data_6USZ # _model_server_result.job_id 1jMM4RYPcqTmXCFeSiE1ZA _model_server_result.datetime_utc '2024-12-18 15:19:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6usz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6USZ # _exptl.entry_id 6USZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 553.698 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {(2S)-4-[2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-1-propanoylpiperazin-2-yl}acetonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6USZ _cell.length_a 39.769 _cell.length_b 50.9 _cell.length_c 89.649 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6USZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 D C39 QH4 . A QH4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.685 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 B O2B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 C MG MG . A MG 202 1_555 E O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc4 C MG MG . A MG 202 1_555 E O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? # _chem_comp.formula 'C32 H39 N7 O2' _chem_comp.formula_weight 553.698 _chem_comp.id QH4 _chem_comp.mon_nstd_flag . _chem_comp.name {(2S)-4-[2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-1-propanoylpiperazin-2-yl}acetonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 QH4 doub 322 n y C28 C29 QH4 sing 323 n y C27 C26 QH4 sing 324 n y C29 C30 QH4 doub 325 n y C8 N9 QH4 sing 326 n n C8 C7 QH4 sing 327 n n C26 N9 QH4 sing 328 n n C26 C31 QH4 doub 329 n y N9 C10 QH4 sing 330 n n C7 C1 QH4 sing 331 n n C30 C31 QH4 sing 332 n y C30 C32 QH4 sing 333 n y C10 C2 QH4 sing 334 n n C31 C35 QH4 sing 335 n y C1 C2 QH4 doub 336 n y C1 C6 QH4 sing 337 n y C2 N3 QH4 sing 338 n y N12 C6 QH4 sing 339 n n N12 C13 QH4 sing 340 n n N12 C17 QH4 sing 341 n n C6 N5 QH4 doub 342 n y C13 C14 QH4 sing 343 n n N3 C4 QH4 doub 344 n y C32 C33 QH4 doub 345 n y C14 N15 QH4 sing 346 n n C25 N21 QH4 sing 347 n n C17 C16 QH4 sing 348 n n N5 C4 QH4 sing 349 n y C4 O11 QH4 sing 350 n n N21 C22 QH4 sing 351 n n N21 C20 QH4 sing 352 n n C35 C34 QH4 doub 353 n y O11 C19 QH4 sing 354 n n C19 C20 QH4 sing 355 n n N15 C16 QH4 sing 356 n n N15 C36 QH4 sing 357 n n C22 C23 QH4 sing 358 n n C33 C34 QH4 sing 359 n y C16 C18 QH4 sing 360 n n C38 C36 QH4 sing 361 n n C38 C39 QH4 sing 362 n n C20 C24 QH4 sing 363 n n C36 O37 QH4 doub 364 n n C23 C24 QH4 sing 365 n n C18 C40 QH4 sing 366 n n C40 N41 QH4 trip 367 n n C18 H1 QH4 sing 368 n n C18 H2 QH4 sing 369 n n C14 H3 QH4 sing 370 n n C14 H4 QH4 sing 371 n n C13 H5 QH4 sing 372 n n C13 H6 QH4 sing 373 n n C17 H7 QH4 sing 374 n n C17 H8 QH4 sing 375 n n C16 H9 QH4 sing 376 n n C10 H10 QH4 sing 377 n n C10 H11 QH4 sing 378 n n C8 H12 QH4 sing 379 n n C8 H13 QH4 sing 380 n n C22 H14 QH4 sing 381 n n C22 H15 QH4 sing 382 n n C7 H16 QH4 sing 383 n n C7 H17 QH4 sing 384 n n C19 H18 QH4 sing 385 n n C19 H19 QH4 sing 386 n n C20 H20 QH4 sing 387 n n C23 H22 QH4 sing 388 n n C23 H23 QH4 sing 389 n n C24 H24 QH4 sing 390 n n C24 H25 QH4 sing 391 n n C25 H26 QH4 sing 392 n n C25 H27 QH4 sing 393 n n C25 H28 QH4 sing 394 n n C27 H29 QH4 sing 395 n n C28 H30 QH4 sing 396 n n C29 H31 QH4 sing 397 n n C32 H32 QH4 sing 398 n n C33 H33 QH4 sing 399 n n C34 H34 QH4 sing 400 n n C35 H35 QH4 sing 401 n n C38 H36 QH4 sing 402 n n C38 H37 QH4 sing 403 n n C39 H38 QH4 sing 404 n n C39 H39 QH4 sing 405 n n C39 H40 QH4 sing 406 n n # _atom_sites.entry_id 6USZ _atom_sites.fract_transf_matrix[1][1] 0.025145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 MG A 1 202 202 MG MG . D 4 QH4 A 1 203 1 QH4 SM1 . E 5 HOH A 1 301 39 HOH HOH . E 5 HOH A 2 302 51 HOH HOH . E 5 HOH A 3 303 33 HOH HOH . E 5 HOH A 4 304 119 HOH HOH . E 5 HOH A 5 305 114 HOH HOH . E 5 HOH A 6 306 84 HOH HOH . E 5 HOH A 7 307 121 HOH HOH . E 5 HOH A 8 308 99 HOH HOH . E 5 HOH A 9 309 112 HOH HOH . E 5 HOH A 10 310 67 HOH HOH . E 5 HOH A 11 311 101 HOH HOH . E 5 HOH A 12 312 7 HOH HOH . E 5 HOH A 13 313 116 HOH HOH . E 5 HOH A 14 314 73 HOH HOH . E 5 HOH A 15 315 12 HOH HOH . E 5 HOH A 16 316 40 HOH HOH . E 5 HOH A 17 317 30 HOH HOH . E 5 HOH A 18 318 52 HOH HOH . E 5 HOH A 19 319 29 HOH HOH . E 5 HOH A 20 320 91 HOH HOH . E 5 HOH A 21 321 16 HOH HOH . E 5 HOH A 22 322 14 HOH HOH . E 5 HOH A 23 323 88 HOH HOH . E 5 HOH A 24 324 118 HOH HOH . E 5 HOH A 25 325 4 HOH HOH . E 5 HOH A 26 326 100 HOH HOH . E 5 HOH A 27 327 49 HOH HOH . E 5 HOH A 28 328 64 HOH HOH . E 5 HOH A 29 329 15 HOH HOH . E 5 HOH A 30 330 19 HOH HOH . E 5 HOH A 31 331 1 HOH HOH . E 5 HOH A 32 332 21 HOH HOH . E 5 HOH A 33 333 86 HOH HOH . E 5 HOH A 34 334 77 HOH HOH . E 5 HOH A 35 335 74 HOH HOH . E 5 HOH A 36 336 97 HOH HOH . E 5 HOH A 37 337 32 HOH HOH . E 5 HOH A 38 338 63 HOH HOH . E 5 HOH A 39 339 57 HOH HOH . E 5 HOH A 40 340 56 HOH HOH . E 5 HOH A 41 341 62 HOH HOH . E 5 HOH A 42 342 18 HOH HOH . E 5 HOH A 43 343 20 HOH HOH . E 5 HOH A 44 344 23 HOH HOH . E 5 HOH A 45 345 24 HOH HOH . E 5 HOH A 46 346 25 HOH HOH . E 5 HOH A 47 347 61 HOH HOH . E 5 HOH A 48 348 36 HOH HOH . E 5 HOH A 49 349 5 HOH HOH . E 5 HOH A 50 350 111 HOH HOH . E 5 HOH A 51 351 89 HOH HOH . E 5 HOH A 52 352 117 HOH HOH . E 5 HOH A 53 353 44 HOH HOH . E 5 HOH A 54 354 95 HOH HOH . E 5 HOH A 55 355 104 HOH HOH . E 5 HOH A 56 356 60 HOH HOH . E 5 HOH A 57 357 85 HOH HOH . E 5 HOH A 58 358 78 HOH HOH . E 5 HOH A 59 359 108 HOH HOH . E 5 HOH A 60 360 8 HOH HOH . E 5 HOH A 61 361 13 HOH HOH . E 5 HOH A 62 362 69 HOH HOH . E 5 HOH A 63 363 115 HOH HOH . E 5 HOH A 64 364 50 HOH HOH . E 5 HOH A 65 365 47 HOH HOH . E 5 HOH A 66 366 75 HOH HOH . E 5 HOH A 67 367 10 HOH HOH . E 5 HOH A 68 368 17 HOH HOH . E 5 HOH A 69 369 54 HOH HOH . E 5 HOH A 70 370 6 HOH HOH . E 5 HOH A 71 371 81 HOH HOH . E 5 HOH A 72 372 80 HOH HOH . E 5 HOH A 73 373 48 HOH HOH . E 5 HOH A 74 374 42 HOH HOH . E 5 HOH A 75 375 2 HOH HOH . E 5 HOH A 76 376 90 HOH HOH . E 5 HOH A 77 377 106 HOH HOH . E 5 HOH A 78 378 28 HOH HOH . E 5 HOH A 79 379 71 HOH HOH . E 5 HOH A 80 380 27 HOH HOH . E 5 HOH A 81 381 9 HOH HOH . E 5 HOH A 82 382 59 HOH HOH . E 5 HOH A 83 383 43 HOH HOH . E 5 HOH A 84 384 68 HOH HOH . E 5 HOH A 85 385 22 HOH HOH . E 5 HOH A 86 386 94 HOH HOH . E 5 HOH A 87 387 26 HOH HOH . E 5 HOH A 88 388 3 HOH HOH . E 5 HOH A 89 389 98 HOH HOH . E 5 HOH A 90 390 83 HOH HOH . E 5 HOH A 91 391 11 HOH HOH . E 5 HOH A 92 392 79 HOH HOH . E 5 HOH A 93 393 109 HOH HOH . E 5 HOH A 94 394 38 HOH HOH . E 5 HOH A 95 395 45 HOH HOH . E 5 HOH A 96 396 93 HOH HOH . E 5 HOH A 97 397 107 HOH HOH . E 5 HOH A 98 398 120 HOH HOH . E 5 HOH A 99 399 110 HOH HOH . E 5 HOH A 100 400 103 HOH HOH . E 5 HOH A 101 401 34 HOH HOH . E 5 HOH A 102 402 76 HOH HOH . E 5 HOH A 103 403 35 HOH HOH . E 5 HOH A 104 404 37 HOH HOH . E 5 HOH A 105 405 87 HOH HOH . E 5 HOH A 106 406 82 HOH HOH . E 5 HOH A 107 407 105 HOH HOH . E 5 HOH A 108 408 58 HOH HOH . E 5 HOH A 109 409 92 HOH HOH . E 5 HOH A 110 410 66 HOH HOH . E 5 HOH A 111 411 102 HOH HOH . E 5 HOH A 112 412 53 HOH HOH . E 5 HOH A 113 413 41 HOH HOH . E 5 HOH A 114 414 122 HOH HOH . E 5 HOH A 115 415 113 HOH HOH . E 5 HOH A 116 416 55 HOH HOH . E 5 HOH A 117 417 70 HOH HOH . E 5 HOH A 118 418 31 HOH HOH . E 5 HOH A 119 419 96 HOH HOH . E 5 HOH A 120 420 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 QH4 . . . D 4 24.638 1.379 -20.293 1 6.68 ? C18 QH4 203 A 1 HETATM 2 N N5 QH4 . . . D 4 24.615 4.363 -22.595 1 9.5 ? N5 QH4 203 A 1 HETATM 3 C C14 QH4 . . . D 4 26.959 0.987 -22.824 1 8.78 ? C14 QH4 203 A 1 HETATM 4 C C13 QH4 . . . D 4 26.192 2.3 -22.993 1 8.58 ? C13 QH4 203 A 1 HETATM 5 C C17 QH4 . . . D 4 24.104 0.815 -22.627 1 7.18 ? C17 QH4 203 A 1 HETATM 6 C C16 QH4 . . . D 4 24.893 0.329 -21.39 1 6.97 ? C16 QH4 203 A 1 HETATM 7 N N3 QH4 . . . D 4 22.584 5.607 -22.856 1 9.25 ? N3 QH4 203 A 1 HETATM 8 C C10 QH4 . . . D 4 20.473 4.665 -23.671 1 8.71 ? C10 QH4 203 A 1 HETATM 9 C C8 QH4 . . . D 4 20.82 2.572 -24.939 1 9.27 ? C8 QH4 203 A 1 HETATM 10 C C22 QH4 . . . D 4 26.017 10.378 -21.564 1 26.24 ? C22 QH4 203 A 1 HETATM 11 C C7 QH4 . . . D 4 21.883 2.063 -23.959 1 8.94 ? C7 QH4 203 A 1 HETATM 12 C C6 QH4 . . . D 4 23.954 3.266 -23.048 1 9.55 ? C6 QH4 203 A 1 HETATM 13 C C1 QH4 . . . D 4 22.596 3.313 -23.406 1 9.25 ? C1 QH4 203 A 1 HETATM 14 C C4 QH4 . . . D 4 23.896 5.502 -22.542 1 9.88 ? C4 QH4 203 A 1 HETATM 15 C C19 QH4 . . . D 4 25.866 6.7 -21.899 1 13.09 ? C19 QH4 203 A 1 HETATM 16 C C20 QH4 . . . D 4 26.241 8.012 -21.171 1 17.99 ? C20 QH4 203 A 1 HETATM 17 C C2 QH4 . . . D 4 21.937 4.539 -23.293 1 8.29 ? C2 QH4 203 A 1 HETATM 18 N N9 QH4 . . . D 4 19.93 3.355 -24.034 1 9.57 ? N9 QH4 203 A 1 HETATM 19 O O11 QH4 . . . D 4 24.504 6.658 -22.128 1 10.72 ? O11 QH4 203 A 1 HETATM 20 N N12 QH4 . . . D 4 24.705 2.028 -23.187 1 8.63 ? N12 QH4 203 A 1 HETATM 21 N N15 QH4 . . . D 4 26.385 0.229 -21.628 1 8.06 ? N15 QH4 203 A 1 HETATM 22 N N21 QH4 . . . D 4 26.376 9.07 -22.285 1 20.51 ? N21 QH4 203 A 1 HETATM 23 C C23 QH4 . . . D 4 24.814 9.951 -20.684 1 20.22 ? C23 QH4 203 A 1 HETATM 24 C C24 QH4 . . . D 4 25.107 8.517 -20.275 1 16.25 ? C24 QH4 203 A 1 HETATM 25 C C25 QH4 . . . D 4 27.839 9.13 -22.777 1 23.74 ? C25 QH4 203 A 1 HETATM 26 C C26 QH4 . . . D 4 18.536 3.479 -24.469 1 9.5 ? C26 QH4 203 A 1 HETATM 27 C C27 QH4 . . . D 4 18.175 3.549 -25.823 1 10.97 ? C27 QH4 203 A 1 HETATM 28 C C28 QH4 . . . D 4 16.804 3.672 -26.178 1 11.05 ? C28 QH4 203 A 1 HETATM 29 C C29 QH4 . . . D 4 15.781 3.725 -25.213 1 9.39 ? C29 QH4 203 A 1 HETATM 30 C C30 QH4 . . . D 4 16.153 3.649 -23.847 1 9.5 ? C30 QH4 203 A 1 HETATM 31 C C31 QH4 . . . D 4 17.524 3.535 -23.489 1 8.42 ? C31 QH4 203 A 1 HETATM 32 C C32 QH4 . . . D 4 15.174 3.7 -22.834 1 8.52 ? C32 QH4 203 A 1 HETATM 33 C C33 QH4 . . . D 4 15.544 3.636 -21.465 1 6.99 ? C33 QH4 203 A 1 HETATM 34 C C34 QH4 . . . D 4 16.892 3.51 -21.145 1 7.12 ? C34 QH4 203 A 1 HETATM 35 C C35 QH4 . . . D 4 17.888 3.467 -22.146 1 7.31 ? C35 QH4 203 A 1 HETATM 36 C C36 QH4 . . . D 4 27.155 -0.592 -20.822 1 10.47 ? C36 QH4 203 A 1 HETATM 37 O O37 QH4 . . . D 4 26.726 -0.957 -19.699 1 10.5 ? O37 QH4 203 A 1 HETATM 38 C C38 QH4 . . . D 4 28.621 -0.882 -21.305 1 11.55 ? C38 QH4 203 A 1 HETATM 39 C C39 QH4 . . . D 4 29.716 -0.607 -20.219 1 14.93 ? C39 QH4 203 A 1 HETATM 40 C C40 QH4 . . . D 4 23.232 1.202 -19.747 1 6.49 ? C40 QH4 203 A 1 HETATM 41 N N41 QH4 . . . D 4 22.147 1.202 -19.331 1 5.39 ? N41 QH4 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #