data_6URW # _model_server_result.job_id NlDFwWRfHx1eLA0fcuUcjA _model_server_result.datetime_utc '2024-10-19 14:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6urw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":314}' # _entry.id 6URW # _exptl.entry_id 6URW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6URW _cell.length_a 168.615 _cell.length_b 168.615 _cell.length_c 54.657 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6URW _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 6URW _atom_sites.fract_transf_matrix[1][1] 0.005931 _atom_sites.fract_transf_matrix[1][2] 0.003424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 2 EDO EDO . D 2 EDO A 1 303 3 EDO EDO . E 2 EDO A 1 304 4 EDO EDO . F 2 EDO A 1 305 5 EDO EDO . G 2 EDO A 1 306 6 EDO EDO . H 2 EDO A 1 307 7 EDO EDO . I 2 EDO A 1 308 8 EDO EDO . J 2 EDO A 1 309 9 EDO EDO . K 2 EDO A 1 310 10 EDO EDO . L 2 EDO A 1 311 11 EDO EDO . M 2 EDO A 1 312 12 EDO EDO . N 2 EDO A 1 313 13 EDO EDO . O 2 EDO A 1 314 14 EDO EDO . P 2 EDO A 1 315 15 EDO EDO . Q 2 EDO A 1 316 16 EDO EDO . R 2 EDO A 1 317 17 EDO EDO . S 2 EDO A 1 318 18 EDO EDO . T 2 EDO A 1 319 19 EDO EDO . U 2 EDO A 1 320 20 EDO EDO . V 2 EDO A 1 321 21 EDO EDO . W 2 EDO A 1 322 22 EDO EDO . X 3 DMS A 1 323 1 DMS DMS . Y 4 R7T A 1 324 1 R7T R7T . Z 5 HOH A 1 401 98 HOH HOH . Z 5 HOH A 2 402 122 HOH HOH . Z 5 HOH A 3 403 24 HOH HOH . Z 5 HOH A 4 404 102 HOH HOH . Z 5 HOH A 5 405 114 HOH HOH . Z 5 HOH A 6 406 10 HOH HOH . Z 5 HOH A 7 407 121 HOH HOH . Z 5 HOH A 8 408 8 HOH HOH . Z 5 HOH A 9 409 118 HOH HOH . Z 5 HOH A 10 410 92 HOH HOH . Z 5 HOH A 11 411 132 HOH HOH . Z 5 HOH A 12 412 97 HOH HOH . Z 5 HOH A 13 413 53 HOH HOH . Z 5 HOH A 14 414 15 HOH HOH . Z 5 HOH A 15 415 22 HOH HOH . Z 5 HOH A 16 416 108 HOH HOH . Z 5 HOH A 17 417 129 HOH HOH . Z 5 HOH A 18 418 145 HOH HOH . Z 5 HOH A 19 419 23 HOH HOH . Z 5 HOH A 20 420 40 HOH HOH . Z 5 HOH A 21 421 127 HOH HOH . Z 5 HOH A 22 422 34 HOH HOH . Z 5 HOH A 23 424 153 HOH HOH . Z 5 HOH A 24 425 111 HOH HOH . Z 5 HOH A 25 426 124 HOH HOH . Z 5 HOH A 26 427 123 HOH HOH . Z 5 HOH A 27 428 93 HOH HOH . Z 5 HOH A 28 429 50 HOH HOH . Z 5 HOH A 29 430 105 HOH HOH . Z 5 HOH A 30 431 134 HOH HOH . Z 5 HOH A 31 432 104 HOH HOH . Z 5 HOH A 32 433 106 HOH HOH . Z 5 HOH A 33 434 4 HOH HOH . Z 5 HOH A 34 435 6 HOH HOH . Z 5 HOH A 35 436 157 HOH HOH . Z 5 HOH A 36 437 137 HOH HOH . Z 5 HOH A 37 438 130 HOH HOH . Z 5 HOH A 38 439 142 HOH HOH . Z 5 HOH A 39 440 28 HOH HOH . Z 5 HOH A 40 441 115 HOH HOH . Z 5 HOH A 41 442 2 HOH HOH . Z 5 HOH A 42 443 135 HOH HOH . Z 5 HOH A 43 444 100 HOH HOH . Z 5 HOH A 44 445 31 HOH HOH . Z 5 HOH A 45 446 80 HOH HOH . Z 5 HOH A 46 447 84 HOH HOH . Z 5 HOH A 47 448 17 HOH HOH . Z 5 HOH A 48 449 126 HOH HOH . Z 5 HOH A 49 450 75 HOH HOH . Z 5 HOH A 50 451 56 HOH HOH . Z 5 HOH A 51 452 35 HOH HOH . Z 5 HOH A 52 453 51 HOH HOH . Z 5 HOH A 53 454 101 HOH HOH . Z 5 HOH A 54 455 52 HOH HOH . Z 5 HOH A 55 456 149 HOH HOH . Z 5 HOH A 56 457 148 HOH HOH . Z 5 HOH A 57 458 77 HOH HOH . Z 5 HOH A 58 459 49 HOH HOH . Z 5 HOH A 59 460 60 HOH HOH . Z 5 HOH A 60 461 141 HOH HOH . Z 5 HOH A 61 462 125 HOH HOH . Z 5 HOH A 62 463 140 HOH HOH . Z 5 HOH A 63 464 119 HOH HOH . Z 5 HOH A 64 465 116 HOH HOH . Z 5 HOH A 65 466 3 HOH HOH . Z 5 HOH A 66 467 120 HOH HOH . Z 5 HOH A 67 468 138 HOH HOH . Z 5 HOH A 68 469 109 HOH HOH . Z 5 HOH A 69 470 21 HOH HOH . Z 5 HOH A 70 471 20 HOH HOH . Z 5 HOH A 71 472 45 HOH HOH . Z 5 HOH A 72 473 27 HOH HOH . Z 5 HOH A 73 474 113 HOH HOH . Z 5 HOH A 74 475 63 HOH HOH . Z 5 HOH A 75 476 143 HOH HOH . Z 5 HOH A 76 477 110 HOH HOH . Z 5 HOH A 77 478 29 HOH HOH . Z 5 HOH A 78 479 12 HOH HOH . Z 5 HOH A 79 480 133 HOH HOH . Z 5 HOH A 80 481 13 HOH HOH . Z 5 HOH A 81 482 155 HOH HOH . Z 5 HOH A 82 483 48 HOH HOH . Z 5 HOH A 83 484 16 HOH HOH . Z 5 HOH A 84 485 112 HOH HOH . Z 5 HOH A 85 486 131 HOH HOH . Z 5 HOH A 86 487 144 HOH HOH . Z 5 HOH A 87 488 103 HOH HOH . Z 5 HOH A 88 489 96 HOH HOH . Z 5 HOH A 89 490 139 HOH HOH . Z 5 HOH A 90 491 156 HOH HOH . Z 5 HOH A 91 492 128 HOH HOH . Z 5 HOH A 92 493 150 HOH HOH . Z 5 HOH A 93 494 151 HOH HOH . Z 5 HOH A 94 495 30 HOH HOH . Z 5 HOH A 95 496 152 HOH HOH . Z 5 HOH A 96 497 136 HOH HOH . Z 5 HOH A 97 498 146 HOH HOH . Z 5 HOH A 98 499 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 2 26.405 74.77 -8.081 1 54.08 ? C1 EDO 314 A 1 HETATM 2 O O1 EDO . . . O 2 25.389 75.422 -8.849 1 48.8 ? O1 EDO 314 A 1 HETATM 3 C C2 EDO . . . O 2 27.685 74.635 -8.891 1 55.74 ? C2 EDO 314 A 1 HETATM 4 O O2 EDO . . . O 2 28.066 75.949 -9.321 1 62.78 ? O2 EDO 314 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #