data_6UPD # _model_server_result.job_id 9Qg9Tm3DgqSvJ7kIEdzv_g _model_server_result.datetime_utc '2024-11-22 13:55:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6upd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 6UPD # _exptl.entry_id 6UPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.61 _cell.angle_gamma 90 _cell.entry_id 6UPD _cell.length_a 46.767 _cell.length_b 52.955 _cell.length_c 108.762 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I 1 1 B,D,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 302 TRE 2 n C GLC 2 C 2 GLC A 302 TRE 2 n D GLC 1 D 1 GLC B 302 TRE 2 n D GLC 2 D 2 GLC B 302 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 sing covale ? covale2 D C1 GLC . D GLC 1 1_555 D O1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 sing metalc ? metalc1 A OD2 ASP 20 A ASP 20 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 A O ASP 22 A ASP 22 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 A OD1 ASP 198 A ASP 198 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 E MG MG . A MG 301 1_555 I O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 E MG MG . A MG 301 1_555 I O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc6 E MG MG . A MG 301 1_555 I O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc7 B OD2 ASP 20 B ASP 20 1_555 H MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 B O ASP 22 B ASP 22 1_555 H MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc9 B OD1 ASP 198 B ASP 198 1_555 H MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc10 H MG MG . B MG 303 1_555 J O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc11 H MG MG . B MG 303 1_555 J O HOH . B HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc12 H MG MG . B MG 303 1_555 J O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6UPD _atom_sites.fract_transf_matrix[1][1] 0.021383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 301 301 MG MG . F 4 CL A 1 303 1 CL CL . G 4 CL B 1 302 2 CL CL . H 3 MG B 1 303 1 MG MG . I 5 HOH A 1 401 83 HOH HOH . I 5 HOH A 2 402 111 HOH HOH . I 5 HOH A 3 403 69 HOH HOH . I 5 HOH A 4 404 54 HOH HOH . I 5 HOH A 5 405 44 HOH HOH . I 5 HOH A 6 406 32 HOH HOH . I 5 HOH A 7 407 30 HOH HOH . I 5 HOH A 8 408 106 HOH HOH . I 5 HOH A 9 409 77 HOH HOH . I 5 HOH A 10 410 6 HOH HOH . I 5 HOH A 11 411 19 HOH HOH . I 5 HOH A 12 412 64 HOH HOH . I 5 HOH A 13 413 51 HOH HOH . I 5 HOH A 14 414 89 HOH HOH . I 5 HOH A 15 415 98 HOH HOH . I 5 HOH A 16 416 50 HOH HOH . I 5 HOH A 17 417 112 HOH HOH . I 5 HOH A 18 418 92 HOH HOH . I 5 HOH A 19 419 95 HOH HOH . I 5 HOH A 20 420 45 HOH HOH . I 5 HOH A 21 421 33 HOH HOH . I 5 HOH A 22 422 3 HOH HOH . I 5 HOH A 23 423 61 HOH HOH . I 5 HOH A 24 424 72 HOH HOH . I 5 HOH A 25 425 25 HOH HOH . I 5 HOH A 26 426 2 HOH HOH . I 5 HOH A 27 427 49 HOH HOH . I 5 HOH A 28 428 20 HOH HOH . I 5 HOH A 29 429 119 HOH HOH . I 5 HOH A 30 430 70 HOH HOH . I 5 HOH A 31 431 60 HOH HOH . I 5 HOH A 32 432 57 HOH HOH . I 5 HOH A 33 433 107 HOH HOH . I 5 HOH A 34 434 26 HOH HOH . I 5 HOH A 35 435 38 HOH HOH . I 5 HOH A 36 436 5 HOH HOH . I 5 HOH A 37 437 90 HOH HOH . I 5 HOH A 38 438 65 HOH HOH . I 5 HOH A 39 439 15 HOH HOH . I 5 HOH A 40 440 7 HOH HOH . I 5 HOH A 41 441 29 HOH HOH . I 5 HOH A 42 442 42 HOH HOH . I 5 HOH A 43 443 127 HOH HOH . I 5 HOH A 44 444 9 HOH HOH . I 5 HOH A 45 445 132 HOH HOH . I 5 HOH A 46 446 17 HOH HOH . I 5 HOH A 47 447 122 HOH HOH . I 5 HOH A 48 448 62 HOH HOH . I 5 HOH A 49 449 31 HOH HOH . I 5 HOH A 50 450 36 HOH HOH . I 5 HOH A 51 451 85 HOH HOH . I 5 HOH A 52 452 28 HOH HOH . I 5 HOH A 53 453 1 HOH HOH . I 5 HOH A 54 454 8 HOH HOH . I 5 HOH A 55 455 128 HOH HOH . I 5 HOH A 56 456 34 HOH HOH . I 5 HOH A 57 457 108 HOH HOH . I 5 HOH A 58 458 91 HOH HOH . I 5 HOH A 59 459 27 HOH HOH . I 5 HOH A 60 460 11 HOH HOH . I 5 HOH A 61 461 16 HOH HOH . I 5 HOH A 62 462 88 HOH HOH . I 5 HOH A 63 463 23 HOH HOH . I 5 HOH A 64 464 110 HOH HOH . I 5 HOH A 65 465 39 HOH HOH . I 5 HOH A 66 466 71 HOH HOH . I 5 HOH A 67 467 117 HOH HOH . I 5 HOH A 68 468 66 HOH HOH . I 5 HOH A 69 469 14 HOH HOH . I 5 HOH A 70 470 100 HOH HOH . I 5 HOH A 71 471 4 HOH HOH . I 5 HOH A 72 472 135 HOH HOH . I 5 HOH A 73 473 86 HOH HOH . I 5 HOH A 74 474 63 HOH HOH . I 5 HOH A 75 475 43 HOH HOH . I 5 HOH A 76 476 76 HOH HOH . I 5 HOH A 77 477 48 HOH HOH . I 5 HOH A 78 478 67 HOH HOH . I 5 HOH A 79 479 58 HOH HOH . I 5 HOH A 80 480 105 HOH HOH . I 5 HOH A 81 481 84 HOH HOH . I 5 HOH A 82 482 125 HOH HOH . I 5 HOH A 83 483 80 HOH HOH . I 5 HOH A 84 484 99 HOH HOH . I 5 HOH A 85 485 81 HOH HOH . I 5 HOH A 86 486 126 HOH HOH . I 5 HOH A 87 487 59 HOH HOH . I 5 HOH A 88 488 37 HOH HOH . I 5 HOH A 89 489 53 HOH HOH . I 5 HOH A 90 490 10 HOH HOH . I 5 HOH A 91 491 24 HOH HOH . I 5 HOH A 92 492 74 HOH HOH . I 5 HOH A 93 493 131 HOH HOH . I 5 HOH A 94 494 134 HOH HOH . I 5 HOH A 95 495 75 HOH HOH . I 5 HOH A 96 496 123 HOH HOH . I 5 HOH A 97 497 79 HOH HOH . I 5 HOH A 98 498 121 HOH HOH . I 5 HOH A 99 499 116 HOH HOH . I 5 HOH A 100 500 87 HOH HOH . I 5 HOH A 101 501 120 HOH HOH . J 5 HOH B 1 401 78 HOH HOH . J 5 HOH B 2 402 118 HOH HOH . J 5 HOH B 3 403 96 HOH HOH . J 5 HOH B 4 404 52 HOH HOH . J 5 HOH B 5 405 113 HOH HOH . J 5 HOH B 6 406 41 HOH HOH . J 5 HOH B 7 407 103 HOH HOH . J 5 HOH B 8 408 12 HOH HOH . J 5 HOH B 9 409 115 HOH HOH . J 5 HOH B 10 410 56 HOH HOH . J 5 HOH B 11 411 137 HOH HOH . J 5 HOH B 12 412 40 HOH HOH . J 5 HOH B 13 413 35 HOH HOH . J 5 HOH B 14 414 46 HOH HOH . J 5 HOH B 15 415 21 HOH HOH . J 5 HOH B 16 416 18 HOH HOH . J 5 HOH B 17 417 13 HOH HOH . J 5 HOH B 18 418 138 HOH HOH . J 5 HOH B 19 419 47 HOH HOH . J 5 HOH B 20 420 73 HOH HOH . J 5 HOH B 21 421 97 HOH HOH . J 5 HOH B 22 422 104 HOH HOH . J 5 HOH B 23 423 139 HOH HOH . J 5 HOH B 24 424 133 HOH HOH . J 5 HOH B 25 425 55 HOH HOH . J 5 HOH B 26 426 136 HOH HOH . J 5 HOH B 27 427 109 HOH HOH . J 5 HOH B 28 428 124 HOH HOH . J 5 HOH B 29 429 93 HOH HOH . J 5 HOH B 30 430 130 HOH HOH . J 5 HOH B 31 431 22 HOH HOH . J 5 HOH B 32 432 68 HOH HOH . J 5 HOH B 33 433 114 HOH HOH . J 5 HOH B 34 434 101 HOH HOH . J 5 HOH B 35 435 129 HOH HOH . J 5 HOH B 36 436 82 HOH HOH . J 5 HOH B 37 437 94 HOH HOH . J 5 HOH B 38 438 102 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -16.299 _atom_site.Cartn_y -1.344 _atom_site.Cartn_z 2.887 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 303 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #