data_6UP3 # _model_server_result.job_id -FZyWszZHGAh6v0kiiwgvg _model_server_result.datetime_utc '2024-11-07 21:33:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6up3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6UP3 # _exptl.entry_id 6UP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UP3 _cell.length_a 66.446 _cell.length_b 116.147 _cell.length_c 132.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6UP3 _atom_sites.fract_transf_matrix[1][1] 0.01505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 1001 1 ANP ANP . C 3 HOH A 1 1101 8 HOH HOH . C 3 HOH A 2 1102 19 HOH HOH . C 3 HOH A 3 1103 23 HOH HOH . C 3 HOH A 4 1104 17 HOH HOH . C 3 HOH A 5 1105 3 HOH HOH . C 3 HOH A 6 1106 12 HOH HOH . C 3 HOH A 7 1107 1 HOH HOH . C 3 HOH A 8 1108 2 HOH HOH . C 3 HOH A 9 1109 21 HOH HOH . C 3 HOH A 10 1110 4 HOH HOH . C 3 HOH A 11 1111 22 HOH HOH . C 3 HOH A 12 1112 18 HOH HOH . C 3 HOH A 13 1113 10 HOH HOH . C 3 HOH A 14 1114 16 HOH HOH . C 3 HOH A 15 1115 20 HOH HOH . C 3 HOH A 16 1116 6 HOH HOH . C 3 HOH A 17 1117 15 HOH HOH . C 3 HOH A 18 1118 9 HOH HOH . C 3 HOH A 19 1119 11 HOH HOH . C 3 HOH A 20 1120 7 HOH HOH . C 3 HOH A 21 1121 13 HOH HOH . C 3 HOH A 22 1122 5 HOH HOH . C 3 HOH A 23 1123 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 3.303 24.249 17.119 1 88.76 ? PG ANP 1001 A 1 HETATM 2 O O1G ANP . . . B 2 3.52 25.701 17.409 1 85.38 ? O1G ANP 1001 A 1 HETATM 3 O O2G ANP . . . B 2 4.597 23.422 17.471 1 112.53 ? O2G ANP 1001 A 1 HETATM 4 O O3G ANP . . . B 2 2.105 23.719 18.014 1 94.03 ? O3G ANP 1001 A 1 HETATM 5 P PB ANP . . . B 2 1.738 23.071 15.094 1 46.94 ? PB ANP 1001 A 1 HETATM 6 O O1B ANP . . . B 2 1.229 22.391 16.322 1 62.77 ? O1B ANP 1001 A 1 HETATM 7 O O2B ANP . . . B 2 0.581 23.864 14.433 1 54.46 ? O2B ANP 1001 A 1 HETATM 8 N N3B ANP . . . B 2 3.007 24.092 15.452 1 58.62 ? N3B ANP 1001 A 1 HETATM 9 P PA ANP . . . B 2 3.666 21.495 13.835 1 52 ? PA ANP 1001 A 1 HETATM 10 O O1A ANP . . . B 2 4.208 22.297 12.709 1 51.33 ? O1A ANP 1001 A 1 HETATM 11 O O2A ANP . . . B 2 4.502 21.527 15.125 1 54.23 ? O2A ANP 1001 A 1 HETATM 12 O O3A ANP . . . B 2 2.162 21.954 14.104 1 49.84 ? O3A ANP 1001 A 1 HETATM 13 O O5' ANP . . . B 2 3.429 20.077 13.255 1 57.92 ? O5' ANP 1001 A 1 HETATM 14 C C5' ANP . . . B 2 2.542 19.988 12.133 1 54.07 ? C5' ANP 1001 A 1 HETATM 15 C C4' ANP . . . B 2 2.684 18.618 11.527 1 62.86 ? C4' ANP 1001 A 1 HETATM 16 O O4' ANP . . . B 2 4.086 18.288 11.405 1 61.44 ? O4' ANP 1001 A 1 HETATM 17 C C3' ANP . . . B 2 2.036 17.491 12.337 1 63.08 ? C3' ANP 1001 A 1 HETATM 18 O O3' ANP . . . B 2 1.311 16.58 11.522 1 65.41 ? O3' ANP 1001 A 1 HETATM 19 C C2' ANP . . . B 2 3.23 16.79 12.982 1 60.97 ? C2' ANP 1001 A 1 HETATM 20 O O2' ANP . . . B 2 2.97 15.407 13.144 1 72.05 ? O2' ANP 1001 A 1 HETATM 21 C C1' ANP . . . B 2 4.317 17.002 11.939 1 59.36 ? C1' ANP 1001 A 1 HETATM 22 N N9 ANP . . . B 2 5.663 16.954 12.485 1 64.3 ? N9 ANP 1001 A 1 HETATM 23 C C8 ANP . . . B 2 6.238 17.851 13.347 1 65.47 ? C8 ANP 1001 A 1 HETATM 24 N N7 ANP . . . B 2 7.473 17.564 13.695 1 61.2 ? N7 ANP 1001 A 1 HETATM 25 C C5 ANP . . . B 2 7.724 16.39 13.01 1 63.38 ? C5 ANP 1001 A 1 HETATM 26 C C6 ANP . . . B 2 8.87 15.554 12.938 1 69.33 ? C6 ANP 1001 A 1 HETATM 27 N N6 ANP . . . B 2 10.001 15.803 13.603 1 80.03 ? N6 ANP 1001 A 1 HETATM 28 N N1 ANP . . . B 2 8.794 14.45 12.16 1 66.69 ? N1 ANP 1001 A 1 HETATM 29 C C2 ANP . . . B 2 7.658 14.209 11.5 1 68.68 ? C2 ANP 1001 A 1 HETATM 30 N N3 ANP . . . B 2 6.528 14.917 11.488 1 64.29 ? N3 ANP 1001 A 1 HETATM 31 C C4 ANP . . . B 2 6.638 15.99 12.264 1 59.72 ? C4 ANP 1001 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #