data_6URX # _model_server_result.job_id hQzleD-Mj4SvMdVhCKt_0g _model_server_result.datetime_utc '2024-10-20 07:35:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6urx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":317}' # _entry.id 6URX # _exptl.entry_id 6URX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6URX _cell.length_a 168.355 _cell.length_b 168.355 _cell.length_c 54.834 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6URX _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 260 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 259 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 260 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 259 _struct_conn.ptnr2_symmetry 11_554 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.762 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6URX _atom_sites.fract_transf_matrix[1][1] 0.00594 _atom_sites.fract_transf_matrix[1][2] 0.003429 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 2 EDO A 1 303 5 EDO EDO . E 2 EDO A 1 304 7 EDO EDO . F 2 EDO A 1 305 8 EDO EDO . G 2 EDO A 1 306 9 EDO EDO . H 2 EDO A 1 307 11 EDO EDO . I 2 EDO A 1 308 12 EDO EDO . J 2 EDO A 1 309 13 EDO EDO . K 2 EDO A 1 310 14 EDO EDO . L 2 EDO A 1 311 15 EDO EDO . M 2 EDO A 1 312 16 EDO EDO . N 2 EDO A 1 313 17 EDO EDO . O 2 EDO A 1 314 18 EDO EDO . P 2 EDO A 1 315 19 EDO EDO . Q 3 JMG A 1 316 1 JMG RT9 . R 4 DMS A 1 317 1 DMS DMS . S 5 HOH A 1 401 278 HOH HOH . S 5 HOH A 2 402 257 HOH HOH . S 5 HOH A 3 403 64 HOH HOH . S 5 HOH A 4 404 303 HOH HOH . S 5 HOH A 5 405 272 HOH HOH . S 5 HOH A 6 406 295 HOH HOH . S 5 HOH A 7 407 35 HOH HOH . S 5 HOH A 8 408 250 HOH HOH . S 5 HOH A 9 409 245 HOH HOH . S 5 HOH A 10 410 277 HOH HOH . S 5 HOH A 11 411 252 HOH HOH . S 5 HOH A 12 412 105 HOH HOH . S 5 HOH A 13 413 18 HOH HOH . S 5 HOH A 14 414 251 HOH HOH . S 5 HOH A 15 415 24 HOH HOH . S 5 HOH A 16 416 91 HOH HOH . S 5 HOH A 17 417 47 HOH HOH . S 5 HOH A 18 418 116 HOH HOH . S 5 HOH A 19 419 286 HOH HOH . S 5 HOH A 20 420 235 HOH HOH . S 5 HOH A 21 421 10 HOH HOH . S 5 HOH A 22 422 67 HOH HOH . S 5 HOH A 23 423 244 HOH HOH . S 5 HOH A 24 424 302 HOH HOH . S 5 HOH A 25 425 87 HOH HOH . S 5 HOH A 26 426 134 HOH HOH . S 5 HOH A 27 427 243 HOH HOH . S 5 HOH A 28 428 23 HOH HOH . S 5 HOH A 29 429 22 HOH HOH . S 5 HOH A 30 430 84 HOH HOH . S 5 HOH A 31 431 291 HOH HOH . S 5 HOH A 32 432 56 HOH HOH . S 5 HOH A 33 433 62 HOH HOH . S 5 HOH A 34 434 29 HOH HOH . S 5 HOH A 35 435 284 HOH HOH . S 5 HOH A 36 436 122 HOH HOH . S 5 HOH A 37 437 86 HOH HOH . S 5 HOH A 38 438 3 HOH HOH . S 5 HOH A 39 439 256 HOH HOH . S 5 HOH A 40 440 262 HOH HOH . S 5 HOH A 41 441 80 HOH HOH . S 5 HOH A 42 442 249 HOH HOH . S 5 HOH A 43 443 39 HOH HOH . S 5 HOH A 44 444 42 HOH HOH . S 5 HOH A 45 445 231 HOH HOH . S 5 HOH A 46 446 73 HOH HOH . S 5 HOH A 47 447 237 HOH HOH . S 5 HOH A 48 448 233 HOH HOH . S 5 HOH A 49 449 13 HOH HOH . S 5 HOH A 50 450 104 HOH HOH . S 5 HOH A 51 451 255 HOH HOH . S 5 HOH A 52 452 246 HOH HOH . S 5 HOH A 53 453 125 HOH HOH . S 5 HOH A 54 454 65 HOH HOH . S 5 HOH A 55 455 258 HOH HOH . S 5 HOH A 56 456 27 HOH HOH . S 5 HOH A 57 457 124 HOH HOH . S 5 HOH A 58 458 110 HOH HOH . S 5 HOH A 59 459 121 HOH HOH . S 5 HOH A 60 460 83 HOH HOH . S 5 HOH A 61 461 72 HOH HOH . S 5 HOH A 62 462 239 HOH HOH . S 5 HOH A 63 463 69 HOH HOH . S 5 HOH A 64 464 268 HOH HOH . S 5 HOH A 65 465 1 HOH HOH . S 5 HOH A 66 466 60 HOH HOH . S 5 HOH A 67 467 46 HOH HOH . S 5 HOH A 68 468 54 HOH HOH . S 5 HOH A 69 469 173 HOH HOH . S 5 HOH A 70 470 234 HOH HOH . S 5 HOH A 71 471 261 HOH HOH . S 5 HOH A 72 472 25 HOH HOH . S 5 HOH A 73 473 55 HOH HOH . S 5 HOH A 74 474 41 HOH HOH . S 5 HOH A 75 475 305 HOH HOH . S 5 HOH A 76 476 71 HOH HOH . S 5 HOH A 77 477 48 HOH HOH . S 5 HOH A 78 478 63 HOH HOH . S 5 HOH A 79 479 11 HOH HOH . S 5 HOH A 80 480 15 HOH HOH . S 5 HOH A 81 481 236 HOH HOH . S 5 HOH A 82 482 57 HOH HOH . S 5 HOH A 83 483 32 HOH HOH . S 5 HOH A 84 484 2 HOH HOH . S 5 HOH A 85 485 154 HOH HOH . S 5 HOH A 86 486 304 HOH HOH . S 5 HOH A 87 488 31 HOH HOH . S 5 HOH A 88 489 44 HOH HOH . S 5 HOH A 89 490 293 HOH HOH . S 5 HOH A 90 491 253 HOH HOH . S 5 HOH A 91 492 61 HOH HOH . S 5 HOH A 92 493 282 HOH HOH . S 5 HOH A 93 494 7 HOH HOH . S 5 HOH A 94 495 58 HOH HOH . S 5 HOH A 95 496 274 HOH HOH . S 5 HOH A 96 497 19 HOH HOH . S 5 HOH A 97 498 242 HOH HOH . S 5 HOH A 98 499 108 HOH HOH . S 5 HOH A 99 500 180 HOH HOH . S 5 HOH A 100 501 49 HOH HOH . S 5 HOH A 101 502 297 HOH HOH . S 5 HOH A 102 503 50 HOH HOH . S 5 HOH A 103 504 265 HOH HOH . S 5 HOH A 104 505 98 HOH HOH . S 5 HOH A 105 506 34 HOH HOH . S 5 HOH A 106 507 38 HOH HOH . S 5 HOH A 107 508 266 HOH HOH . S 5 HOH A 108 509 232 HOH HOH . S 5 HOH A 109 510 76 HOH HOH . S 5 HOH A 110 511 269 HOH HOH . S 5 HOH A 111 512 89 HOH HOH . S 5 HOH A 112 513 21 HOH HOH . S 5 HOH A 113 514 141 HOH HOH . S 5 HOH A 114 515 157 HOH HOH . S 5 HOH A 115 516 26 HOH HOH . S 5 HOH A 116 517 117 HOH HOH . S 5 HOH A 117 518 100 HOH HOH . S 5 HOH A 118 519 273 HOH HOH . S 5 HOH A 119 520 4 HOH HOH . S 5 HOH A 120 521 12 HOH HOH . S 5 HOH A 121 522 281 HOH HOH . S 5 HOH A 122 523 33 HOH HOH . S 5 HOH A 123 524 45 HOH HOH . S 5 HOH A 124 525 85 HOH HOH . S 5 HOH A 125 526 77 HOH HOH . S 5 HOH A 126 527 5 HOH HOH . S 5 HOH A 127 528 9 HOH HOH . S 5 HOH A 128 529 103 HOH HOH . S 5 HOH A 129 530 283 HOH HOH . S 5 HOH A 130 531 179 HOH HOH . S 5 HOH A 131 532 107 HOH HOH . S 5 HOH A 132 533 131 HOH HOH . S 5 HOH A 133 534 126 HOH HOH . S 5 HOH A 134 535 259 HOH HOH . S 5 HOH A 135 536 68 HOH HOH . S 5 HOH A 136 537 276 HOH HOH . S 5 HOH A 137 538 161 HOH HOH . S 5 HOH A 138 539 287 HOH HOH . S 5 HOH A 139 540 263 HOH HOH . S 5 HOH A 140 541 248 HOH HOH . S 5 HOH A 141 542 88 HOH HOH . S 5 HOH A 142 543 171 HOH HOH . S 5 HOH A 143 544 120 HOH HOH . S 5 HOH A 144 545 36 HOH HOH . S 5 HOH A 145 546 30 HOH HOH . S 5 HOH A 146 547 51 HOH HOH . S 5 HOH A 147 548 289 HOH HOH . S 5 HOH A 148 549 17 HOH HOH . S 5 HOH A 149 550 6 HOH HOH . S 5 HOH A 150 551 52 HOH HOH . S 5 HOH A 151 552 288 HOH HOH . S 5 HOH A 152 553 8 HOH HOH . S 5 HOH A 153 554 215 HOH HOH . S 5 HOH A 154 555 37 HOH HOH . S 5 HOH A 155 556 214 HOH HOH . S 5 HOH A 156 557 301 HOH HOH . S 5 HOH A 157 558 211 HOH HOH . S 5 HOH A 158 559 79 HOH HOH . S 5 HOH A 159 560 28 HOH HOH . S 5 HOH A 160 561 92 HOH HOH . S 5 HOH A 161 562 160 HOH HOH . S 5 HOH A 162 563 209 HOH HOH . S 5 HOH A 163 564 78 HOH HOH . S 5 HOH A 164 565 275 HOH HOH . S 5 HOH A 165 566 238 HOH HOH . S 5 HOH A 166 567 270 HOH HOH . S 5 HOH A 167 568 271 HOH HOH . S 5 HOH A 168 569 279 HOH HOH . S 5 HOH A 169 570 113 HOH HOH . S 5 HOH A 170 571 40 HOH HOH . S 5 HOH A 171 572 290 HOH HOH . S 5 HOH A 172 573 205 HOH HOH . S 5 HOH A 173 574 299 HOH HOH . S 5 HOH A 174 575 150 HOH HOH . S 5 HOH A 175 576 296 HOH HOH . S 5 HOH A 176 577 114 HOH HOH . S 5 HOH A 177 578 241 HOH HOH . S 5 HOH A 178 579 106 HOH HOH . S 5 HOH A 179 580 264 HOH HOH . S 5 HOH A 180 581 292 HOH HOH . S 5 HOH A 181 582 81 HOH HOH . S 5 HOH A 182 583 93 HOH HOH . S 5 HOH A 183 584 294 HOH HOH . S 5 HOH A 184 585 267 HOH HOH . S 5 HOH A 185 586 109 HOH HOH . S 5 HOH A 186 587 217 HOH HOH . S 5 HOH A 187 588 213 HOH HOH . S 5 HOH A 188 589 300 HOH HOH . S 5 HOH A 189 590 219 HOH HOH . S 5 HOH A 190 591 230 HOH HOH . S 5 HOH A 191 592 212 HOH HOH . S 5 HOH A 192 593 196 HOH HOH . S 5 HOH A 193 594 285 HOH HOH . S 5 HOH A 194 595 280 HOH HOH . S 5 HOH A 195 596 159 HOH HOH . S 5 HOH A 196 597 95 HOH HOH . S 5 HOH A 197 598 298 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . R 4 27.882 49.83 -6.047 1 68.77 ? S DMS 317 A 1 HETATM 2 O O DMS . . . R 4 28.666 49.437 -4.851 1 55.9 ? O DMS 317 A 1 HETATM 3 C C1 DMS . . . R 4 26.52 48.808 -6.21 1 68.27 ? C1 DMS 317 A 1 HETATM 4 C C2 DMS . . . R 4 27.028 51.281 -5.805 1 66.52 ? C2 DMS 317 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 570 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #