data_6UNR # _model_server_result.job_id KyS4ydx3kE_0FFEydYXwoA _model_server_result.datetime_utc '2024-11-23 04:40:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6unr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6UNR # _exptl.entry_id 6UNR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UNR _cell.length_a 59.122 _cell.length_b 87.124 _cell.length_c 138.916 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 47 A LYS 216 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc2 A OE1 GLU 79 A GLU 248 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc3 A OE2 GLU 79 A GLU 248 1_555 H MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc4 A O VAL 86 A VAL 255 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 A O GLY 159 A GLY 328 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc6 A OD1 ASN 172 A ASN 341 1_555 J MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 A OD1 ASP 185 A ASP 354 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc8 A OD1 ASN 252 A ASN 421 1_555 I MG MG . A MG 508 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc9 A O VAL 266 A VAL 435 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6UNR _atom_sites.fract_transf_matrix[1][1] 0.016914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 MG A 1 502 2 MG MG . D 3 MG A 1 503 4 MG MG . E 3 MG A 1 504 5 MG MG . F 3 MG A 1 505 6 MG MG . G 3 MG A 1 506 8 MG MG . H 3 MG A 1 507 9 MG MG . I 3 MG A 1 508 10 MG MG . J 3 MG A 1 509 12 MG MG . K 4 HOH A 1 601 18 HOH HOH . K 4 HOH A 2 602 20 HOH HOH . K 4 HOH A 3 603 6 HOH HOH . K 4 HOH A 4 604 7 HOH HOH . K 4 HOH A 5 605 12 HOH HOH . K 4 HOH A 6 606 16 HOH HOH . K 4 HOH A 7 607 8 HOH HOH . K 4 HOH A 8 608 19 HOH HOH . K 4 HOH A 9 609 9 HOH HOH . K 4 HOH A 10 610 11 HOH HOH . K 4 HOH A 11 611 4 HOH HOH . K 4 HOH A 12 612 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 23.084 16.263 -15.37 1 129.03 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 23.394 16.747 -16.753 1 130.51 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 24.33 15.497 -14.773 1 134.1 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 21.828 15.295 -15.426 1 115.16 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 24.012 18.588 -14.121 1 132.06 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 23.569 19.621 -13.136 1 128.78 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 25.211 17.779 -13.537 1 125.5 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 22.698 17.575 -14.372 1 132.3 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 25.43 20.485 -15.575 1 130.08 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 26.816 20.054 -15.872 1 131.52 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 24.844 21.422 -16.637 1 122.56 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 24.426 19.245 -15.481 1 138.21 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 25.432 21.149 -14.134 1 121.93 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 26.412 22.116 -13.705 1 105.97 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 25.745 23.094 -12.768 1 91.6 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 25.512 24.343 -13.458 1 82.77 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 24.394 22.65 -12.205 1 82.74 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 24.278 22.988 -10.828 1 84.63 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 23.389 23.431 -13.057 1 78.5 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 22.182 23.691 -12.35 1 75.22 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 24.159 24.724 -13.314 1 75.77 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 23.746 25.433 -14.522 1 68.5 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 23.513 24.886 -15.758 1 60.95 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 23.158 25.76 -16.668 1 56.17 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 23.153 26.967 -15.986 1 59.08 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 22.859 28.283 -16.387 1 63.98 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 22.49 28.617 -17.627 1 65.46 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 22.952 29.259 -15.457 1 73.59 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 23.316 28.93 -14.213 1 73.6 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 23.617 27.726 -13.719 1 69.67 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 23.516 26.779 -14.66 1 65.36 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #