data_6UNJ
#
_model_server_result.job_id            j4gRMyufy_L4llvgO3iA9w 
_model_server_result.datetime_utc      '2024-11-26 15:15:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6unj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    6UNJ 
#
_exptl.entry_id    6UNJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              569.757 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.04 
_cell.angle_gamma         90 
_cell.entry_id            6UNJ 
_cell.length_a            152.989 
_cell.length_b            98.08 
_cell.length_c            93.429 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UNJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1,2 
B,E,F 2 1,3 
A,C,D 3 1,2 
B,E,F 3 4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -104.597791 0 154.839317 
3 'crystal symmetry operation' 2_659 -x+1,y,-z+4 -1 0 0 0 1 0 0 0 -1 -56.206583 0 309.678635 
4 'crystal symmetry operation' 3_454 x-1/2,y+1/2,z-1 1 0 0 0 1 0 0 0 1 -24.195604 49.04 -77.419659 
5 'crystal symmetry operation' 4_558 -x+1/2,y+1/2,-z+3 -1 0 0 0 1 0 0 0 -1 -80.402187 49.04 232.258976 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C34 H39 N3 O3 S' 
_chem_comp.formula_weight    569.757 
_chem_comp.id                QDY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 QDY doub 357 n y 
C18 C19 QDY sing 358 n y 
N27 C28 QDY doub 359 n y 
N27 C26 QDY sing 360 n y 
C17 C16 QDY sing 361 n y 
C19 C14 QDY doub 362 n y 
C16 C15 QDY doub 363 n y 
C14 C15 QDY sing 364 n y 
C14 C13 QDY sing 365 n n 
C28 C29 QDY sing 366 n y 
C13 C12 QDY sing 367 n n 
C26 C25 QDY doub 368 n y 
O21 C20 QDY doub 369 n n 
C29 C30 QDY doub 370 n y 
C12 C20 QDY sing 371 n n 
C12 S11 QDY sing 372 n n 
C20 N22 QDY sing 373 n n 
C25 C30 QDY sing 374 n y 
C25 C24 QDY sing 375 n n 
S11 C10 QDY sing 376 n n 
C24 C23 QDY sing 377 n n 
N22 C23 QDY sing 378 n n 
C03 C02 QDY sing 379 n n 
C10 C09 QDY sing 380 n n 
C02 C04 QDY sing 381 n n 
C02 C01 QDY sing 382 n n 
C02 O05 QDY sing 383 n n 
O07 C06 QDY doub 384 n n 
C06 N08 QDY sing 385 n n 
C06 O05 QDY sing 386 n n 
C09 N08 QDY sing 387 n n 
C09 C31 QDY sing 388 n n 
C31 C32 QDY sing 389 n n 
C41 C32 QDY doub 390 n y 
C41 C40 QDY sing 391 n y 
C32 C33 QDY sing 392 n y 
C40 C39 QDY doub 393 n y 
C33 C34 QDY doub 394 n y 
C33 C38 QDY sing 395 n y 
C39 C38 QDY sing 396 n y 
C34 C35 QDY sing 397 n y 
C38 C37 QDY doub 398 n y 
C35 C36 QDY doub 399 n y 
C37 C36 QDY sing 400 n y 
C10 H1 QDY sing 401 n n 
C10 H2 QDY sing 402 n n 
C12 H3 QDY sing 403 n n 
C13 H4 QDY sing 404 n n 
C13 H5 QDY sing 405 n n 
C15 H6 QDY sing 406 n n 
C16 H7 QDY sing 407 n n 
C17 H8 QDY sing 408 n n 
C18 H9 QDY sing 409 n n 
C19 H10 QDY sing 410 n n 
C01 H11 QDY sing 411 n n 
C01 H12 QDY sing 412 n n 
C01 H13 QDY sing 413 n n 
C03 H14 QDY sing 414 n n 
C03 H15 QDY sing 415 n n 
C03 H16 QDY sing 416 n n 
C04 H17 QDY sing 417 n n 
C04 H18 QDY sing 418 n n 
C04 H19 QDY sing 419 n n 
C09 H20 QDY sing 420 n n 
C23 H21 QDY sing 421 n n 
C23 H22 QDY sing 422 n n 
C24 H23 QDY sing 423 n n 
C24 H24 QDY sing 424 n n 
C26 H25 QDY sing 425 n n 
C28 H26 QDY sing 426 n n 
C29 H27 QDY sing 427 n n 
C30 H28 QDY sing 428 n n 
C31 H29 QDY sing 429 n n 
C31 H30 QDY sing 430 n n 
C34 H31 QDY sing 431 n n 
C35 H32 QDY sing 432 n n 
C36 H33 QDY sing 433 n n 
C37 H34 QDY sing 434 n n 
C39 H35 QDY sing 435 n n 
C40 H36 QDY sing 436 n n 
C41 H37 QDY sing 437 n n 
N08 H38 QDY sing 438 n n 
N22 H39 QDY sing 439 n n 
#
_atom_sites.entry_id                     6UNJ 
_atom_sites.fract_transf_matrix[1][1]    0.006536 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004416 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010196 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012917 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 QDY A 1 602 700 QDY 16A . 
E 2 HEM B 1 601 500 HEM HEM . 
F 3 QDY B 1 602 700 QDY 16A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 QDY . . . D 3 -36.942 -16.747 88.5 1 103.65 ? C10 QDY 602 A 1 
HETATM 2 C C12 QDY . . . D 3 -34.633 -18.614 88.961 1 89.83 ? C12 QDY 602 A 1 
HETATM 3 C C13 QDY . . . D 3 -33.131 -18.595 89.246 1 98.07 ? C13 QDY 602 A 1 
HETATM 4 C C14 QDY . . . D 3 -32.256 -18.575 88.033 1 115.71 ? C14 QDY 602 A 1 
HETATM 5 C C15 QDY . . . D 3 -32.06 -19.73 87.284 1 112.01 ? C15 QDY 602 A 1 
HETATM 6 C C16 QDY . . . D 3 -31.255 -19.737 86.156 1 132.26 ? C16 QDY 602 A 1 
HETATM 7 C C17 QDY . . . D 3 -30.628 -18.573 85.734 1 143.87 ? C17 QDY 602 A 1 
HETATM 8 C C18 QDY . . . D 3 -30.807 -17.411 86.463 1 138.08 ? C18 QDY 602 A 1 
HETATM 9 C C19 QDY . . . D 3 -31.613 -17.412 87.593 1 129.29 ? C19 QDY 602 A 1 
HETATM 10 C C01 QDY . . . D 3 -34.687 -18.406 81.934 1 123.01 ? C01 QDY 602 A 1 
HETATM 11 C C02 QDY . . . D 3 -34.53 -17.186 82.831 1 123.47 ? C02 QDY 602 A 1 
HETATM 12 C C03 QDY . . . D 3 -33.263 -17.376 83.696 1 130.63 ? C03 QDY 602 A 1 
HETATM 13 C C04 QDY . . . D 3 -34.297 -15.95 81.942 1 118.71 ? C04 QDY 602 A 1 
HETATM 14 C C06 QDY . . . D 3 -35.913 -17.685 84.886 1 117.88 ? C06 QDY 602 A 1 
HETATM 15 C C09 QDY . . . D 3 -37.172 -17.621 87.23 1 93.61 ? C09 QDY 602 A 1 
HETATM 16 C C20 QDY . . . D 3 -35.39 -19.403 90 1 107.88 ? C20 QDY 602 A 1 
HETATM 17 C C23 QDY . . . D 3 -37.038 -21.223 90.582 1 110.93 ? C23 QDY 602 A 1 
HETATM 18 C C24 QDY . . . D 3 -36.736 -22.726 90.533 1 112.25 ? C24 QDY 602 A 1 
HETATM 19 C C25 QDY . . . D 3 -35.461 -23.095 89.855 1 111.83 ? C25 QDY 602 A 1 
HETATM 20 C C26 QDY . . . D 3 -34.276 -23.288 90.573 1 119.67 ? C26 QDY 602 A 1 
HETATM 21 C C28 QDY . . . D 3 -33.03 -23.768 88.698 1 109.35 ? C28 QDY 602 A 1 
HETATM 22 C C29 QDY . . . D 3 -34.15 -23.595 87.883 1 116.51 ? C29 QDY 602 A 1 
HETATM 23 C C30 QDY . . . D 3 -35.36 -23.257 88.476 1 116.42 ? C30 QDY 602 A 1 
HETATM 24 C C31 QDY . . . D 3 -38.723 -17.846 87 1 86.7 ? C31 QDY 602 A 1 
HETATM 25 C C32 QDY . . . D 3 -39.224 -19.28 87.11 1 95.64 ? C32 QDY 602 A 1 
HETATM 26 C C33 QDY . . . D 3 -40.249 -19.675 88.036 1 97.58 ? C33 QDY 602 A 1 
HETATM 27 C C34 QDY . . . D 3 -40.873 -18.76 88.92 1 114.05 ? C34 QDY 602 A 1 
HETATM 28 C C35 QDY . . . D 3 -41.844 -19.147 89.797 1 115.07 ? C35 QDY 602 A 1 
HETATM 29 C C36 QDY . . . D 3 -42.274 -20.484 89.852 1 114.01 ? C36 QDY 602 A 1 
HETATM 30 C C37 QDY . . . D 3 -41.701 -21.401 89.025 1 105.88 ? C37 QDY 602 A 1 
HETATM 31 C C38 QDY . . . D 3 -40.688 -21.02 88.109 1 81.89 ? C38 QDY 602 A 1 
HETATM 32 C C39 QDY . . . D 3 -40.11 -21.99 87.258 1 80.82 ? C39 QDY 602 A 1 
HETATM 33 C C40 QDY . . . D 3 -39.141 -21.607 86.381 1 102.82 ? C40 QDY 602 A 1 
HETATM 34 C C41 QDY . . . D 3 -38.697 -20.257 86.308 1 107.94 ? C41 QDY 602 A 1 
HETATM 35 N N08 QDY . . . D 3 -36.469 -17.022 86.039 1 112.74 ? N08 QDY 602 A 1 
HETATM 36 N N22 QDY . . . D 3 -36.269 -20.423 89.64 1 107.56 ? N22 QDY 602 A 1 
HETATM 37 N N27 QDY . . . D 3 -33.086 -23.621 90.035 1 119.31 ? N27 QDY 602 A 1 
HETATM 38 O O05 QDY . . . D 3 -35.675 -16.953 83.73 1 124.88 ? O05 QDY 602 A 1 
HETATM 39 O O07 QDY . . . D 3 -35.689 -18.894 84.986 1 91.05 ? O07 QDY 602 A 1 
HETATM 40 O O21 QDY . . . D 3 -35.274 -19.195 91.2 1 131.48 ? O21 QDY 602 A 1 
HETATM 41 S S11 QDY . . . D 3 -35.215 -16.881 89.045 1 118.63 ? S11 QDY 602 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           41 
#