data_6URM
#
_model_server_result.job_id            -aSQP7RYqUdJoxGYFcqeUQ 
_model_server_result.datetime_utc      '2024-10-19 21:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6urm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":301}' 
#
_entry.id    6URM 
#
_exptl.entry_id    6URM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          7 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.93 
_cell.angle_gamma         90 
_cell.entry_id            6URM 
_cell.length_a            42.408 
_cell.length_b            260.836 
_cell.length_c            66.453 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6URM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 L N N 
? 7 N N N 
? 7 O N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
4 oligosaccharide 
5 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 5 3 2 MAN NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
4 n G NAG 1 A 1 NAG H 501 NAG 
4 n G NAG 2 A 2 NAG H 502 NAG 
5 n H NAG 1 B 1 NAG D 501 NAG 
5 n H NAG 2 B 2 NAG D 502 NAG 
5 n H MAN 3 B 3 MAN D 503 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 55 F CYS 64 1_555 A SG CYS 67 F CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 90 F CYS 97 1_555 A SG CYS 136 F CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 149 H CYS 140 1_555 B SG CYS 205 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 C SG CYS 22 L CYS 23 1_555 C SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 134 L CYS 134 1_555 C SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 D SG CYS 55 C CYS 64 1_555 D SG CYS 67 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 D SG CYS 90 C CYS 97 1_555 D SG CYS 136 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf9 E SG CYS 22 D CYS 22 1_555 E SG CYS 97 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 E SG CYS 149 D CYS 140 1_555 E SG CYS 205 D CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 F SG CYS 22 E CYS 23 1_555 F SG CYS 87 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 F SG CYS 134 E CYS 134 1_555 F SG CYS 193 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 87 F ASN 94 1_555 I C1 NAG . F NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 B ND2 ASN 62 H ASN 60 1_555 G C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 E ND2 ASN 62 D ASN 60 1_555 H C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 G O4 NAG . A NAG 1 1_555 G C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 H O4 NAG . B NAG 1 1_555 H C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? 
covale ? covale6 H O4 NAG . B NAG 2 1_555 H C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 357 n n 
S O2 SO4 doub 358 n n 
S O3 SO4 sing 359 n n 
S O4 SO4 sing 360 n n 
#
_atom_sites.entry_id                     6URM 
_atom_sites.fract_transf_matrix[1][1]    0.02358 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002866 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003834 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015159 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 6 NAG F 1 601 694 NAG NAG . 
J 7 SO4 F 1 602 3 SO4 SO4 . 
K 8 GOL H 1 503 3 GOL GOL . 
L 7 SO4 L 1 301 2 SO4 SO4 . 
M 8 GOL D 1 504 1 GOL GOL . 
N 7 SO4 D 1 505 4 SO4 SO4 . 
O 7 SO4 E 1 301 1 SO4 SO4 . 
P 9 HOH F 1 701 39 HOH HOH . 
P 9 HOH F 2 702 67 HOH HOH . 
P 9 HOH F 3 703 46 HOH HOH . 
P 9 HOH F 4 704 70 HOH HOH . 
P 9 HOH F 5 705 98 HOH HOH . 
P 9 HOH F 6 706 99 HOH HOH . 
P 9 HOH F 7 707 23 HOH HOH . 
P 9 HOH F 8 708 51 HOH HOH . 
P 9 HOH F 9 709 97 HOH HOH . 
P 9 HOH F 10 710 52 HOH HOH . 
P 9 HOH F 11 711 56 HOH HOH . 
P 9 HOH F 12 712 35 HOH HOH . 
P 9 HOH F 13 713 89 HOH HOH . 
P 9 HOH F 14 714 45 HOH HOH . 
Q 9 HOH H 1 601 101 HOH HOH . 
Q 9 HOH H 2 602 18 HOH HOH . 
Q 9 HOH H 3 603 17 HOH HOH . 
Q 9 HOH H 4 604 7 HOH HOH . 
Q 9 HOH H 5 605 48 HOH HOH . 
Q 9 HOH H 6 606 93 HOH HOH . 
Q 9 HOH H 7 607 11 HOH HOH . 
Q 9 HOH H 8 608 59 HOH HOH . 
Q 9 HOH H 9 609 74 HOH HOH . 
Q 9 HOH H 10 610 71 HOH HOH . 
Q 9 HOH H 11 611 66 HOH HOH . 
Q 9 HOH H 12 612 100 HOH HOH . 
Q 9 HOH H 13 613 75 HOH HOH . 
Q 9 HOH H 14 614 73 HOH HOH . 
Q 9 HOH H 15 615 76 HOH HOH . 
R 9 HOH L 1 401 40 HOH HOH . 
R 9 HOH L 2 402 8 HOH HOH . 
R 9 HOH L 3 403 24 HOH HOH . 
R 9 HOH L 4 404 68 HOH HOH . 
R 9 HOH L 5 405 43 HOH HOH . 
R 9 HOH L 6 406 1 HOH HOH . 
R 9 HOH L 7 407 63 HOH HOH . 
R 9 HOH L 8 408 87 HOH HOH . 
R 9 HOH L 9 409 2 HOH HOH . 
R 9 HOH L 10 410 61 HOH HOH . 
R 9 HOH L 11 411 33 HOH HOH . 
R 9 HOH L 12 412 22 HOH HOH . 
R 9 HOH L 13 413 12 HOH HOH . 
R 9 HOH L 14 414 41 HOH HOH . 
R 9 HOH L 15 415 13 HOH HOH . 
R 9 HOH L 16 416 94 HOH HOH . 
R 9 HOH L 17 417 49 HOH HOH . 
R 9 HOH L 18 418 30 HOH HOH . 
S 9 HOH C 1 601 21 HOH HOH . 
S 9 HOH C 2 602 37 HOH HOH . 
S 9 HOH C 3 603 10 HOH HOH . 
S 9 HOH C 4 604 5 HOH HOH . 
S 9 HOH C 5 605 65 HOH HOH . 
S 9 HOH C 6 606 31 HOH HOH . 
S 9 HOH C 7 607 54 HOH HOH . 
S 9 HOH C 8 608 102 HOH HOH . 
T 9 HOH D 1 601 104 HOH HOH . 
T 9 HOH D 2 602 42 HOH HOH . 
T 9 HOH D 3 603 38 HOH HOH . 
T 9 HOH D 4 604 47 HOH HOH . 
T 9 HOH D 5 605 90 HOH HOH . 
T 9 HOH D 6 606 25 HOH HOH . 
T 9 HOH D 7 607 53 HOH HOH . 
T 9 HOH D 8 608 69 HOH HOH . 
T 9 HOH D 9 609 36 HOH HOH . 
T 9 HOH D 10 610 85 HOH HOH . 
T 9 HOH D 11 611 79 HOH HOH . 
T 9 HOH D 12 612 91 HOH HOH . 
T 9 HOH D 13 613 15 HOH HOH . 
T 9 HOH D 14 614 78 HOH HOH . 
T 9 HOH D 15 615 3 HOH HOH . 
T 9 HOH D 16 616 16 HOH HOH . 
T 9 HOH D 17 617 62 HOH HOH . 
T 9 HOH D 18 618 28 HOH HOH . 
T 9 HOH D 19 619 82 HOH HOH . 
T 9 HOH D 20 620 86 HOH HOH . 
T 9 HOH D 21 621 103 HOH HOH . 
T 9 HOH D 22 622 77 HOH HOH . 
T 9 HOH D 23 623 92 HOH HOH . 
T 9 HOH D 24 624 83 HOH HOH . 
T 9 HOH D 25 625 80 HOH HOH . 
T 9 HOH D 26 626 84 HOH HOH . 
T 9 HOH D 27 627 60 HOH HOH . 
U 9 HOH E 1 401 57 HOH HOH . 
U 9 HOH E 2 402 27 HOH HOH . 
U 9 HOH E 3 403 72 HOH HOH . 
U 9 HOH E 4 404 95 HOH HOH . 
U 9 HOH E 5 405 50 HOH HOH . 
U 9 HOH E 6 406 64 HOH HOH . 
U 9 HOH E 7 407 32 HOH HOH . 
U 9 HOH E 8 408 20 HOH HOH . 
U 9 HOH E 9 409 26 HOH HOH . 
U 9 HOH E 10 410 19 HOH HOH . 
U 9 HOH E 11 411 4 HOH HOH . 
U 9 HOH E 12 412 14 HOH HOH . 
U 9 HOH E 13 413 55 HOH HOH . 
U 9 HOH E 14 414 6 HOH HOH . 
U 9 HOH E 15 415 88 HOH HOH . 
U 9 HOH E 16 416 96 HOH HOH . 
U 9 HOH E 17 417 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . O 7 -18.386 75.006 30.428 1 93.07 ? S SO4 301 E 1 
HETATM 2 O O1 SO4 . . . O 7 -17.707 76.011 29.616 1 94.62 ? O1 SO4 301 E 1 
HETATM 3 O O2 SO4 . . . O 7 -19.803 74.975 30.075 1 92.65 ? O2 SO4 301 E 1 
HETATM 4 O O3 SO4 . . . O 7 -17.794 73.694 30.179 1 92.04 ? O3 SO4 301 E 1 
HETATM 5 O O4 SO4 . . . O 7 -18.241 75.351 31.84 1 93.25 ? O4 SO4 301 E 1 
#
_model_server_stats.io_time_ms              95 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           5 
#