data_6USX # _model_server_result.job_id JlzZjGl58CUivzqDMCRO-A _model_server_result.datetime_utc '2024-11-17 22:27:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6usx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 6USX # _exptl.entry_id 6USX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.662 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{4-[2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl}propan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6USX _cell.length_a 88.57 _cell.length_b 156.49 _cell.length_c 62.98 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6USX _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 E C32 M1R . A M1R 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? covale ? covale2 B SG CYS 13 B CYS 12 1_555 H C32 M1R . B M1R 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 C O2B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 D MG MG . A MG 202 1_555 I O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 D MG MG . A MG 202 1_555 I O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc5 D MG MG . A MG 202 1_555 I O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc6 D MG MG . A MG 202 1_555 I O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc8 F O2B GDP . B GDP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc9 G MG MG . B MG 202 1_555 J O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc10 G MG MG . B MG 202 1_555 J O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? # _chem_comp.formula 'C30 H38 N6 O2' _chem_comp.formula_weight 514.662 _chem_comp.id M1R _chem_comp.mon_nstd_flag . _chem_comp.name 1-{4-[2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl}propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C25 M1R doub 263 n y C24 C22 M1R sing 264 n y C25 C26 M1R sing 265 n y C21 C22 M1R doub 266 n y C21 C20 M1R sing 267 n y C22 C23 M1R sing 268 n y C26 C27 M1R doub 269 n y C20 C19 M1R doub 270 n y C23 C27 M1R sing 271 n y C23 C18 M1R doub 272 n y C19 C18 M1R sing 273 n y C18 N9 M1R sing 274 n n C36 C35 M1R sing 275 n n C36 C37 M1R sing 276 n n C10 N9 M1R sing 277 n n C10 C2 M1R sing 278 n n N9 C8 M1R sing 279 n n C35 N34 M1R sing 280 n n C37 C33 M1R sing 281 n n N3 C2 M1R doub 282 n y N3 C4 M1R sing 283 n y C2 C1 M1R sing 284 n y C8 C7 M1R sing 285 n n N34 C33 M1R sing 286 n n N34 C38 M1R sing 287 n n O11 C4 M1R sing 288 n n O11 C28 M1R sing 289 n n C4 N5 M1R doub 290 n y C33 C28 M1R sing 291 n n C1 C7 M1R sing 292 n n C1 C6 M1R doub 293 n y N5 C6 M1R sing 294 n y C6 N12 M1R sing 295 n n N12 C13 M1R sing 296 n n N12 C17 M1R sing 297 n n C13 C14 M1R sing 298 n n C17 C16 M1R sing 299 n n C14 N15 M1R sing 300 n n C16 N15 M1R sing 301 n n N15 C29 M1R sing 302 n n O31 C29 M1R doub 303 n n C29 C30 M1R sing 304 n n C30 C32 M1R sing 305 n n C14 H1 M1R sing 306 n n C14 H2 M1R sing 307 n n C13 H3 M1R sing 308 n n C13 H4 M1R sing 309 n n C17 H5 M1R sing 310 n n C17 H6 M1R sing 311 n n C16 H7 M1R sing 312 n n C16 H8 M1R sing 313 n n C10 H9 M1R sing 314 n n C10 H10 M1R sing 315 n n C8 H11 M1R sing 316 n n C8 H12 M1R sing 317 n n C7 H13 M1R sing 318 n n C7 H14 M1R sing 319 n n C19 H15 M1R sing 320 n n C20 H16 M1R sing 321 n n C21 H17 M1R sing 322 n n C24 H18 M1R sing 323 n n C25 H19 M1R sing 324 n n C26 H20 M1R sing 325 n n C27 H21 M1R sing 326 n n C28 H22 M1R sing 327 n n C28 H23 M1R sing 328 n n C30 H24 M1R sing 329 n n C30 H25 M1R sing 330 n n C32 H26 M1R sing 331 n n C32 H27 M1R sing 332 n n C32 H28 M1R sing 333 n n C33 H29 M1R sing 334 n n C35 H31 M1R sing 335 n n C35 H32 M1R sing 336 n n C36 H33 M1R sing 337 n n C36 H34 M1R sing 338 n n C37 H35 M1R sing 339 n n C37 H36 M1R sing 340 n n C38 H37 M1R sing 341 n n C38 H38 M1R sing 342 n n C38 H39 M1R sing 343 n n # _atom_sites.entry_id 6USX _atom_sites.fract_transf_matrix[1][1] 0.011291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 201 GDP GDP . D 3 MG A 1 202 202 MG MG . E 4 M1R A 1 203 1 M1R SM1 . F 2 GDP B 1 201 201 GDP GDP . G 3 MG B 1 202 202 MG MG . H 4 M1R B 1 203 1 M1R SM1 . I 5 HOH A 1 301 51 HOH HOH . I 5 HOH A 2 302 61 HOH HOH . I 5 HOH A 3 303 70 HOH HOH . I 5 HOH A 4 304 32 HOH HOH . I 5 HOH A 5 305 63 HOH HOH . I 5 HOH A 6 306 60 HOH HOH . I 5 HOH A 7 307 13 HOH HOH . I 5 HOH A 8 308 41 HOH HOH . I 5 HOH A 9 309 7 HOH HOH . I 5 HOH A 10 310 30 HOH HOH . I 5 HOH A 11 311 39 HOH HOH . I 5 HOH A 12 312 6 HOH HOH . I 5 HOH A 13 313 69 HOH HOH . I 5 HOH A 14 314 26 HOH HOH . I 5 HOH A 15 315 71 HOH HOH . I 5 HOH A 16 316 2 HOH HOH . I 5 HOH A 17 317 53 HOH HOH . I 5 HOH A 18 318 9 HOH HOH . I 5 HOH A 19 319 18 HOH HOH . I 5 HOH A 20 320 21 HOH HOH . I 5 HOH A 21 321 20 HOH HOH . I 5 HOH A 22 322 15 HOH HOH . I 5 HOH A 23 323 28 HOH HOH . I 5 HOH A 24 324 52 HOH HOH . I 5 HOH A 25 325 5 HOH HOH . I 5 HOH A 26 326 45 HOH HOH . I 5 HOH A 27 327 50 HOH HOH . I 5 HOH A 28 328 3 HOH HOH . I 5 HOH A 29 329 14 HOH HOH . I 5 HOH A 30 330 19 HOH HOH . I 5 HOH A 31 331 25 HOH HOH . I 5 HOH A 32 332 47 HOH HOH . I 5 HOH A 33 333 68 HOH HOH . I 5 HOH A 34 334 10 HOH HOH . I 5 HOH A 35 335 54 HOH HOH . I 5 HOH A 36 336 74 HOH HOH . I 5 HOH A 37 337 22 HOH HOH . I 5 HOH A 38 338 24 HOH HOH . I 5 HOH A 39 339 29 HOH HOH . I 5 HOH A 40 340 38 HOH HOH . I 5 HOH A 41 341 66 HOH HOH . I 5 HOH A 42 342 48 HOH HOH . J 5 HOH B 1 301 35 HOH HOH . J 5 HOH B 2 302 62 HOH HOH . J 5 HOH B 3 303 23 HOH HOH . J 5 HOH B 4 304 8 HOH HOH . J 5 HOH B 5 305 46 HOH HOH . J 5 HOH B 6 306 43 HOH HOH . J 5 HOH B 7 307 36 HOH HOH . J 5 HOH B 8 308 56 HOH HOH . J 5 HOH B 9 309 11 HOH HOH . J 5 HOH B 10 310 49 HOH HOH . J 5 HOH B 11 311 37 HOH HOH . J 5 HOH B 12 312 31 HOH HOH . J 5 HOH B 13 313 12 HOH HOH . J 5 HOH B 14 314 27 HOH HOH . J 5 HOH B 15 315 17 HOH HOH . J 5 HOH B 16 316 67 HOH HOH . J 5 HOH B 17 317 44 HOH HOH . J 5 HOH B 18 318 40 HOH HOH . J 5 HOH B 19 319 75 HOH HOH . J 5 HOH B 20 320 42 HOH HOH . J 5 HOH B 21 321 72 HOH HOH . J 5 HOH B 22 322 65 HOH HOH . J 5 HOH B 23 323 34 HOH HOH . J 5 HOH B 24 324 33 HOH HOH . J 5 HOH B 25 325 64 HOH HOH . J 5 HOH B 26 326 57 HOH HOH . J 5 HOH B 27 327 55 HOH HOH . J 5 HOH B 28 328 16 HOH HOH . J 5 HOH B 29 329 59 HOH HOH . J 5 HOH B 30 330 73 HOH HOH . J 5 HOH B 31 331 4 HOH HOH . J 5 HOH B 32 332 1 HOH HOH . J 5 HOH B 33 333 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 M1R . . . E 4 -27.002 -27.621 23.236 1 43.88 ? C18 M1R 203 A 1 HETATM 2 N N5 M1R . . . E 4 -22.16 -26.978 27.533 1 40.53 ? N5 M1R 203 A 1 HETATM 3 C C14 M1R . . . E 4 -24.488 -24.26 30.033 1 41.95 ? C14 M1R 203 A 1 HETATM 4 C C13 M1R . . . E 4 -24.878 -25.277 28.97 1 37.28 ? C13 M1R 203 A 1 HETATM 5 C C17 M1R . . . E 4 -22.874 -26.575 29.973 1 34.96 ? C17 M1R 203 A 1 HETATM 6 C C16 M1R . . . E 4 -23.69 -26.287 31.235 1 36.7 ? C16 M1R 203 A 1 HETATM 7 N N3 M1R . . . E 4 -22.532 -27.47 25.233 1 40.06 ? N3 M1R 203 A 1 HETATM 8 C C10 M1R . . . E 4 -24.787 -27.438 24.107 1 38.45 ? C10 M1R 203 A 1 HETATM 9 C C8 M1R . . . E 4 -26.707 -27.568 25.765 1 43.48 ? C8 M1R 203 A 1 HETATM 10 C C22 M1R . . . E 4 -27.895 -26.984 21.003 1 45.56 ? C22 M1R 203 A 1 HETATM 11 C C7 M1R . . . E 4 -25.933 -26.627 26.71 1 42.92 ? C7 M1R 203 A 1 HETATM 12 C C6 M1R . . . E 4 -23.474 -26.744 27.653 1 38.38 ? C6 M1R 203 A 1 HETATM 13 C C1 M1R . . . E 4 -24.411 -26.862 26.585 1 40.17 ? C1 M1R 203 A 1 HETATM 14 C C4 M1R . . . E 4 -21.722 -27.334 26.302 1 42.67 ? C4 M1R 203 A 1 HETATM 15 C C19 M1R . . . E 4 -27.688 -28.852 23.167 1 45.29 ? C19 M1R 203 A 1 HETATM 16 C C20 M1R . . . E 4 -28.469 -29.127 22.027 1 48.76 ? C20 M1R 203 A 1 HETATM 17 C C21 M1R . . . E 4 -28.573 -28.225 20.935 1 48.43 ? C21 M1R 203 A 1 HETATM 18 C C2 M1R . . . E 4 -23.871 -27.233 25.339 1 38.8 ? C2 M1R 203 A 1 HETATM 19 N N9 M1R . . . E 4 -26.225 -27.374 24.377 1 40.08 ? N9 M1R 203 A 1 HETATM 20 O O11 M1R . . . E 4 -20.423 -27.589 26.092 1 50.29 ? O11 M1R 203 A 1 HETATM 21 N N12 M1R . . . E 4 -23.853 -26.347 28.9 1 45.72 ? N12 M1R 203 A 1 HETATM 22 N N15 M1R . . . E 4 -24.178 -24.899 31.339 1 35.4 ? N15 M1R 203 A 1 HETATM 23 C C23 M1R . . . E 4 -27.111 -26.688 22.153 1 41.41 ? C23 M1R 203 A 1 HETATM 24 C C24 M1R . . . E 4 -28.035 -26.085 19.917 1 41.93 ? C24 M1R 203 A 1 HETATM 25 C C25 M1R . . . E 4 -27.366 -24.845 20.009 1 49.68 ? C25 M1R 203 A 1 HETATM 26 C C26 M1R . . . E 4 -26.576 -24.518 21.136 1 42.56 ? C26 M1R 203 A 1 HETATM 27 C C27 M1R . . . E 4 -26.441 -25.442 22.204 1 42.08 ? C27 M1R 203 A 1 HETATM 28 C C28 M1R . . . E 4 -19.427 -27.506 27.097 1 45.1 ? C28 M1R 203 A 1 HETATM 29 C C29 M1R . . . E 4 -24.234 -24.138 32.498 1 43.05 ? C29 M1R 203 A 1 HETATM 30 C C30 M1R . . . E 4 -23.849 -24.657 33.794 1 35.73 ? C30 M1R 203 A 1 HETATM 31 O O31 M1R . . . E 4 -24.517 -22.948 32.306 1 37.33 ? O31 M1R 203 A 1 HETATM 32 C C32 M1R . . . E 4 -22.544 -24.342 34.27 1 41.02 ? C32 M1R 203 A 1 HETATM 33 C C33 M1R . . . E 4 -18.086 -27.792 26.43 1 40.5 ? C33 M1R 203 A 1 HETATM 34 N N34 M1R . . . E 4 -18.033 -29.215 26.015 1 51.45 ? N34 M1R 203 A 1 HETATM 35 C C35 M1R . . . E 4 -17.638 -29.323 24.553 1 45.44 ? C35 M1R 203 A 1 HETATM 36 C C36 M1R . . . E 4 -17.251 -27.886 24.084 1 39.77 ? C36 M1R 203 A 1 HETATM 37 C C37 M1R . . . E 4 -17.871 -26.922 25.146 1 34.5 ? C37 M1R 203 A 1 HETATM 38 C C38 M1R . . . E 4 -16.974 -29.775 26.922 1 50.83 ? C38 M1R 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #