data_6USO # _model_server_result.job_id -6FOVMB4KiKX5ch-X8sVAw _model_server_result.datetime_utc '2024-11-26 10:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 6USO # _exptl.entry_id 6USO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6USO _cell.length_a 101.188 _cell.length_b 101.188 _cell.length_c 169.321 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6USO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 252 A ASP 251 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 C OP2 C 5 F C 5 1_555 E MG MG . F MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 C OP2 C 6 F C 6 1_555 G MG MG . F MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc4 C O5' C 6 F C 6 1_555 G MG MG . F MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc5 C OP2 U 7 F U 7 1_555 G MG MG . F MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc6 E MG MG . F MG 101 1_555 K O HOH . F HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 E DG 1 1_555 C N3 DC 16 F DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 E DG 1 1_555 C O2 DC 16 F DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 E DG 1 1_555 C N4 DC 16 F DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 E DG 2 1_555 C N3 C 15 F C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 E DG 2 1_555 C O2 C 15 F C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 E DG 2 1_555 C N4 C 15 F C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DT 3 E DT 3 1_555 C N1 A 14 F A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O4 DT 3 E DT 3 1_555 C N6 A 14 F A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DC 4 E DC 4 1_555 C N1 G 13 F G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 DC 4 E DC 4 1_555 C O6 G 13 F G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 DC 4 E DC 4 1_555 C N2 G 13 F G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 E DA 5 1_555 C N3 DT 12 F DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 E DA 5 1_555 C O4 DT 12 F DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 6 E DG 6 1_555 C N3 DC 11 F DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N2 DG 6 E DG 6 1_555 C O2 DC 11 F DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O6 DG 6 E DG 6 1_555 C N4 DC 11 F DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-C PAIR' hydrog17 B N2 DG 7 E DG 7 1_555 C O2 C 10 F C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DT 8 E DT 8 1_555 C N1 A 9 F A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O4 DT 8 E DT 8 1_555 C N6 A 9 F A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 DC 9 E DC 9 1_555 C N1 G 8 F G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N4 DC 9 E DC 9 1_555 C O6 G 8 F G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O2 DC 9 E DC 9 1_555 C N2 G 8 F G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DA 10 E DA 10 1_555 C N3 U 7 F U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N6 DA 10 E DA 10 1_555 C O4 U 7 F U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 DG 11 E DG 11 1_555 C N3 C 6 F C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N2 DG 11 E DG 11 1_555 C O2 C 6 F C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O6 DG 11 E DG 11 1_555 C N4 C 6 F C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N1 DG 12 E DG 12 1_555 C N3 C 5 F C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N2 DG 12 E DG 12 1_555 C O2 C 5 F C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O6 DG 12 E DG 12 1_555 C N4 C 5 F C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N3 DT 13 E DT 13 1_555 C N1 A 4 F A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O4 DT 13 E DT 13 1_555 C N6 A 4 F A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N3 DC 14 E DC 14 1_555 C N1 G 3 F G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N4 DC 14 E DC 14 1_555 C O6 G 3 F G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B O2 DC 14 E DC 14 1_555 C N2 G 3 F G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B N1 DA 15 E DA 15 1_555 C N3 U 2 F U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B N6 DA 15 E DA 15 1_555 C O4 U 2 F U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6USO _atom_sites.fract_transf_matrix[1][1] 0.009883 _atom_sites.fract_transf_matrix[1][2] 0.005706 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 601 597 MG MG . E 4 MG F 1 101 598 MG MG . F 4 MG F 1 102 599 MG MG . G 4 MG F 1 103 600 MG MG . H 4 MG F 1 104 601 MG MG . I 5 HOH A 1 701 34 HOH HOH . I 5 HOH A 2 702 35 HOH HOH . I 5 HOH A 3 703 26 HOH HOH . I 5 HOH A 4 704 6 HOH HOH . I 5 HOH A 5 705 2 HOH HOH . I 5 HOH A 6 706 52 HOH HOH . I 5 HOH A 7 707 24 HOH HOH . I 5 HOH A 8 708 8 HOH HOH . I 5 HOH A 9 709 38 HOH HOH . I 5 HOH A 10 710 4 HOH HOH . I 5 HOH A 11 711 18 HOH HOH . I 5 HOH A 12 712 15 HOH HOH . I 5 HOH A 13 713 49 HOH HOH . I 5 HOH A 14 714 29 HOH HOH . I 5 HOH A 15 715 31 HOH HOH . I 5 HOH A 16 716 7 HOH HOH . I 5 HOH A 17 717 48 HOH HOH . I 5 HOH A 18 718 46 HOH HOH . I 5 HOH A 19 719 17 HOH HOH . I 5 HOH A 20 720 33 HOH HOH . I 5 HOH A 21 721 32 HOH HOH . I 5 HOH A 22 722 45 HOH HOH . I 5 HOH A 23 723 36 HOH HOH . I 5 HOH A 24 724 19 HOH HOH . I 5 HOH A 25 725 44 HOH HOH . I 5 HOH A 26 726 41 HOH HOH . I 5 HOH A 27 727 5 HOH HOH . I 5 HOH A 28 728 30 HOH HOH . I 5 HOH A 29 729 47 HOH HOH . I 5 HOH A 30 730 37 HOH HOH . I 5 HOH A 31 731 42 HOH HOH . I 5 HOH A 32 732 40 HOH HOH . I 5 HOH A 33 733 39 HOH HOH . J 5 HOH E 1 101 21 HOH HOH . J 5 HOH E 2 102 10 HOH HOH . J 5 HOH E 3 103 20 HOH HOH . J 5 HOH E 4 104 12 HOH HOH . J 5 HOH E 5 105 11 HOH HOH . J 5 HOH E 6 106 50 HOH HOH . K 5 HOH F 1 201 14 HOH HOH . K 5 HOH F 2 202 23 HOH HOH . K 5 HOH F 3 203 43 HOH HOH . K 5 HOH F 4 204 16 HOH HOH . K 5 HOH F 5 205 13 HOH HOH . K 5 HOH F 6 206 28 HOH HOH . K 5 HOH F 7 207 27 HOH HOH . K 5 HOH F 8 208 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -19.315 _atom_site.Cartn_y 30.09 _atom_site.Cartn_z 1.621 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 81.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #