data_6UMD # _model_server_result.job_id sVLhMDjBxeQ19Ld5_mQzaQ _model_server_result.datetime_utc '2024-11-22 19:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6umd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6UMD # _exptl.entry_id 6UMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.632 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(pyridin-3-yl)-N-(5-{4-[(5-{[(pyridin-3-yl)acetyl]amino}-1,3,4-thiadiazol-2-yl)amino]piperidin-1-yl}-1,3,4-thiadiazol-2-yl)acetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UMD _cell.length_a 100.477 _cell.length_b 139.161 _cell.length_c 178.186 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,E,F,H,J 1 1 C,I 1 2 A,G 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x+1/2,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 50.2385 0 -89.093 3 'crystal symmetry operation' 4_455 x-1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 -50.2385 69.5805 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C23 H24 N10 O2 S2' _chem_comp.formula_weight 536.632 _chem_comp.id QAJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-(pyridin-3-yl)-N-(5-{4-[(5-{[(pyridin-3-yl)acetyl]amino}-1,3,4-thiadiazol-2-yl)amino]piperidin-1-yl}-1,3,4-thiadiazol-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N8 C16 QAJ doub 277 n y N8 N7 QAJ sing 278 n y N9 C16 QAJ sing 279 n n N9 C17 QAJ sing 280 n n C18 C19 QAJ sing 281 n n C18 C17 QAJ sing 282 n n C23 N10 QAJ doub 283 n y C23 C19 QAJ sing 284 n y C16 S2 QAJ sing 285 n y N7 C15 QAJ doub 286 n y N10 C22 QAJ sing 287 n y C19 C20 QAJ doub 288 n y C17 O2 QAJ doub 289 n n C22 C21 QAJ doub 290 n y C20 C21 QAJ sing 291 n y C4 C3 QAJ sing 292 n n C4 C5 QAJ sing 293 n n C15 S2 QAJ sing 294 n y C15 N1 QAJ sing 295 n n N2 C5 QAJ sing 296 n n N2 C6 QAJ sing 297 n n C3 N1 QAJ sing 298 n n C5 C1 QAJ sing 299 n n C1 C2 QAJ sing 300 n n N1 C2 QAJ sing 301 n n S1 C6 QAJ sing 302 n y S1 C7 QAJ sing 303 n y C6 N3 QAJ doub 304 n y O1 C8 QAJ doub 305 n n N6 C14 QAJ doub 306 n y N6 C13 QAJ sing 307 n y C14 C10 QAJ sing 308 n y N3 N4 QAJ sing 309 n y C8 N5 QAJ sing 310 n n C8 C9 QAJ sing 311 n n C7 N5 QAJ sing 312 n n C7 N4 QAJ doub 313 n y C13 C12 QAJ doub 314 n y C10 C9 QAJ sing 315 n n C10 C11 QAJ doub 316 n y C12 C11 QAJ sing 317 n y C4 H1 QAJ sing 318 n n C4 H2 QAJ sing 319 n n C5 H3 QAJ sing 320 n n C13 H4 QAJ sing 321 n n C20 H5 QAJ sing 322 n n C21 H6 QAJ sing 323 n n C22 H7 QAJ sing 324 n n C1 H8 QAJ sing 325 n n C1 H9 QAJ sing 326 n n C11 H10 QAJ sing 327 n n C12 H11 QAJ sing 328 n n C14 H12 QAJ sing 329 n n C18 H13 QAJ sing 330 n n C18 H14 QAJ sing 331 n n C2 H15 QAJ sing 332 n n C2 H16 QAJ sing 333 n n C23 H17 QAJ sing 334 n n C3 H18 QAJ sing 335 n n C3 H19 QAJ sing 336 n n C9 H20 QAJ sing 337 n n C9 H21 QAJ sing 338 n n N2 H22 QAJ sing 339 n n N5 H23 QAJ sing 340 n n N9 H24 QAJ sing 341 n n # _atom_sites.entry_id 6UMD _atom_sites.fract_transf_matrix[1][1] 0.009953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 QAJ B 1 601 1 QAJ LIG . F 2 QAJ D 1 601 2 QAJ LIG . G 3 HOH A 1 601 30 HOH HOH . G 3 HOH A 2 602 13 HOH HOH . G 3 HOH A 3 603 15 HOH HOH . G 3 HOH A 4 604 32 HOH HOH . G 3 HOH A 5 605 14 HOH HOH . G 3 HOH A 6 606 31 HOH HOH . G 3 HOH A 7 607 7 HOH HOH . H 3 HOH B 1 701 6 HOH HOH . H 3 HOH B 2 702 10 HOH HOH . H 3 HOH B 3 703 27 HOH HOH . H 3 HOH B 4 704 35 HOH HOH . H 3 HOH B 5 705 1 HOH HOH . H 3 HOH B 6 706 28 HOH HOH . H 3 HOH B 7 707 2 HOH HOH . H 3 HOH B 8 708 17 HOH HOH . H 3 HOH B 9 709 41 HOH HOH . H 3 HOH B 10 710 38 HOH HOH . I 3 HOH C 1 601 9 HOH HOH . I 3 HOH C 2 602 36 HOH HOH . I 3 HOH C 3 603 19 HOH HOH . I 3 HOH C 4 604 23 HOH HOH . I 3 HOH C 5 605 12 HOH HOH . I 3 HOH C 6 606 5 HOH HOH . I 3 HOH C 7 607 42 HOH HOH . I 3 HOH C 8 608 29 HOH HOH . I 3 HOH C 9 609 11 HOH HOH . I 3 HOH C 10 610 16 HOH HOH . I 3 HOH C 11 611 8 HOH HOH . J 3 HOH D 1 701 22 HOH HOH . J 3 HOH D 2 702 24 HOH HOH . J 3 HOH D 3 703 25 HOH HOH . J 3 HOH D 4 704 33 HOH HOH . J 3 HOH D 5 705 3 HOH HOH . J 3 HOH D 6 706 4 HOH HOH . J 3 HOH D 7 707 34 HOH HOH . J 3 HOH D 8 708 18 HOH HOH . J 3 HOH D 9 709 20 HOH HOH . J 3 HOH D 10 710 21 HOH HOH . J 3 HOH D 11 711 39 HOH HOH . J 3 HOH D 12 712 26 HOH HOH . J 3 HOH D 13 713 40 HOH HOH . J 3 HOH D 14 714 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QAJ . . . E 2 19.277 23.519 -2.133 1 58.34 ? N1 QAJ 601 B 1 HETATM 2 N N3 QAJ . . . E 2 23.851 23.867 -0.468 1 59.28 ? N3 QAJ 601 B 1 HETATM 3 C C4 QAJ . . . E 2 21.183 22.476 -3.325 1 56.72 ? C4 QAJ 601 B 1 HETATM 4 C C5 QAJ . . . E 2 22.03 23.294 -2.418 1 59.16 ? C5 QAJ 601 B 1 HETATM 5 C C6 QAJ . . . E 2 23.953 24.179 -1.745 1 63.28 ? C6 QAJ 601 B 1 HETATM 6 C C7 QAJ . . . E 2 25.04 25.737 -0.281 1 57.81 ? C7 QAJ 601 B 1 HETATM 7 C C8 QAJ . . . E 2 26.89 27.258 -0.339 1 59.89 ? C8 QAJ 601 B 1 HETATM 8 C C10 QAJ . . . E 2 27.485 29.491 0.359 1 81.26 ? C10 QAJ 601 B 1 HETATM 9 C C13 QAJ . . . E 2 27.134 32.079 -0.225 1 89.9 ? C13 QAJ 601 B 1 HETATM 10 C C15 QAJ . . . E 2 18.604 24.168 -3.1 1 67.26 ? C15 QAJ 601 B 1 HETATM 11 C C17 QAJ . . . E 2 15.412 27.087 -4.035 1 67.56 ? C17 QAJ 601 B 1 HETATM 12 C C20 QAJ . . . E 2 13.04 29.373 -3.411 1 79.62 ? C20 QAJ 601 B 1 HETATM 13 C C21 QAJ . . . E 2 12.935 30.689 -3.022 1 84.92 ? C21 QAJ 601 B 1 HETATM 14 C C22 QAJ . . . E 2 13.839 31.613 -3.511 1 89.87 ? C22 QAJ 601 B 1 HETATM 15 C C1 QAJ . . . E 2 21.368 24.636 -2.4 1 62.46 ? C1 QAJ 601 B 1 HETATM 16 C C11 QAJ . . . E 2 26.685 30.257 1.186 1 85.29 ? C11 QAJ 601 B 1 HETATM 17 C C12 QAJ . . . E 2 26.498 31.587 0.889 1 85.09 ? C12 QAJ 601 B 1 HETATM 18 C C14 QAJ . . . E 2 28.078 30.091 -0.731 1 82.39 ? C14 QAJ 601 B 1 HETATM 19 C C16 QAJ . . . E 2 17.114 25.474 -4.403 1 72.53 ? C16 QAJ 601 B 1 HETATM 20 C C18 QAJ . . . E 2 14.211 27.649 -4.695 1 71 ? C18 QAJ 601 B 1 HETATM 21 C C19 QAJ . . . E 2 14.065 29.059 -4.264 1 72 ? C19 QAJ 601 B 1 HETATM 22 C C2 QAJ . . . E 2 20.187 24.422 -1.492 1 61.88 ? C2 QAJ 601 B 1 HETATM 23 C C23 QAJ . . . E 2 14.919 30.054 -4.694 1 78.01 ? C23 QAJ 601 B 1 HETATM 24 C C3 QAJ . . . E 2 19.913 22.271 -2.51 1 62.19 ? C3 QAJ 601 B 1 HETATM 25 C C9 QAJ . . . E 2 27.71 28.041 0.625 1 67.71 ? C9 QAJ 601 B 1 HETATM 26 N N10 QAJ . . . E 2 14.846 31.344 -4.347 1 84.49 ? N10 QAJ 601 B 1 HETATM 27 N N2 QAJ . . . E 2 23.415 23.473 -2.769 1 62.37 ? N2 QAJ 601 B 1 HETATM 28 N N4 QAJ . . . E 2 24.469 24.754 0.379 1 52.64 ? N4 QAJ 601 B 1 HETATM 29 N N5 QAJ . . . E 2 25.733 26.812 0.244 1 59.2 ? N5 QAJ 601 B 1 HETATM 30 N N6 QAJ . . . E 2 27.917 31.374 -1.05 1 87.19 ? N6 QAJ 601 B 1 HETATM 31 N N7 QAJ . . . E 2 18.917 24.195 -4.376 1 71.42 ? N7 QAJ 601 B 1 HETATM 32 N N8 QAJ . . . E 2 18.059 24.945 -5.138 1 67.35 ? N8 QAJ 601 B 1 HETATM 33 N N9 QAJ . . . E 2 16.1 26.267 -4.882 1 77.02 ? N9 QAJ 601 B 1 HETATM 34 O O1 QAJ . . . E 2 27.034 27.445 -1.536 1 67.31 ? O1 QAJ 601 B 1 HETATM 35 O O2 QAJ . . . E 2 15.79 27.516 -2.962 1 60.86 ? O2 QAJ 601 B 1 HETATM 36 S S1 QAJ . . . E 2 24.832 25.626 -1.977 1 54.52 ? S1 QAJ 601 B 1 HETATM 37 S S2 QAJ . . . E 2 17.211 25.083 -2.734 1 65.72 ? S2 QAJ 601 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 37 #