS 48 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf46 B SG CYS 22 B CYS 21 1_555 B SG CYS 61 B CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf47 B SG CYS 47 B CYS 46 1_555 B SG CYS 52 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 1030 A ASN 1030 1_555 G C1 NAG . A NAG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 1665 A ASN 1665 1_555 H C1 NAG . A NAG 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6UM2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 2501 2862 NAG NAG . D 3 NAG A 1 2502 2863 NAG NAG . E 3 NAG A 1 2503 2864 NAG NAG . F 3 NAG A 1 2504 2865 NAG NAG . G 3 NAG A 1 2505 2866 NAG NAG . H 3 NAG A 1 2506 2867 NAG NAG . I 3 NAG A 1 2507 2868 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 3 111.299 131.99 123.471 1 0.5 ? C1 NAG 2507 A 1 HETATM 2 C C2 NAG . . . I 3 112.421 132.104 122.447 1 0.5 ? C2 NAG 2507 A 1 HETATM 3 C C3 NAG . . . I 3 111.869 132.159 121.026 1 0.5 ? C3 NAG 2507 A 1 HETATM 4 C C4 NAG . . . I 3 110.886 131.018 120.78 1 0.5 ? C4 NAG 2507 A 1 HETATM 5 C C5 NAG . . . I 3 109.841 130.953 121.895 1 0.5 ? C5 NAG 2507 A 1 HETATM 6 C C6 NAG . . . I 3 108.888 129.773 121.723 1 0.5 ? C6 NAG 2507 A 1 HETATM 7 C C7 NAG . . . I 3 114.519 133.294 122.91 1 0.5 ? C7 NAG 2507 A 1 HETATM 8 C C8 NAG . . . I 3 115.118 134.639 123.193 1 0.5 ? C8 NAG 2507 A 1 HETATM 9 N N2 NAG . . . I 3 113.197 133.298 122.726 1 0.5 ? N2 NAG 2507 A 1 HETATM 10 O O3 NAG . . . I 3 112.946 132.082 120.083 1 0.5 ? O3 NAG 2507 A 1 HETATM 11 O O4 NAG . . . I 3 110.24 131.218 119.517 1 0.5 ? O4 NAG 2507 A 1 HETATM 12 O O5 NAG . . . I 3 110.491 130.852 123.167 1 0.5 ? O5 NAG 2507 A 1 HETATM 13 O O6 NAG . . . I 3 107.618 130.244 121.257 1 0.5 ? O6 NAG 2507 A 1 HETATM 14 O O7 NAG . . . I 3 115.21 132.286 122.853 1 0.5 ? O7 NAG 2507 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #