data_6UNJ # _model_server_result.job_id 48UiNzbPj2dF-c5E2zXDKQ _model_server_result.datetime_utc '2024-11-05 12:24:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6unj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6UNJ # _exptl.entry_id 6UNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.04 _cell.angle_gamma 90 _cell.entry_id 6UNJ _cell.length_a 152.989 _cell.length_b 98.08 _cell.length_c 93.429 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1,2 B,E,F 2 1,3 A,C,D 3 1,2 B,E,F 3 4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -104.597791 0 154.839317 3 'crystal symmetry operation' 2_659 -x+1,y,-z+4 -1 0 0 0 1 0 0 0 -1 -56.206583 0 309.678635 4 'crystal symmetry operation' 3_454 x-1/2,y+1/2,z-1 1 0 0 0 1 0 0 0 1 -24.195604 49.04 -77.419659 5 'crystal symmetry operation' 4_558 -x+1/2,y+1/2,-z+3 -1 0 0 0 1 0 0 0 -1 -80.402187 49.04 232.258976 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6UNJ _atom_sites.fract_transf_matrix[1][1] 0.006536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004416 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 QDY A 1 602 700 QDY 16A . E 2 HEM B 1 601 500 HEM HEM . F 3 QDY B 1 602 700 QDY 16A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -31.897 -20.634 92.98 1 66.36 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . C 2 -28.549 -23.213 90.56 1 54.44 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . C 2 -30.996 -27.252 91.568 1 79.16 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . C 2 -34.179 -24.768 94.251 1 61.11 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . C 2 -30.783 -20.966 92.223 1 82.67 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . C 2 -29.779 -20.058 91.683 1 60.46 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . C 2 -28.869 -20.781 91.025 1 59.1 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . C 2 -29.256 -22.168 91.106 1 64.18 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . C 2 -27.613 -20.259 90.299 1 60.97 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . C 2 -29.733 -18.529 91.85 1 61.22 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . C 2 -28.73 -18.272 92.968 1 60.81 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . C 2 -28.407 -16.804 93.086 1 82.39 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . C 2 -27.373 -16.508 93.746 1 70.1 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . C 2 -29.162 -15.945 92.54 1 73.57 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . C 2 -28.932 -24.531 90.614 1 61.4 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . C 2 -28.248 -25.627 89.964 1 60.05 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . C 2 -28.939 -26.749 90.242 1 60.79 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . C 2 -30.062 -26.377 91.07 1 78.21 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . C 2 -26.965 -25.428 89.128 1 80.03 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . C 2 -28.688 -28.216 89.843 1 75.46 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . C 2 -27.628 -28.611 89.14 1 92.24 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . C 2 -32.023 -26.931 92.423 1 84.06 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . C 2 -32.88 -27.893 93.076 1 76.17 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . C 2 -33.771 -27.239 93.815 1 76.63 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . C 2 -33.501 -25.813 93.666 1 77.72 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . C 2 -32.792 -29.429 92.942 1 53.71 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . C 2 -34.843 -27.976 94.659 1 59.37 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . C 2 -35.804 -27.346 95.338 1 77.74 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . C 2 -33.845 -23.436 94.123 1 70.7 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . C 2 -34.559 -22.325 94.722 1 63.31 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . C 2 -33.935 -21.194 94.392 1 55.17 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . C 2 -32.794 -21.531 93.546 1 63.5 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . C 2 -35.82 -22.405 95.605 1 71.55 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . C 2 -34.418 -19.793 94.841 1 52.2 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . C 2 -33.34 -19.06 95.634 1 84.72 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . C 2 -33.911 -17.87 96.373 1 100.09 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . C 2 -34.05 -17.949 97.624 1 100.61 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . C 2 -34.232 -16.841 95.718 1 97.32 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . C 2 -30.426 -22.252 91.84 1 75.82 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . C 2 -30.042 -25.015 91.271 1 64.11 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . C 2 -32.423 -25.662 92.803 1 77.71 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . C 2 -32.773 -22.92 93.405 1 64.17 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . C 2 -31.417 -23.955 92.289 1 84.69 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #