data_6UQO
#
_model_server_result.job_id            FfW5qm4G5Bbf2QnmC8mYLA 
_model_server_result.datetime_utc      '2025-03-05 22:10:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uqo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":801}' 
#
_entry.id    6UQO 
#
_exptl.entry_id    6UQO 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
? 5 BA N N 
? 5 CA N N 
? 5 DA N N 
? 5 FA N N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 45 n n 
PG O2G AGS sing 46 n n 
PG O3G AGS sing 47 n n 
PG O3B AGS sing 48 n n 
PB O1B AGS doub 49 n n 
PB O2B AGS sing 50 n n 
PB O3B AGS sing 51 n n 
PB O3A AGS sing 52 n n 
PA O1A AGS doub 53 n n 
PA O2A AGS sing 54 n n 
PA O3A AGS sing 55 n n 
PA O5' AGS sing 56 n n 
O5' C5' AGS sing 57 n n 
C5' C4' AGS sing 58 n n 
C4' O4' AGS sing 59 n n 
C4' C3' AGS sing 60 n n 
O4' C1' AGS sing 61 n n 
C3' O3' AGS sing 62 n n 
C3' C2' AGS sing 63 n n 
C2' O2' AGS sing 64 n n 
C2' C1' AGS sing 65 n n 
C1' N9 AGS sing 66 n n 
N9 C8 AGS sing 67 n y 
N9 C4 AGS sing 68 n y 
C8 N7 AGS doub 69 n y 
N7 C5 AGS sing 70 n y 
C5 C6 AGS sing 71 n y 
C5 C4 AGS doub 72 n y 
C6 N6 AGS sing 73 n n 
C6 N1 AGS doub 74 n y 
N1 C2 AGS sing 75 n y 
C2 N3 AGS doub 76 n y 
N3 C4 AGS sing 77 n y 
O2G HOG2 AGS sing 78 n n 
O3G H21 AGS sing 79 n n 
O2B HOB2 AGS sing 80 n n 
O2A HOA2 AGS sing 81 n n 
C5' "H5'1" AGS sing 82 n n 
C5' "H5'2" AGS sing 83 n n 
C4' H4' AGS sing 84 n n 
C3' H3' AGS sing 85 n n 
O3' HO3' AGS sing 86 n n 
C2' H2' AGS sing 87 n n 
O2' HO2' AGS sing 88 n n 
C1' H1' AGS sing 89 n n 
C8 H8 AGS sing 90 n n 
N6 HN61 AGS sing 91 n n 
N6 HN62 AGS sing 92 n n 
C2 H2 AGS sing 93 n n 
#
_atom_sites.entry_id                     6UQO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 4 ADP A 1 801 998 ADP ADP . 
X 4 ADP A 1 802 999 ADP ADP . 
Y 5 AGS B 1 801 998 AGS AGS . 
Z 5 AGS B 1 802 999 AGS AGS . 
AA 5 AGS C 1 801 998 AGS AGS . 
BA 5 AGS C 1 802 999 AGS AGS . 
CA 5 AGS D 1 801 998 AGS AGS . 
DA 5 AGS D 1 802 999 AGS AGS . 
EA 4 ADP E 1 801 998 ADP ADP . 
FA 5 AGS E 1 802 999 AGS AGS . 
GA 4 ADP F 1 801 998 ADP ADP . 
HA 4 ADP F 1 802 999 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . AA 5 229.036 269.284 177.195 1 20 ? PG AGS 801 C 1 
HETATM 2 S S1G AGS . . . AA 5 230.613 268.803 178.031 1 20 ? S1G AGS 801 C 1 
HETATM 3 O O2G AGS . . . AA 5 229.197 269.364 175.593 1 20 ? O2G AGS 801 C 1 
HETATM 4 O O3G AGS . . . AA 5 227.936 268.225 177.626 1 20 ? O3G AGS 801 C 1 
HETATM 5 P PB AGS . . . AA 5 227.62 271.45 177.415 1 20 ? PB AGS 801 C 1 
HETATM 6 O O1B AGS . . . AA 5 228.078 272.14 176.17 1 20 ? O1B AGS 801 C 1 
HETATM 7 O O2B AGS . . . AA 5 227.423 272.491 178.412 1 20 ? O2B AGS 801 C 1 
HETATM 8 O O3B AGS . . . AA 5 228.772 270.623 177.949 1 20 ? O3B AGS 801 C 1 
HETATM 9 P PA AGS . . . AA 5 225.216 271.259 176.327 1 20 ? PA AGS 801 C 1 
HETATM 10 O O1A AGS . . . AA 5 224.874 272.697 176.575 1 20 ? O1A AGS 801 C 1 
HETATM 11 O O2A AGS . . . AA 5 225.818 271.096 174.969 1 20 ? O2A AGS 801 C 1 
HETATM 12 O O3A AGS . . . AA 5 226.251 270.672 177.38 1 20 ? O3A AGS 801 C 1 
HETATM 13 O O5' AGS . . . AA 5 223.985 270.272 176.262 1 20 ? O5' AGS 801 C 1 
HETATM 14 C C5' AGS . . . AA 5 222.926 270.093 177.203 1 20 ? C5' AGS 801 C 1 
HETATM 15 C C4' AGS . . . AA 5 221.88 271.252 176.899 1 20 ? C4' AGS 801 C 1 
HETATM 16 O O4' AGS . . . AA 5 222.181 272.462 177.834 1 20 ? O4' AGS 801 C 1 
HETATM 17 C C3' AGS . . . AA 5 220.565 270.982 177.127 1 20 ? C3' AGS 801 C 1 
HETATM 18 O O3' AGS . . . AA 5 219.958 270.372 176.084 1 20 ? O3' AGS 801 C 1 
HETATM 19 C C2' AGS . . . AA 5 219.986 272.493 177.316 1 20 ? C2' AGS 801 C 1 
HETATM 20 O O2' AGS . . . AA 5 218.627 272.495 177.665 1 20 ? O2' AGS 801 C 1 
HETATM 21 C C1' AGS . . . AA 5 220.786 272.938 178.314 1 20 ? C1' AGS 801 C 1 
HETATM 22 N N9 AGS . . . AA 5 220.775 274.384 178.667 1 20 ? N9 AGS 801 C 1 
HETATM 23 C C8 AGS . . . AA 5 221.717 274.945 179.411 1 20 ? C8 AGS 801 C 1 
HETATM 24 N N7 AGS . . . AA 5 221.463 276.224 179.565 1 20 ? N7 AGS 801 C 1 
HETATM 25 C C5 AGS . . . AA 5 220.342 276.516 178.904 1 20 ? C5 AGS 801 C 1 
HETATM 26 C C6 AGS . . . AA 5 219.59 277.694 178.714 1 20 ? C6 AGS 801 C 1 
HETATM 27 N N6 AGS . . . AA 5 220.031 278.856 179.314 1 20 ? N6 AGS 801 C 1 
HETATM 28 N N1 AGS . . . AA 5 218.464 277.689 177.948 1 20 ? N1 AGS 801 C 1 
HETATM 29 C C2 AGS . . . AA 5 218.04 276.537 177.365 1 20 ? C2 AGS 801 C 1 
HETATM 30 N N3 AGS . . . AA 5 218.731 275.361 177.542 1 20 ? N3 AGS 801 C 1 
HETATM 31 C C4 AGS . . . AA 5 219.906 275.341 178.288 1 20 ? C4 AGS 801 C 1 
#
_model_server_stats.io_time_ms              283 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#