data_6UME # _model_server_result.job_id z5nfxZUQRhTG0Ujdcvz6RQ _model_server_result.datetime_utc '2024-12-26 23:07:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ume # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6UME # _exptl.entry_id 6UME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.632 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(pyridin-3-yl)-N-(5-{4-[(5-{[(pyridin-3-yl)acetyl]amino}-1,3,4-thiadiazol-2-yl)amino]piperidin-1-yl}-1,3,4-thiadiazol-2-yl)acetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UME _cell.length_a 100.872 _cell.length_b 139.088 _cell.length_c 178.237 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UME _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C23 H24 N10 O2 S2' _chem_comp.formula_weight 536.632 _chem_comp.id QAJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-(pyridin-3-yl)-N-(5-{4-[(5-{[(pyridin-3-yl)acetyl]amino}-1,3,4-thiadiazol-2-yl)amino]piperidin-1-yl}-1,3,4-thiadiazol-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N8 C16 QAJ doub 275 n y N8 N7 QAJ sing 276 n y N9 C16 QAJ sing 277 n n N9 C17 QAJ sing 278 n n C18 C19 QAJ sing 279 n n C18 C17 QAJ sing 280 n n C23 N10 QAJ doub 281 n y C23 C19 QAJ sing 282 n y C16 S2 QAJ sing 283 n y N7 C15 QAJ doub 284 n y N10 C22 QAJ sing 285 n y C19 C20 QAJ doub 286 n y C17 O2 QAJ doub 287 n n C22 C21 QAJ doub 288 n y C20 C21 QAJ sing 289 n y C4 C3 QAJ sing 290 n n C4 C5 QAJ sing 291 n n C15 S2 QAJ sing 292 n y C15 N1 QAJ sing 293 n n N2 C5 QAJ sing 294 n n N2 C6 QAJ sing 295 n n C3 N1 QAJ sing 296 n n C5 C1 QAJ sing 297 n n C1 C2 QAJ sing 298 n n N1 C2 QAJ sing 299 n n S1 C6 QAJ sing 300 n y S1 C7 QAJ sing 301 n y C6 N3 QAJ doub 302 n y O1 C8 QAJ doub 303 n n N6 C14 QAJ doub 304 n y N6 C13 QAJ sing 305 n y C14 C10 QAJ sing 306 n y N3 N4 QAJ sing 307 n y C8 N5 QAJ sing 308 n n C8 C9 QAJ sing 309 n n C7 N5 QAJ sing 310 n n C7 N4 QAJ doub 311 n y C13 C12 QAJ doub 312 n y C10 C9 QAJ sing 313 n n C10 C11 QAJ doub 314 n y C12 C11 QAJ sing 315 n y C4 H1 QAJ sing 316 n n C4 H2 QAJ sing 317 n n C5 H3 QAJ sing 318 n n C13 H4 QAJ sing 319 n n C20 H5 QAJ sing 320 n n C21 H6 QAJ sing 321 n n C22 H7 QAJ sing 322 n n C1 H8 QAJ sing 323 n n C1 H9 QAJ sing 324 n n C11 H10 QAJ sing 325 n n C12 H11 QAJ sing 326 n n C14 H12 QAJ sing 327 n n C18 H13 QAJ sing 328 n n C18 H14 QAJ sing 329 n n C2 H15 QAJ sing 330 n n C2 H16 QAJ sing 331 n n C23 H17 QAJ sing 332 n n C3 H18 QAJ sing 333 n n C3 H19 QAJ sing 334 n n C9 H20 QAJ sing 335 n n C9 H21 QAJ sing 336 n n N2 H22 QAJ sing 337 n n N5 H23 QAJ sing 338 n n N9 H24 QAJ sing 339 n n # _atom_sites.entry_id 6UME _atom_sites.fract_transf_matrix[1][1] 0.009914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 QAJ A 1 601 1 QAJ U61 . F 2 QAJ B 1 601 2 QAJ U61 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QAJ . . . F 2 -31.385 46.211 2.582 1 73.3 ? N1 QAJ 601 B 1 HETATM 2 N N3 QAJ . . . F 2 -26.379 45.583 0.582 1 57.63 ? N3 QAJ 601 B 1 HETATM 3 C C4 QAJ . . . F 2 -29.19 45.253 2.244 1 65.41 ? C4 QAJ 601 B 1 HETATM 4 C C5 QAJ . . . F 2 -28.349 46.455 2.614 1 56.81 ? C5 QAJ 601 B 1 HETATM 5 C C6 QAJ . . . F 2 -26.348 45.369 1.912 1 59.31 ? C6 QAJ 601 B 1 HETATM 6 C C7 QAJ . . . F 2 -25.023 43.773 0.432 1 64.85 ? C7 QAJ 601 B 1 HETATM 7 C C8 QAJ . . . F 2 -23.015 42.198 0.389 1 79.54 ? C8 QAJ 601 B 1 HETATM 8 C C10 QAJ . . . F 2 -21.8 39.794 0.403 1 136.08 ? C10 QAJ 601 B 1 HETATM 9 C C13 QAJ . . . F 2 -21.65 37.476 1.791 1 176.02 ? C13 QAJ 601 B 1 HETATM 10 C C15 QAJ . . . F 2 -32.057 45.337 3.388 1 67.34 ? C15 QAJ 601 B 1 HETATM 11 C C17 QAJ . . . F 2 -35.526 41.964 4.48 1 73.6 ? C17 QAJ 601 B 1 HETATM 12 C C20 QAJ . . . F 2 -37.179 39.474 3.188 1 136.89 ? C20 QAJ 601 B 1 HETATM 13 C C21 QAJ . . . F 2 -36.664 38.421 2.315 1 149.51 ? C21 QAJ 601 B 1 HETATM 14 C C22 QAJ . . . F 2 -35.237 37.826 2.373 1 159.29 ? C22 QAJ 601 B 1 HETATM 15 C C1 QAJ . . . F 2 -29.166 46.931 3.765 1 66.5 ? C1 QAJ 601 B 1 HETATM 16 C C11 QAJ . . . F 2 -21.315 38.629 -0.229 1 136.28 ? C11 QAJ 601 B 1 HETATM 17 C C12 QAJ . . . F 2 -21.234 37.459 0.484 1 150.53 ? C12 QAJ 601 B 1 HETATM 18 C C14 QAJ . . . F 2 -22.158 39.638 1.691 1 182.83 ? C14 QAJ 601 B 1 HETATM 19 C C16 QAJ . . . F 2 -33.565 43.669 4.699 1 78.05 ? C16 QAJ 601 B 1 HETATM 20 C C18 QAJ . . . F 2 -36.581 40.929 4.98 1 94.3 ? C18 QAJ 601 B 1 HETATM 21 C C19 QAJ . . . F 2 -36.333 39.94 4.128 1 125.94 ? C19 QAJ 601 B 1 HETATM 22 C C2 QAJ . . . F 2 -30.615 47.324 3.272 1 78.17 ? C2 QAJ 601 B 1 HETATM 23 C C23 QAJ . . . F 2 -35.016 39.468 4.163 1 156.13 ? C23 QAJ 601 B 1 HETATM 24 C C3 QAJ . . . F 2 -30.478 45.687 1.608 1 75.91 ? C3 QAJ 601 B 1 HETATM 25 C C9 QAJ . . . F 2 -21.946 41.177 -0.261 1 99.75 ? C9 QAJ 601 B 1 HETATM 26 N N10 QAJ . . . F 2 -34.411 38.423 3.41 1 162.35 ? N10 QAJ 601 B 1 HETATM 27 N N2 QAJ . . . F 2 -27.012 46.065 2.885 1 55.39 ? N2 QAJ 601 B 1 HETATM 28 N N4 QAJ . . . F 2 -25.681 44.773 -0.162 1 58.27 ? N4 QAJ 601 B 1 HETATM 29 N N5 QAJ . . . F 2 -24.171 42.81 -0.24 1 68.55 ? N5 QAJ 601 B 1 HETATM 30 N N6 QAJ . . . F 2 -22.136 38.525 2.353 1 192.64 ? N6 QAJ 601 B 1 HETATM 31 N N7 QAJ . . . F 2 -31.742 45.064 4.64 1 70.25 ? N7 QAJ 601 B 1 HETATM 32 N N8 QAJ . . . F 2 -32.507 44.207 5.321 1 80.33 ? N8 QAJ 601 B 1 HETATM 33 N N9 QAJ . . . F 2 -34.519 42.716 5.224 1 77.46 ? N9 QAJ 601 B 1 HETATM 34 O O1 QAJ . . . F 2 -22.85 42.509 1.535 1 84.82 ? O1 QAJ 601 B 1 HETATM 35 O O2 QAJ . . . F 2 -35.537 42.175 3.318 1 70.12 ? O2 QAJ 601 B 1 HETATM 36 S S1 QAJ . . . F 2 -25.319 43.918 2.217 1 61.12 ? S1 QAJ 601 B 1 HETATM 37 S S2 QAJ . . . F 2 -33.535 44.382 2.975 1 73.65 ? S2 QAJ 601 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 37 #