data_6UNK # _model_server_result.job_id tr5zdaDvF5VHVatyUj55zQ _model_server_result.datetime_utc '2025-06-20 15:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6unk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6UNK # _exptl.entry_id 6UNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 569.757 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UNK _cell.length_a 78.269 _cell.length_b 102.27 _cell.length_c 128.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,3 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -102.27 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -102.27 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N27 QE4 . A QE4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? # _chem_comp.formula 'C34 H39 N3 O3 S' _chem_comp.formula_weight 569.757 _chem_comp.id QE4 _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C36 C35 QE4 doub 357 n y C36 C37 QE4 sing 358 n y C35 C34 QE4 sing 359 n y C04 C02 QE4 sing 360 n n C37 C38 QE4 doub 361 n y C34 C33 QE4 doub 362 n y C01 C02 QE4 sing 363 n n C28 C29 QE4 doub 364 n y C28 N27 QE4 sing 365 n y C02 O05 QE4 sing 366 n n C02 C03 QE4 sing 367 n n C29 C30 QE4 sing 368 n y C38 C33 QE4 sing 369 n y C38 C39 QE4 sing 370 n y C33 C32 QE4 sing 371 n y O05 C06 QE4 sing 372 n n N27 C26 QE4 doub 373 n y C39 C40 QE4 doub 374 n y C30 C25 QE4 doub 375 n y C32 C31 QE4 sing 376 n n C32 C41 QE4 doub 377 n y C31 C09 QE4 sing 378 n n C06 N08 QE4 sing 379 n n C06 O07 QE4 doub 380 n n N08 C09 QE4 sing 381 n n C26 C25 QE4 sing 382 n y C09 C10 QE4 sing 383 n n C25 C24 QE4 sing 384 n n C40 C41 QE4 sing 385 n y C24 C23 QE4 sing 386 n n C10 S11 QE4 sing 387 n n N22 C23 QE4 sing 388 n n N22 C20 QE4 sing 389 n n C12 C13 QE4 sing 390 n n C12 C20 QE4 sing 391 n n C12 S11 QE4 sing 392 n n C19 C18 QE4 doub 393 n y C19 C14 QE4 sing 394 n y C13 C14 QE4 sing 395 n n C20 O21 QE4 doub 396 n n C18 C17 QE4 sing 397 n y C14 C15 QE4 doub 398 n y C17 C16 QE4 doub 399 n y C15 C16 QE4 sing 400 n y C01 H1 QE4 sing 401 n n C01 H2 QE4 sing 402 n n C01 H3 QE4 sing 403 n n C03 H4 QE4 sing 404 n n C03 H5 QE4 sing 405 n n C03 H6 QE4 sing 406 n n C04 H7 QE4 sing 407 n n C04 H8 QE4 sing 408 n n C04 H9 QE4 sing 409 n n C09 H10 QE4 sing 410 n n C10 H11 QE4 sing 411 n n C10 H12 QE4 sing 412 n n C12 H13 QE4 sing 413 n n C13 H14 QE4 sing 414 n n C13 H15 QE4 sing 415 n n C15 H16 QE4 sing 416 n n C16 H17 QE4 sing 417 n n C17 H18 QE4 sing 418 n n C18 H19 QE4 sing 419 n n C19 H20 QE4 sing 420 n n C23 H21 QE4 sing 421 n n C23 H22 QE4 sing 422 n n C24 H23 QE4 sing 423 n n C24 H24 QE4 sing 424 n n C26 H25 QE4 sing 425 n n C28 H26 QE4 sing 426 n n C29 H27 QE4 sing 427 n n C30 H28 QE4 sing 428 n n C31 H29 QE4 sing 429 n n C31 H30 QE4 sing 430 n n C34 H31 QE4 sing 431 n n C35 H32 QE4 sing 432 n n C36 H33 QE4 sing 433 n n C37 H34 QE4 sing 434 n n C39 H35 QE4 sing 435 n n C40 H36 QE4 sing 436 n n C41 H37 QE4 sing 437 n n N08 H38 QE4 sing 438 n n N22 H39 QE4 sing 439 n n # _atom_sites.entry_id 6UNK _atom_sites.fract_transf_matrix[1][1] 0.012776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 QE4 A 1 602 700 QE4 18H . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QE4 . . . C 3 -16.041 -40.147 -11.519 1 152.53 ? C01 QE4 602 A 1 HETATM 2 C C02 QE4 . . . C 3 -14.63 -39.618 -11.314 1 144.26 ? C02 QE4 602 A 1 HETATM 3 C C03 QE4 . . . C 3 -13.804 -40.519 -10.361 1 144.59 ? C03 QE4 602 A 1 HETATM 4 C C04 QE4 . . . C 3 -13.89 -39.639 -12.713 1 139.41 ? C04 QE4 602 A 1 HETATM 5 C C06 QE4 . . . C 3 -15.334 -37.773 -9.676 1 142.42 ? C06 QE4 602 A 1 HETATM 6 C C09 QE4 . . . C 3 -16.705 -35.752 -8.775 1 121.74 ? C09 QE4 602 A 1 HETATM 7 C C10 QE4 . . . C 3 -17.021 -36.316 -7.301 1 162.3 ? C10 QE4 602 A 1 HETATM 8 C C12 QE4 . . . C 3 -15.993 -33.489 -6.936 1 157.77 ? C12 QE4 602 A 1 HETATM 9 C C13 QE4 . . . C 3 -14.489 -33.2 -6.61 1 136.29 ? C13 QE4 602 A 1 HETATM 10 C C14 QE4 . . . C 3 -14.091 -31.803 -6.011 1 139.9 ? C14 QE4 602 A 1 HETATM 11 C C15 QE4 . . . C 3 -14.599 -31.362 -4.746 1 146.89 ? C15 QE4 602 A 1 HETATM 12 C C16 QE4 . . . C 3 -14.213 -30.099 -4.226 1 133.94 ? C16 QE4 602 A 1 HETATM 13 C C17 QE4 . . . C 3 -13.311 -29.258 -4.943 1 128.6 ? C17 QE4 602 A 1 HETATM 14 C C18 QE4 . . . C 3 -12.789 -29.684 -6.2 1 126.07 ? C18 QE4 602 A 1 HETATM 15 C C19 QE4 . . . C 3 -13.183 -30.942 -6.717 1 141.11 ? C19 QE4 602 A 1 HETATM 16 C C20 QE4 . . . C 3 -17.033 -32.414 -6.507 1 138.72 ? C20 QE4 602 A 1 HETATM 17 C C23 QE4 . . . C 3 -18.477 -30.297 -6.748 1 82.48 ? C23 QE4 602 A 1 HETATM 18 C C24 QE4 . . . C 3 -18.452 -28.867 -7.314 1 75.23 ? C24 QE4 602 A 1 HETATM 19 C C25 QE4 . . . C 3 -19.011 -28.726 -8.746 1 62.41 ? C25 QE4 602 A 1 HETATM 20 C C26 QE4 . . . C 3 -20.313 -28.186 -8.996 1 72.54 ? C26 QE4 602 A 1 HETATM 21 C C28 QE4 . . . C 3 -20.108 -28.459 -11.338 1 80.39 ? C28 QE4 602 A 1 HETATM 22 C C29 QE4 . . . C 3 -18.814 -29.018 -11.184 1 96.92 ? C29 QE4 602 A 1 HETATM 23 C C30 QE4 . . . C 3 -18.267 -29.158 -9.872 1 50.97 ? C30 QE4 602 A 1 HETATM 24 C C31 QE4 . . . C 3 -18.011 -35.927 -9.735 1 92.02 ? C31 QE4 602 A 1 HETATM 25 C C32 QE4 . . . C 3 -18.851 -34.662 -9.833 1 79.83 ? C32 QE4 602 A 1 HETATM 26 C C33 QE4 . . . C 3 -19.044 -33.922 -11.056 1 99.44 ? C33 QE4 602 A 1 HETATM 27 C C34 QE4 . . . C 3 -18.427 -34.46 -12.238 1 123.65 ? C34 QE4 602 A 1 HETATM 28 C C35 QE4 . . . C 3 -18.597 -33.766 -13.471 1 132.79 ? C35 QE4 602 A 1 HETATM 29 C C36 QE4 . . . C 3 -19.366 -32.571 -13.514 1 129.89 ? C36 QE4 602 A 1 HETATM 30 C C37 QE4 . . . C 3 -19.974 -32.049 -12.338 1 111.01 ? C37 QE4 602 A 1 HETATM 31 C C38 QE4 . . . C 3 -19.785 -32.763 -11.107 1 83.76 ? C38 QE4 602 A 1 HETATM 32 C C39 QE4 . . . C 3 -20.406 -32.213 -9.935 1 96.81 ? C39 QE4 602 A 1 HETATM 33 C C40 QE4 . . . C 3 -20.234 -32.913 -8.704 1 109.32 ? C40 QE4 602 A 1 HETATM 34 C C41 QE4 . . . C 3 -19.453 -34.126 -8.666 1 99.36 ? C41 QE4 602 A 1 HETATM 35 N N08 QE4 . . . C 3 -15.435 -36.341 -9.343 1 127.09 ? N08 QE4 602 A 1 HETATM 36 N N22 QE4 . . . C 3 -17.418 -31.24 -7.27 1 94.32 ? N22 QE4 602 A 1 HETATM 37 N N27 QE4 . . . C 3 -20.8 -28.053 -10.25 1 51.46 ? N27 QE4 602 A 1 HETATM 38 O O05 QE4 . . . C 3 -14.665 -38.205 -10.864 1 146.35 ? O05 QE4 602 A 1 HETATM 39 O O07 QE4 . . . C 3 -15.824 -38.641 -8.902 1 143.99 ? O07 QE4 602 A 1 HETATM 40 O O21 QE4 . . . C 3 -17.621 -32.585 -5.392 1 139.66 ? O21 QE4 602 A 1 HETATM 41 S S11 QE4 . . . C 3 -16.469 -35.105 -6.081 1 216.94 ? S11 QE4 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #