data_6URT
#
_model_server_result.job_id            t02pZOXepwpRZ7JGIJ2zLQ 
_model_server_result.datetime_utc      '2024-10-19 16:28:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6urt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":401}' 
#
_entry.id    6URT 
#
_exptl.entry_id    6URT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              750.038 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            O-{(R)-hydroxy[(2R)-3-(icosyloxy)-2-(tetradecanoyloxy)propoxy]phosphoryl}-L-serine 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6URT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6URT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C40 H80 N O9 P' 
_chem_comp.formula_weight    750.038 
_chem_comp.id                QGD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              O-{(R)-hydroxy[(2R)-3-(icosyloxy)-2-(tetradecanoyloxy)propoxy]phosphoryl}-L-serine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C39 C38 QGD sing 275 n n 
C38 C37 QGD sing 276 n n 
C37 C36 QGD sing 277 n n 
C36 C35 QGD sing 278 n n 
C35 C34 QGD sing 279 n n 
C34 C33 QGD sing 280 n n 
C33 C32 QGD sing 281 n n 
C32 C31 QGD sing 282 n n 
C31 C30 QGD sing 283 n n 
C30 C29 QGD sing 284 n n 
C28 C29 QGD sing 285 n n 
C28 C27 QGD sing 286 n n 
N1 C6 QGD sing 287 n n 
C26 C27 QGD sing 288 n n 
C26 C25 QGD sing 289 n n 
C5 C6 QGD sing 290 n n 
C5 O4 QGD sing 291 n n 
C6 C1 QGD sing 292 n n 
O8 C1 QGD doub 293 n n 
O4 P1 QGD sing 294 n n 
C25 C24 QGD sing 295 n n 
O5 P1 QGD doub 296 n n 
C1 O9 QGD sing 297 n n 
P1 O6 QGD sing 298 n n 
P1 O3 QGD sing 299 n n 
C24 C23 QGD sing 300 n n 
C22 C23 QGD sing 301 n n 
C22 C21 QGD sing 302 n n 
O3 C4 QGD sing 303 n n 
C4 C2 QGD sing 304 n n 
C21 C20 QGD sing 305 n n 
O1 C20 QGD sing 306 n n 
O1 C3 QGD sing 307 n n 
C2 C3 QGD sing 308 n n 
C2 O2 QGD sing 309 n n 
O2 C7 QGD sing 310 n n 
C11 C10 QGD sing 311 n n 
C11 C12 QGD sing 312 n n 
C7 O7 QGD doub 313 n n 
C7 C8 QGD sing 314 n n 
C10 C9 QGD sing 315 n n 
C9 C8 QGD sing 316 n n 
C12 C13 QGD sing 317 n n 
C13 C14 QGD sing 318 n n 
C14 C15 QGD sing 319 n n 
C15 C16 QGD sing 320 n n 
C19 C18 QGD sing 321 n n 
C16 C17 QGD sing 322 n n 
C17 C18 QGD sing 323 n n 
C2 H1 QGD sing 324 n n 
C3 H2 QGD sing 325 n n 
C3 H3 QGD sing 326 n n 
C4 H4 QGD sing 327 n n 
C4 H5 QGD sing 328 n n 
C5 H6 QGD sing 329 n n 
C5 H7 QGD sing 330 n n 
C6 H8 QGD sing 331 n n 
O6 H9 QGD sing 332 n n 
C8 H10 QGD sing 333 n n 
C8 H11 QGD sing 334 n n 
C9 H12 QGD sing 335 n n 
C9 H13 QGD sing 336 n n 
C10 H14 QGD sing 337 n n 
C10 H15 QGD sing 338 n n 
O9 H16 QGD sing 339 n n 
C11 H17 QGD sing 340 n n 
C11 H18 QGD sing 341 n n 
C12 H19 QGD sing 342 n n 
C12 H20 QGD sing 343 n n 
C13 H21 QGD sing 344 n n 
C13 H22 QGD sing 345 n n 
C14 H23 QGD sing 346 n n 
C14 H24 QGD sing 347 n n 
C15 H25 QGD sing 348 n n 
C15 H26 QGD sing 349 n n 
C16 H27 QGD sing 350 n n 
C16 H28 QGD sing 351 n n 
C17 H29 QGD sing 352 n n 
C17 H30 QGD sing 353 n n 
C18 H31 QGD sing 354 n n 
C18 H32 QGD sing 355 n n 
C19 H33 QGD sing 356 n n 
C19 H34 QGD sing 357 n n 
C20 H36 QGD sing 358 n n 
C21 H37 QGD sing 359 n n 
C22 H38 QGD sing 360 n n 
C22 H39 QGD sing 361 n n 
C23 H40 QGD sing 362 n n 
C23 H41 QGD sing 363 n n 
C24 H42 QGD sing 364 n n 
C24 H43 QGD sing 365 n n 
C25 H44 QGD sing 366 n n 
C25 H45 QGD sing 367 n n 
C26 H46 QGD sing 368 n n 
C26 H47 QGD sing 369 n n 
C27 H48 QGD sing 370 n n 
C27 H49 QGD sing 371 n n 
C28 H50 QGD sing 372 n n 
C28 H51 QGD sing 373 n n 
C29 H52 QGD sing 374 n n 
C29 H53 QGD sing 375 n n 
C30 H54 QGD sing 376 n n 
C30 H55 QGD sing 377 n n 
C31 H56 QGD sing 378 n n 
C31 H57 QGD sing 379 n n 
C32 H58 QGD sing 380 n n 
C32 H59 QGD sing 381 n n 
C33 H60 QGD sing 382 n n 
C33 H61 QGD sing 383 n n 
C34 H62 QGD sing 384 n n 
C34 H63 QGD sing 385 n n 
C35 H64 QGD sing 386 n n 
C35 H65 QGD sing 387 n n 
C36 H66 QGD sing 388 n n 
C36 H67 QGD sing 389 n n 
C37 H68 QGD sing 390 n n 
C37 H69 QGD sing 391 n n 
C38 H70 QGD sing 392 n n 
C38 H71 QGD sing 393 n n 
C39 H72 QGD sing 394 n n 
C39 H73 QGD sing 395 n n 
C39 H74 QGD sing 396 n n 
N1 H75 QGD sing 397 n n 
N1 H76 QGD sing 398 n n 
C19 C40 QGD sing 399 n n 
C20 H35 QGD sing 400 n n 
C21 H78 QGD sing 401 n n 
C40 H77 QGD sing 402 n n 
C40 H79 QGD sing 403 n n 
C40 H80 QGD sing 404 n n 
#
_atom_sites.entry_id                     6URT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 QGD G 1 401 401 QGD LMG . 
I 2 QGD A 1 401 401 QGD LMG . 
J 2 QGD B 1 401 401 QGD LMG . 
K 2 QGD C 1 401 401 QGD LMG . 
L 2 QGD D 1 401 401 QGD LMG . 
M 2 QGD E 1 401 401 QGD LMG . 
N 2 QGD F 1 401 401 QGD LMG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 QGD . . . I 2 169.806 119.679 146.015 1 239.21 ? C1 QGD 401 A 1 
HETATM 2 O O1 QGD . . . I 2 174.456 122.313 149.454 1 239.21 ? O1 QGD 401 A 1 
HETATM 3 C C2 QGD . . . I 2 172.18 121.995 150.409 1 239.21 ? C2 QGD 401 A 1 
HETATM 4 O O2 QGD . . . I 2 171.349 122.509 151.461 1 239.21 ? O2 QGD 401 A 1 
HETATM 5 C C3 QGD . . . I 2 173.512 122.774 150.421 1 239.21 ? C3 QGD 401 A 1 
HETATM 6 O O3 QGD . . . I 2 172.129 121.768 147.946 1 239.21 ? O3 QGD 401 A 1 
HETATM 7 C C4 QGD . . . I 2 171.406 122.206 149.099 1 239.21 ? C4 QGD 401 A 1 
HETATM 8 O O4 QGD . . . I 2 170.937 122.354 145.785 1 239.21 ? O4 QGD 401 A 1 
HETATM 9 C C5 QGD . . . I 2 171.082 121.391 144.732 1 239.21 ? C5 QGD 401 A 1 
HETATM 10 O O5 QGD . . . I 2 173.428 122.465 145.913 1 239.21 ? O5 QGD 401 A 1 
HETATM 11 C C6 QGD . . . I 2 171.122 119.971 145.294 1 239.21 ? C6 QGD 401 A 1 
HETATM 12 O O6 QGD . . . I 2 171.986 124.137 147.192 1 239.21 ? O6 QGD 401 A 1 
HETATM 13 C C7 QGD . . . I 2 171.714 122.254 152.762 1 239.21 ? C7 QGD 401 A 1 
HETATM 14 C C8 QGD . . . I 2 170.904 123.013 153.817 1 239.21 ? C8 QGD 401 A 1 
HETATM 15 C C9 QGD . . . I 2 169.447 123.218 153.397 1 239.21 ? C9 QGD 401 A 1 
HETATM 16 O O7 QGD . . . I 2 172.527 121.402 153.126 1 239.21 ? O7 QGD 401 A 1 
HETATM 17 C C10 QGD . . . I 2 168.708 121.891 153.229 1 239.21 ? C10 QGD 401 A 1 
HETATM 18 O O9 QGD . . . I 2 169.706 120.064 147.2 1 239.21 ? O9 QGD 401 A 1 
HETATM 19 C C11 QGD . . . I 2 167.25 122.03 152.736 1 239.21 ? C11 QGD 401 A 1 
HETATM 20 C C12 QGD . . . I 2 166.021 122.673 153.46 1 239.21 ? C12 QGD 401 A 1 
HETATM 21 C C13 QGD . . . I 2 165.909 124.125 153.995 1 239.21 ? C13 QGD 401 A 1 
HETATM 22 C C14 QGD . . . I 2 166.715 124.535 155.238 1 239.21 ? C14 QGD 401 A 1 
HETATM 23 C C15 QGD . . . I 2 166.404 126.017 155.474 1 239.21 ? C15 QGD 401 A 1 
HETATM 24 C C16 QGD . . . I 2 166.916 126.821 156.709 1 239.21 ? C16 QGD 401 A 1 
HETATM 25 C C17 QGD . . . I 2 168.371 127.138 157.187 1 239.21 ? C17 QGD 401 A 1 
HETATM 26 C C18 QGD . . . I 2 169.41 126.091 157.666 1 239.21 ? C18 QGD 401 A 1 
HETATM 27 C C19 QGD . . . I 2 169.919 125.052 156.683 1 239.21 ? C19 QGD 401 A 1 
HETATM 28 C C20 QGD . . . I 2 175.005 121.184 149.979 1 239.21 ? C20 QGD 401 A 1 
HETATM 29 C C21 QGD . . . I 2 176.126 120.485 149.193 1 239.21 ? C21 QGD 401 A 1 
HETATM 30 C C22 QGD . . . I 2 176.571 121.083 147.852 1 239.21 ? C22 QGD 401 A 1 
HETATM 31 C C23 QGD . . . I 2 177.366 122.375 148.078 1 239.21 ? C23 QGD 401 A 1 
HETATM 32 C C24 QGD . . . I 2 177.837 122.945 146.741 1 239.21 ? C24 QGD 401 A 1 
HETATM 33 C C25 QGD . . . I 2 176.652 123.219 145.809 1 239.21 ? C25 QGD 401 A 1 
HETATM 34 C C26 QGD . . . I 2 177.191 123.807 144.504 1 239.21 ? C26 QGD 401 A 1 
HETATM 35 C C27 QGD . . . I 2 177.883 125.13 144.828 1 239.21 ? C27 QGD 401 A 1 
HETATM 36 O O8 QGD . . . I 2 168.924 119.081 145.362 1 239.21 ? O8 QGD 401 A 1 
HETATM 37 C C28 QGD . . . I 2 178.482 125.75 143.57 1 239.21 ? C28 QGD 401 A 1 
HETATM 38 C C29 QGD . . . I 2 179.117 127.079 143.973 1 239.21 ? C29 QGD 401 A 1 
HETATM 39 C C30 QGD . . . I 2 179.785 127.752 142.774 1 239.21 ? C30 QGD 401 A 1 
HETATM 40 C C31 QGD . . . I 2 180.897 126.844 142.254 1 239.21 ? C31 QGD 401 A 1 
HETATM 41 C C32 QGD . . . I 2 181.595 127.51 141.071 1 239.21 ? C32 QGD 401 A 1 
HETATM 42 C C33 QGD . . . I 2 182.719 126.595 140.587 1 239.21 ? C33 QGD 401 A 1 
HETATM 43 C C34 QGD . . . I 2 183.437 127.25 139.408 1 239.21 ? C34 QGD 401 A 1 
HETATM 44 C C35 QGD . . . I 2 184.568 126.341 138.923 1 239.21 ? C35 QGD 401 A 1 
HETATM 45 C C36 QGD . . . I 2 183.994 124.995 138.475 1 239.21 ? C36 QGD 401 A 1 
HETATM 46 C C37 QGD . . . I 2 185.133 124.096 137.994 1 239.21 ? C37 QGD 401 A 1 
HETATM 47 C C38 QGD . . . I 2 184.568 122.748 137.546 1 239.21 ? C38 QGD 401 A 1 
HETATM 48 C C39 QGD . . . I 2 185.714 121.857 137.067 1 239.21 ? C39 QGD 401 A 1 
HETATM 49 N N1 QGD . . . I 2 171.288 118.992 144.211 1 239.21 ? N1 QGD 401 A 1 
HETATM 50 P P1 QGD . . . I 2 172.21 122.765 146.692 1 239.21 ? P1 QGD 401 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           50 
#