data_6UNM
#
_model_server_result.job_id            8NZcAAeA9kwc12DtmJWRsA 
_model_server_result.datetime_utc      '2025-06-20 17:07:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6unm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    6UNM 
#
_exptl.entry_id    6UNM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              617.8 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-3-(naphthalen-1-yl)-1-oxo-1-{(E)-[2-(pyridin-3-yl)ethylidene]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          123.57 
_cell.angle_gamma         90 
_cell.entry_id            6UNM 
_cell.length_a            149.53 
_cell.length_b            97.91 
_cell.length_c            92.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UNM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,E 1 1,2 
A,C,D 2 1,3 
A,C,D 3 1,3 
B,E 3 4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 47.454441 0 153.810729 
3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 3_454 x-1/2,y+1/2,z-1 1 0 0 0 1 0 0 0 1 -23.727221 48.955 -76.905364 
5 'crystal symmetry operation' 4_556 -x+1/2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 23.727221 48.955 76.905364 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 D N33 QDP . A QDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
#
_chem_comp.formula           'C38 H39 N3 O3 S' 
_chem_comp.formula_weight    617.8 
_chem_comp.id                QDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-3-(naphthalen-1-yl)-1-oxo-1-{(E)-[2-(pyridin-3-yl)ethylidene]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C19 QDP doub 357 n y 
C18 C17 QDP sing 358 n y 
C19 C20 QDP sing 359 n y 
C17 C16 QDP doub 360 n y 
C04 C02 QDP sing 361 n n 
C01 C02 QDP sing 362 n n 
C16 C15 QDP sing 363 n y 
C20 C21 QDP doub 364 n y 
C20 C15 QDP sing 365 n y 
C03 C02 QDP sing 366 n n 
C02 O05 QDP sing 367 n n 
C21 C22 QDP sing 368 n y 
C15 C14 QDP doub 369 n y 
C44 C45 QDP doub 370 n y 
C44 C43 QDP sing 371 n y 
C45 C36 QDP sing 372 n y 
O05 C06 QDP sing 373 n n 
C22 C23 QDP doub 374 n y 
C14 C23 QDP sing 375 n y 
C14 C13 QDP sing 376 n n 
C43 C42 QDP doub 377 n y 
C35 C36 QDP sing 378 n n 
C35 C09 QDP sing 379 n n 
C36 C37 QDP doub 380 n y 
C13 C12 QDP sing 381 n n 
C06 N08 QDP sing 382 n n 
C06 O07 QDP doub 383 n n 
C09 N08 QDP sing 384 n n 
C09 C10 QDP sing 385 n n 
C42 C37 QDP sing 386 n y 
C42 C41 QDP sing 387 n y 
C31 C30 QDP doub 388 n y 
C31 C32 QDP sing 389 n y 
C37 C38 QDP sing 390 n y 
C30 C29 QDP sing 391 n y 
C12 S11 QDP sing 392 n n 
C12 C24 QDP sing 393 n n 
S11 C10 QDP sing 394 n n 
C32 N33 QDP doub 395 n y 
C41 C40 QDP doub 396 n y 
N26 C24 QDP sing 397 n n 
N26 C27 QDP doub 398 n n 
C38 C39 QDP doub 399 n y 
C29 C28 QDP sing 400 n n 
C29 C34 QDP doub 401 n y 
C24 O25 QDP doub 402 n n 
C28 C27 QDP sing 403 n n 
N33 C34 QDP sing 404 n y 
C40 C39 QDP sing 405 n y 
C12 H1 QDP sing 406 n n 
C01 H2 QDP sing 407 n n 
C01 H3 QDP sing 408 n n 
C01 H4 QDP sing 409 n n 
C03 H5 QDP sing 410 n n 
C03 H6 QDP sing 411 n n 
C03 H7 QDP sing 412 n n 
C04 H8 QDP sing 413 n n 
C04 H9 QDP sing 414 n n 
C04 H10 QDP sing 415 n n 
C09 H11 QDP sing 416 n n 
C10 H12 QDP sing 417 n n 
C10 H13 QDP sing 418 n n 
C13 H14 QDP sing 419 n n 
C13 H15 QDP sing 420 n n 
C16 H16 QDP sing 421 n n 
C17 H17 QDP sing 422 n n 
C18 H18 QDP sing 423 n n 
C19 H19 QDP sing 424 n n 
C21 H20 QDP sing 425 n n 
C22 H21 QDP sing 426 n n 
C23 H22 QDP sing 427 n n 
C27 H23 QDP sing 428 n n 
C28 H24 QDP sing 429 n n 
C28 H25 QDP sing 430 n n 
C30 H26 QDP sing 431 n n 
C31 H27 QDP sing 432 n n 
C32 H28 QDP sing 433 n n 
C34 H29 QDP sing 434 n n 
C35 H30 QDP sing 435 n n 
C35 H31 QDP sing 436 n n 
C38 H32 QDP sing 437 n n 
C39 H33 QDP sing 438 n n 
C40 H34 QDP sing 439 n n 
C41 H35 QDP sing 440 n n 
C43 H36 QDP sing 441 n n 
C44 H37 QDP sing 442 n n 
C45 H38 QDP sing 443 n n 
N08 H39 QDP sing 444 n n 
#
_atom_sites.entry_id                     6UNM 
_atom_sites.fract_transf_matrix[1][1]    0.006688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004438 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010213 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013003 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 QDP A 1 602 700 QDP 73N . 
E 2 HEM B 1 601 500 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 QDP . . . D 3 13.059 -18.747 10.969 1 157.12 ? C12 QDP 602 A 1 
HETATM 2 C C20 QDP . . . D 3 12.241 -21.801 7.099 1 172.78 ? C20 QDP 602 A 1 
HETATM 3 C C01 QDP . . . D 3 17.101 -14.292 6.886 1 159.75 ? C01 QDP 602 A 1 
HETATM 4 C C02 QDP . . . D 3 16.595 -12.925 7.372 1 163.86 ? C02 QDP 602 A 1 
HETATM 5 C C03 QDP . . . D 3 17.681 -11.87 7.249 1 160.49 ? C03 QDP 602 A 1 
HETATM 6 C C04 QDP . . . D 3 15.417 -12.458 6.477 1 154.39 ? C04 QDP 602 A 1 
HETATM 7 C C06 QDP . . . D 3 16.952 -13.598 9.747 1 174.41 ? C06 QDP 602 A 1 
HETATM 8 C C09 QDP . . . D 3 15.629 -15.822 9.905 1 178.47 ? C09 QDP 602 A 1 
HETATM 9 C C10 QDP . . . D 3 14.914 -16.073 11.282 1 179.31 ? C10 QDP 602 A 1 
HETATM 10 C C13 QDP . . . D 3 13.142 -18.998 9.489 1 143.75 ? C13 QDP 602 A 1 
HETATM 11 C C14 QDP . . . D 3 12.437 -20.108 8.864 1 136.89 ? C14 QDP 602 A 1 
HETATM 12 C C15 QDP . . . D 3 12.959 -20.73 7.699 1 153.91 ? C15 QDP 602 A 1 
HETATM 13 C C16 QDP . . . D 3 14.175 -20.363 7.055 1 155.47 ? C16 QDP 602 A 1 
HETATM 14 C C17 QDP . . . D 3 14.634 -20.986 5.928 1 170.8 ? C17 QDP 602 A 1 
HETATM 15 C C18 QDP . . . D 3 13.904 -22.046 5.33 1 184.04 ? C18 QDP 602 A 1 
HETATM 16 C C19 QDP . . . D 3 12.73 -22.431 5.913 1 185.34 ? C19 QDP 602 A 1 
HETATM 17 C C21 QDP . . . D 3 11.008 -22.226 7.696 1 167.1 ? C21 QDP 602 A 1 
HETATM 18 C C22 QDP . . . D 3 10.542 -21.616 8.816 1 140.76 ? C22 QDP 602 A 1 
HETATM 19 C C23 QDP . . . D 3 11.263 -20.548 9.4 1 127.18 ? C23 QDP 602 A 1 
HETATM 20 C C24 QDP . . . D 3 14.073 -19.566 11.78 1 138 ? C24 QDP 602 A 1 
HETATM 21 C C27 QDP . . . D 3 15.297 -21.687 12.376 1 118.32 ? C27 QDP 602 A 1 
HETATM 22 C C28 QDP . . . D 3 15.816 -23.025 11.814 1 100.66 ? C28 QDP 602 A 1 
HETATM 23 C C29 QDP . . . D 3 17.287 -23.146 11.63 1 90.42 ? C29 QDP 602 A 1 
HETATM 24 C C30 QDP . . . D 3 17.915 -22.825 10.434 1 107.44 ? C30 QDP 602 A 1 
HETATM 25 C C31 QDP . . . D 3 19.287 -22.932 10.257 1 114.15 ? C31 QDP 602 A 1 
HETATM 26 C C32 QDP . . . D 3 20.032 -23.384 11.333 1 120.87 ? C32 QDP 602 A 1 
HETATM 27 C C34 QDP . . . D 3 18.128 -23.577 12.647 1 95.59 ? C34 QDP 602 A 1 
HETATM 28 C C35 QDP . . . D 3 15.937 -17.14 8.99 1 175.76 ? C35 QDP 602 A 1 
HETATM 29 C C36 QDP . . . D 3 17.276 -17.897 9.052 1 161.54 ? C36 QDP 602 A 1 
HETATM 30 C C37 QDP . . . D 3 17.885 -18.398 10.275 1 145.79 ? C37 QDP 602 A 1 
HETATM 31 C C38 QDP . . . D 3 17.345 -18.252 11.579 1 129.89 ? C38 QDP 602 A 1 
HETATM 32 C C39 QDP . . . D 3 17.939 -18.729 12.701 1 121.69 ? C39 QDP 602 A 1 
HETATM 33 C C40 QDP . . . D 3 19.159 -19.409 12.605 1 122.63 ? C40 QDP 602 A 1 
HETATM 34 C C41 QDP . . . D 3 19.736 -19.589 11.403 1 129.99 ? C41 QDP 602 A 1 
HETATM 35 C C42 QDP . . . D 3 19.128 -19.096 10.22 1 148.16 ? C42 QDP 602 A 1 
HETATM 36 C C43 QDP . . . D 3 19.758 -19.302 8.965 1 147.41 ? C43 QDP 602 A 1 
HETATM 37 C C44 QDP . . . D 3 19.182 -18.837 7.833 1 148.21 ? C44 QDP 602 A 1 
HETATM 38 C C45 QDP . . . D 3 17.942 -18.14 7.872 1 155.6 ? C45 QDP 602 A 1 
HETATM 39 N N08 QDP . . . D 3 16.834 -14.983 10.07 1 179.37 ? N08 QDP 602 A 1 
HETATM 40 N N26 QDP . . . D 3 14.302 -20.94 11.578 1 117.03 ? N26 QDP 602 A 1 
HETATM 41 N N33 QDP . . . D 3 19.45 -23.699 12.501 1 101.26 ? N33 QDP 602 A 1 
HETATM 42 O O05 QDP . . . D 3 16.108 -13.103 8.723 1 175.77 ? O05 QDP 602 A 1 
HETATM 43 O O07 QDP . . . D 3 17.732 -12.825 10.298 1 159.45 ? O07 QDP 602 A 1 
HETATM 44 O O25 QDP . . . D 3 14.747 -19.01 12.62 1 153.48 ? O25 QDP 602 A 1 
HETATM 45 S S11 QDP . . . D 3 13.2 -16.853 11.17 1 179.73 ? S11 QDP 602 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           45 
#