data_6UMA # _model_server_result.job_id n49E9eVNG_k1_kuOUrtr7Q _model_server_result.datetime_utc '2024-11-13 12:15:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 6UMA # _exptl.entry_id 6UMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UMA _cell.length_a 41.94 _cell.length_b 62.07 _cell.length_c 128.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 43 A PRO 377 1_555 A N CME 44 A CME 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CME 44 A CME 378 1_555 A N ARG 45 A ARG 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A C SER 55 A SER 389 1_555 A N CME 56 A CME 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 A C CME 56 A CME 390 1_555 A N GLY 57 A GLY 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C VAL 166 A VAL 500 1_555 A N CME 167 A CME 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C CME 167 A CME 501 1_555 A N SER 168 A SER 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 B C PRO 43 B PRO 377 1_555 B N CME 44 B CME 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale8 B C CME 44 B CME 378 1_555 B N ARG 45 B ARG 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale9 B C SER 55 B SER 389 1_555 B N CME 56 B CME 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 B C CME 56 B CME 390 1_555 B N GLY 57 B GLY 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 B C VAL 166 B VAL 500 1_555 B N CME 167 B CME 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale12 B C CME 167 B CME 501 1_555 B N SER 168 B SER 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 150 n n C1 C2 GOL sing 151 n n C1 H11 GOL sing 152 n n C1 H12 GOL sing 153 n n O1 HO1 GOL sing 154 n n C2 O2 GOL sing 155 n n C2 C3 GOL sing 156 n n C2 H2 GOL sing 157 n n O2 HO2 GOL sing 158 n n C3 O3 GOL sing 159 n n C3 H31 GOL sing 160 n n C3 H32 GOL sing 161 n n O3 HO3 GOL sing 162 n n # _atom_sites.entry_id 6UMA _atom_sites.fract_transf_matrix[1][1] 0.023844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLI A 1 601 1 MLI MLI . D 2 MLI A 1 602 3 MLI MLI . E 3 GOL A 1 603 1 GOL GOL . F 3 GOL A 1 604 2 GOL GOL . G 2 MLI B 1 601 2 MLI MLI . H 2 MLI B 1 602 4 MLI MLI . I 4 HOH A 1 701 154 HOH HOH . I 4 HOH A 2 702 126 HOH HOH . I 4 HOH A 3 703 165 HOH HOH . I 4 HOH A 4 704 171 HOH HOH . I 4 HOH A 5 705 87 HOH HOH . I 4 HOH A 6 706 35 HOH HOH . I 4 HOH A 7 707 55 HOH HOH . I 4 HOH A 8 708 191 HOH HOH . I 4 HOH A 9 709 8 HOH HOH . I 4 HOH A 10 710 136 HOH HOH . I 4 HOH A 11 711 49 HOH HOH . I 4 HOH A 12 712 61 HOH HOH . I 4 HOH A 13 713 32 HOH HOH . I 4 HOH A 14 714 57 HOH HOH . I 4 HOH A 15 715 184 HOH HOH . I 4 HOH A 16 716 150 HOH HOH . I 4 HOH A 17 717 197 HOH HOH . I 4 HOH A 18 718 30 HOH HOH . I 4 HOH A 19 719 47 HOH HOH . I 4 HOH A 20 720 166 HOH HOH . I 4 HOH A 21 721 46 HOH HOH . I 4 HOH A 22 722 52 HOH HOH . I 4 HOH A 23 723 175 HOH HOH . I 4 HOH A 24 724 178 HOH HOH . I 4 HOH A 25 725 15 HOH HOH . I 4 HOH A 26 726 146 HOH HOH . I 4 HOH A 27 727 139 HOH HOH . I 4 HOH A 28 728 105 HOH HOH . I 4 HOH A 29 729 91 HOH HOH . I 4 HOH A 30 730 173 HOH HOH . I 4 HOH A 31 731 138 HOH HOH . I 4 HOH A 32 732 123 HOH HOH . I 4 HOH A 33 733 41 HOH HOH . I 4 HOH A 34 734 12 HOH HOH . I 4 HOH A 35 735 194 HOH HOH . I 4 HOH A 36 736 111 HOH HOH . I 4 HOH A 37 737 4 HOH HOH . I 4 HOH A 38 738 180 HOH HOH . I 4 HOH A 39 739 25 HOH HOH . I 4 HOH A 40 740 97 HOH HOH . I 4 HOH A 41 741 107 HOH HOH . I 4 HOH A 42 742 141 HOH HOH . I 4 HOH A 43 743 85 HOH HOH . I 4 HOH A 44 744 44 HOH HOH . I 4 HOH A 45 745 65 HOH HOH . I 4 HOH A 46 746 5 HOH HOH . I 4 HOH A 47 747 143 HOH HOH . I 4 HOH A 48 748 153 HOH HOH . I 4 HOH A 49 749 39 HOH HOH . I 4 HOH A 50 750 172 HOH HOH . I 4 HOH A 51 751 45 HOH HOH . I 4 HOH A 52 752 179 HOH HOH . I 4 HOH A 53 753 195 HOH HOH . I 4 HOH A 54 754 102 HOH HOH . I 4 HOH A 55 755 37 HOH HOH . I 4 HOH A 56 756 94 HOH HOH . I 4 HOH A 57 757 114 HOH HOH . I 4 HOH A 58 758 74 HOH HOH . I 4 HOH A 59 759 124 HOH HOH . I 4 HOH A 60 760 82 HOH HOH . I 4 HOH A 61 761 53 HOH HOH . I 4 HOH A 62 762 152 HOH HOH . I 4 HOH A 63 763 38 HOH HOH . I 4 HOH A 64 764 89 HOH HOH . I 4 HOH A 65 765 54 HOH HOH . I 4 HOH A 66 766 110 HOH HOH . I 4 HOH A 67 767 42 HOH HOH . I 4 HOH A 68 768 73 HOH HOH . I 4 HOH A 69 769 170 HOH HOH . I 4 HOH A 70 770 92 HOH HOH . I 4 HOH A 71 771 144 HOH HOH . I 4 HOH A 72 772 159 HOH HOH . I 4 HOH A 73 773 31 HOH HOH . I 4 HOH A 74 774 79 HOH HOH . I 4 HOH A 75 775 51 HOH HOH . I 4 HOH A 76 776 176 HOH HOH . I 4 HOH A 77 777 137 HOH HOH . I 4 HOH A 78 778 100 HOH HOH . I 4 HOH A 79 779 164 HOH HOH . I 4 HOH A 80 780 130 HOH HOH . I 4 HOH A 81 781 162 HOH HOH . I 4 HOH A 82 782 183 HOH HOH . I 4 HOH A 83 783 196 HOH HOH . I 4 HOH A 84 784 121 HOH HOH . I 4 HOH A 85 785 174 HOH HOH . I 4 HOH A 86 786 120 HOH HOH . I 4 HOH A 87 787 112 HOH HOH . I 4 HOH A 88 788 190 HOH HOH . J 4 HOH B 1 701 78 HOH HOH . J 4 HOH B 2 702 129 HOH HOH . J 4 HOH B 3 703 108 HOH HOH . J 4 HOH B 4 704 83 HOH HOH . J 4 HOH B 5 705 72 HOH HOH . J 4 HOH B 6 706 90 HOH HOH . J 4 HOH B 7 707 160 HOH HOH . J 4 HOH B 8 708 117 HOH HOH . J 4 HOH B 9 709 80 HOH HOH . J 4 HOH B 10 710 63 HOH HOH . J 4 HOH B 11 711 69 HOH HOH . J 4 HOH B 12 712 96 HOH HOH . J 4 HOH B 13 713 134 HOH HOH . J 4 HOH B 14 714 43 HOH HOH . J 4 HOH B 15 715 133 HOH HOH . J 4 HOH B 16 716 13 HOH HOH . J 4 HOH B 17 717 142 HOH HOH . J 4 HOH B 18 718 168 HOH HOH . J 4 HOH B 19 719 202 HOH HOH . J 4 HOH B 20 720 182 HOH HOH . J 4 HOH B 21 721 18 HOH HOH . J 4 HOH B 22 722 16 HOH HOH . J 4 HOH B 23 723 14 HOH HOH . J 4 HOH B 24 724 88 HOH HOH . J 4 HOH B 25 725 17 HOH HOH . J 4 HOH B 26 726 56 HOH HOH . J 4 HOH B 27 727 151 HOH HOH . J 4 HOH B 28 728 95 HOH HOH . J 4 HOH B 29 729 33 HOH HOH . J 4 HOH B 30 730 109 HOH HOH . J 4 HOH B 31 731 140 HOH HOH . J 4 HOH B 32 732 21 HOH HOH . J 4 HOH B 33 733 19 HOH HOH . J 4 HOH B 34 734 132 HOH HOH . J 4 HOH B 35 735 24 HOH HOH . J 4 HOH B 36 736 68 HOH HOH . J 4 HOH B 37 737 103 HOH HOH . J 4 HOH B 38 738 36 HOH HOH . J 4 HOH B 39 739 186 HOH HOH . J 4 HOH B 40 740 75 HOH HOH . J 4 HOH B 41 741 189 HOH HOH . J 4 HOH B 42 742 22 HOH HOH . J 4 HOH B 43 743 135 HOH HOH . J 4 HOH B 44 744 77 HOH HOH . J 4 HOH B 45 745 187 HOH HOH . J 4 HOH B 46 746 161 HOH HOH . J 4 HOH B 47 747 201 HOH HOH . J 4 HOH B 48 748 157 HOH HOH . J 4 HOH B 49 749 23 HOH HOH . J 4 HOH B 50 750 9 HOH HOH . J 4 HOH B 51 751 6 HOH HOH . J 4 HOH B 52 752 58 HOH HOH . J 4 HOH B 53 753 10 HOH HOH . J 4 HOH B 54 754 181 HOH HOH . J 4 HOH B 55 755 50 HOH HOH . J 4 HOH B 56 756 71 HOH HOH . J 4 HOH B 57 757 64 HOH HOH . J 4 HOH B 58 758 81 HOH HOH . J 4 HOH B 59 759 155 HOH HOH . J 4 HOH B 60 760 3 HOH HOH . J 4 HOH B 61 761 28 HOH HOH . J 4 HOH B 62 762 7 HOH HOH . J 4 HOH B 63 763 40 HOH HOH . J 4 HOH B 64 764 62 HOH HOH . J 4 HOH B 65 765 125 HOH HOH . J 4 HOH B 66 766 20 HOH HOH . J 4 HOH B 67 767 59 HOH HOH . J 4 HOH B 68 768 128 HOH HOH . J 4 HOH B 69 769 1 HOH HOH . J 4 HOH B 70 770 199 HOH HOH . J 4 HOH B 71 771 2 HOH HOH . J 4 HOH B 72 772 104 HOH HOH . J 4 HOH B 73 773 149 HOH HOH . J 4 HOH B 74 774 76 HOH HOH . J 4 HOH B 75 775 148 HOH HOH . J 4 HOH B 76 776 113 HOH HOH . J 4 HOH B 77 777 67 HOH HOH . J 4 HOH B 78 778 156 HOH HOH . J 4 HOH B 79 779 106 HOH HOH . J 4 HOH B 80 780 185 HOH HOH . J 4 HOH B 81 781 200 HOH HOH . J 4 HOH B 82 782 34 HOH HOH . J 4 HOH B 83 783 48 HOH HOH . J 4 HOH B 84 784 11 HOH HOH . J 4 HOH B 85 785 177 HOH HOH . J 4 HOH B 86 786 116 HOH HOH . J 4 HOH B 87 787 84 HOH HOH . J 4 HOH B 88 788 27 HOH HOH . J 4 HOH B 89 789 66 HOH HOH . J 4 HOH B 90 790 29 HOH HOH . J 4 HOH B 91 791 169 HOH HOH . J 4 HOH B 92 792 127 HOH HOH . J 4 HOH B 93 793 99 HOH HOH . J 4 HOH B 94 794 163 HOH HOH . J 4 HOH B 95 795 70 HOH HOH . J 4 HOH B 96 796 26 HOH HOH . J 4 HOH B 97 797 60 HOH HOH . J 4 HOH B 98 798 147 HOH HOH . J 4 HOH B 99 799 118 HOH HOH . J 4 HOH B 100 800 188 HOH HOH . J 4 HOH B 101 801 198 HOH HOH . J 4 HOH B 102 802 93 HOH HOH . J 4 HOH B 103 803 145 HOH HOH . J 4 HOH B 104 804 158 HOH HOH . J 4 HOH B 105 805 122 HOH HOH . J 4 HOH B 106 806 167 HOH HOH . J 4 HOH B 107 807 192 HOH HOH . J 4 HOH B 108 808 119 HOH HOH . J 4 HOH B 109 809 193 HOH HOH . J 4 HOH B 110 810 98 HOH HOH . J 4 HOH B 111 811 131 HOH HOH . J 4 HOH B 112 812 101 HOH HOH . J 4 HOH B 113 813 115 HOH HOH . J 4 HOH B 114 814 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 3.987 75.892 -37.224 1 33.61 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . F 3 3.652 75.112 -38.378 1 34.47 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . F 3 2.797 76.221 -36.328 1 30.63 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . F 3 1.978 75.072 -36.087 1 30.24 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . F 3 3.25 76.736 -34.973 1 30.23 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . F 3 2.183 77.199 -34.153 1 31.24 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #