data_6UPW
#
_model_server_result.job_id            uhJFHYUXhKIRBG_py2KCPA 
_model_server_result.datetime_utc      '2024-12-26 12:57:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6upw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":401}' 
#
_entry.id    6UPW 
#
_exptl.entry_id    6UPW 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UPW 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UPW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLU 72 C GLU 72 1_555 B N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B C HIC 73 C HIC 73 1_555 B N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 D C GLU 72 B GLU 72 1_555 D N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 D C HIC 73 B HIC 73 1_555 D N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale5 E C GLU 72 A GLU 72 1_555 E N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 E C HIC 73 A HIC 73 1_555 E N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale7 F C GLU 72 D GLU 72 1_555 F N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 F C HIC 73 D HIC 73 1_555 F N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale9 G C GLU 72 E GLU 72 1_555 G N HIC 73 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale10 G C HIC 73 E HIC 73 1_555 G N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 H O3B ADP . C ADP 401 1_555 I MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc2 J O3B ADP . B ADP 401 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 L O3B ADP . A ADP 401 1_555 M MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc4 N O2B ADP . D ADP 401 1_555 O MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc5 P O3B ADP . E ADP 401 1_555 Q MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6UPW 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ADP C 1 401 375 ADP ADP . 
I 4 MG C 1 402 376 MG MG . 
J 3 ADP B 1 401 375 ADP ADP . 
K 4 MG B 1 402 376 MG MG . 
L 3 ADP A 1 401 375 ADP ADP . 
M 4 MG A 1 402 376 MG MG . 
N 3 ADP D 1 401 375 ADP ADP . 
O 4 MG D 1 402 376 MG MG . 
P 3 ADP E 1 401 375 ADP ADP . 
Q 4 MG E 1 402 376 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . P 3 263.614 280.473 198.534 1 44.85 ? PB ADP 401 E 1 
HETATM 2 O O1B ADP . . . P 3 264.738 281.226 197.892 1 44.85 ? O1B ADP 401 E 1 
HETATM 3 O O2B ADP . . . P 3 263.738 278.99 198.351 1 44.85 ? O2B ADP 401 E 1 
HETATM 4 O O3B ADP . . . P 3 263.399 280.864 199.97 1 44.85 ? O3B ADP 401 E 1 
HETATM 5 P PA ADP . . . P 3 260.898 281.557 198.186 1 44.85 ? PA ADP 401 E 1 
HETATM 6 O O1A ADP . . . P 3 260.902 282.997 197.809 1 44.85 ? O1A ADP 401 E 1 
HETATM 7 O O2A ADP . . . P 3 260.65 281.214 199.613 1 44.85 ? O2A ADP 401 E 1 
HETATM 8 O O3A ADP . . . P 3 262.288 280.907 197.733 1 44.85 ? O3A ADP 401 E 1 
HETATM 9 O O5' ADP . . . P 3 259.853 280.777 197.264 1 44.85 ? O5' ADP 401 E 1 
HETATM 10 C C5' ADP . . . P 3 260.313 280.14 196.05 1 44.85 ? C5' ADP 401 E 1 
HETATM 11 C C4' ADP . . . P 3 259.422 278.96 195.757 1 44.85 ? C4' ADP 401 E 1 
HETATM 12 O O4' ADP . . . P 3 258.045 279.347 195.983 1 44.85 ? O4' ADP 401 E 1 
HETATM 13 C C3' ADP . . . P 3 259.476 278.395 194.332 1 44.85 ? C3' ADP 401 E 1 
HETATM 14 O O3' ADP . . . P 3 259.67 276.989 194.363 1 44.85 ? O3' ADP 401 E 1 
HETATM 15 C C2' ADP . . . P 3 258.113 278.749 193.73 1 44.85 ? C2' ADP 401 E 1 
HETATM 16 O O2' ADP . . . P 3 257.641 277.748 192.856 1 44.85 ? O2' ADP 401 E 1 
HETATM 17 C C1' ADP . . . P 3 257.227 278.831 194.965 1 44.85 ? C1' ADP 401 E 1 
HETATM 18 N N9 ADP . . . P 3 256.082 279.721 194.819 1 44.85 ? N9 ADP 401 E 1 
HETATM 19 C C8 ADP . . . P 3 256.121 281.078 194.627 1 44.85 ? C8 ADP 401 E 1 
HETATM 20 N N7 ADP . . . P 3 254.935 281.624 194.539 1 44.85 ? N7 ADP 401 E 1 
HETATM 21 C C5 ADP . . . P 3 254.057 280.562 194.685 1 44.85 ? C5 ADP 401 E 1 
HETATM 22 C C6 ADP . . . P 3 252.653 280.491 194.685 1 44.85 ? C6 ADP 401 E 1 
HETATM 23 N N6 ADP . . . P 3 251.861 281.547 194.531 1 44.85 ? N6 ADP 401 E 1 
HETATM 24 N N1 ADP . . . P 3 252.09 279.273 194.856 1 44.85 ? N1 ADP 401 E 1 
HETATM 25 C C2 ADP . . . P 3 252.893 278.215 195.014 1 44.85 ? C2 ADP 401 E 1 
HETATM 26 N N3 ADP . . . P 3 254.22 278.162 195.032 1 44.85 ? N3 ADP 401 E 1 
HETATM 27 C C4 ADP . . . P 3 254.752 279.383 194.861 1 44.85 ? C4 ADP 401 E 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#