data_6UQE # _model_server_result.job_id cqU_cQW3HAQG0tpEjBrfvw _model_server_result.datetime_utc '2024-10-20 19:09:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":801}' # _entry.id 6UQE # _exptl.entry_id 6UQE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.247 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 GA N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id NH1 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 171 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 339 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id FA _struct_conn.ptnr2_label_atom_id O1A _struct_conn.ptnr2_label_comp_id ADP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id ADP _struct_conn.ptnr2_auth_seq_id 802 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.46 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # _atom_sites.entry_id 6UQE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 5 ADP A 1 801 998 ADP ADP . X 5 ADP A 1 802 999 ADP ADP . Y 6 AGS B 1 801 998 AGS AGS . Z 6 AGS B 1 802 999 AGS AGS . AA 6 AGS C 1 801 998 AGS AGS . BA 6 AGS C 1 802 999 AGS AGS . CA 6 AGS D 1 801 998 AGS AGS . DA 6 AGS D 1 802 999 AGS AGS . EA 5 ADP E 1 801 998 ADP ADP . FA 5 ADP E 1 802 998 ADP ADP . GA 6 AGS E 1 803 1 AGS AGS . HA 5 ADP F 1 801 999 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . Y 6 232.876 239.679 178.876 1 82.7 ? PG AGS 801 B 1 HETATM 2 S S1G AGS . . . Y 6 233.282 239.946 180.654 1 82.7 ? S1G AGS 801 B 1 HETATM 3 O O2G AGS . . . Y 6 232.229 241.119 178.553 1 82.7 ? O2G AGS 801 B 1 HETATM 4 O O3G AGS . . . Y 6 234.195 239.372 178.015 1 82.7 ? O3G AGS 801 B 1 HETATM 5 P PB AGS . . . Y 6 230.412 238.703 178.741 1 82.7 ? PB AGS 801 B 1 HETATM 6 O O1B AGS . . . Y 6 230.094 239.579 177.568 1 82.7 ? O1B AGS 801 B 1 HETATM 7 O O2B AGS . . . Y 6 229.833 239.382 179.908 1 82.7 ? O2B AGS 801 B 1 HETATM 8 O O3B AGS . . . Y 6 231.898 238.455 178.724 1 82.7 ? O3B AGS 801 B 1 HETATM 9 P PA AGS . . . Y 6 228.988 236.897 177.311 1 82.7 ? PA AGS 801 B 1 HETATM 10 O O1A AGS . . . Y 6 227.817 237.793 177.019 1 82.7 ? O1A AGS 801 B 1 HETATM 11 O O2A AGS . . . Y 6 230.021 237.123 176.307 1 82.7 ? O2A AGS 801 B 1 HETATM 12 O O3A AGS . . . Y 6 229.65 237.29 178.708 1 82.7 ? O3A AGS 801 B 1 HETATM 13 O O5' AGS . . . Y 6 228.693 235.356 177.207 1 82.7 ? O5' AGS 801 B 1 HETATM 14 C C5' AGS . . . Y 6 228.633 234.582 175.963 1 82.7 ? C5' AGS 801 B 1 HETATM 15 C C4' AGS . . . Y 6 227.963 233.111 176.21 1 82.7 ? C4' AGS 801 B 1 HETATM 16 O O4' AGS . . . Y 6 226.407 233.212 176.253 1 82.7 ? O4' AGS 801 B 1 HETATM 17 C C3' AGS . . . Y 6 228.249 232.562 177.445 1 82.7 ? C3' AGS 801 B 1 HETATM 18 O O3' AGS . . . Y 6 228.461 231.215 177.399 1 82.7 ? O3' AGS 801 B 1 HETATM 19 C C2' AGS . . . Y 6 226.967 232.969 178.403 1 82.7 ? C2' AGS 801 B 1 HETATM 20 O O2' AGS . . . Y 6 227.43 233.609 179.588 1 82.7 ? O2' AGS 801 B 1 HETATM 21 C C1' AGS . . . Y 6 226.231 233.832 177.657 1 82.7 ? C1' AGS 801 B 1 HETATM 22 N N9 AGS . . . Y 6 224.866 234.184 178.079 1 82.7 ? N9 AGS 801 B 1 HETATM 23 C C8 AGS . . . Y 6 224.586 234.89 179.17 1 82.7 ? C8 AGS 801 B 1 HETATM 24 N N7 AGS . . . Y 6 223.297 235.058 179.26 1 82.7 ? N7 AGS 801 B 1 HETATM 25 C C5 AGS . . . Y 6 222.713 234.475 178.209 1 82.7 ? C5 AGS 801 B 1 HETATM 26 C C6 AGS . . . Y 6 221.389 234.322 177.777 1 82.7 ? C6 AGS 801 B 1 HETATM 27 N N6 AGS . . . Y 6 220.405 234.904 178.557 1 82.7 ? N6 AGS 801 B 1 HETATM 28 N N1 AGS . . . Y 6 221.101 233.648 176.622 1 82.7 ? N1 AGS 801 B 1 HETATM 29 C C2 AGS . . . Y 6 222.112 233.091 175.892 1 82.7 ? C2 AGS 801 B 1 HETATM 30 N N3 AGS . . . Y 6 223.413 233.209 176.279 1 82.7 ? N3 AGS 801 B 1 HETATM 31 C C4 AGS . . . Y 6 223.734 233.897 177.44 1 82.7 ? C4 AGS 801 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 343 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #