data_6UUW # _model_server_result.job_id vFSIG5d7A-E2eyctOzuivw _model_server_result.datetime_utc '2024-11-26 22:40:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uuw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1201}' # _entry.id 6UUW # _exptl.entry_id 6UUW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 L N N ? 2 P N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6UUW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 1201 1201 ADP ADP . F 3 COA A 1 1202 2002 COA COA . G 4 Y2A A 1 1203 2003 Y2A LIG . H 5 UNL A 1 1204 2301 UNL UNL . I 2 ADP B 1 1201 1201 ADP ADP . J 3 COA B 1 1202 2002 COA COA . K 4 Y2A B 1 1203 2003 Y2A LIG . L 2 ADP C 1 1201 1201 ADP ADP . M 3 COA C 1 1202 2002 COA COA . N 4 Y2A C 1 1203 2003 Y2A LIG . O 5 UNL C 1 1204 2301 UNL UNL . P 2 ADP D 1 1201 1201 ADP ADP . Q 3 COA D 1 1202 2002 COA COA . R 4 Y2A D 1 1203 2003 Y2A LIG . S 6 HOH A 1 1301 1303 HOH HOH . S 6 HOH A 2 1302 1301 HOH HOH . S 6 HOH A 3 1303 1302 HOH HOH . S 6 HOH A 4 1304 1305 HOH HOH . S 6 HOH A 5 1305 1304 HOH HOH . S 6 HOH A 6 1306 1306 HOH HOH . S 6 HOH A 7 1307 1307 HOH HOH . T 6 HOH B 1 1301 1301 HOH HOH . T 6 HOH B 2 1302 1304 HOH HOH . T 6 HOH B 3 1303 1303 HOH HOH . T 6 HOH B 4 1304 1302 HOH HOH . T 6 HOH B 5 1305 1305 HOH HOH . T 6 HOH B 6 1306 1306 HOH HOH . U 6 HOH C 1 1301 1301 HOH HOH . U 6 HOH C 2 1302 1302 HOH HOH . U 6 HOH C 3 1303 1304 HOH HOH . U 6 HOH C 4 1304 1305 HOH HOH . U 6 HOH C 5 1305 1303 HOH HOH . U 6 HOH C 6 1306 1305 HOH HOH . U 6 HOH C 7 1307 1306 HOH HOH . V 6 HOH D 1 1301 1301 HOH HOH . V 6 HOH D 2 1302 1302 HOH HOH . V 6 HOH D 3 1303 1303 HOH HOH . V 6 HOH D 4 1304 1306 HOH HOH . V 6 HOH D 5 1305 1304 HOH HOH . V 6 HOH D 6 1306 1307 HOH HOH . V 6 HOH D 7 1307 1308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 38.921 43.324 -58.869 1 70.21 ? PB ADP 1201 A 1 HETATM 2 O O1B ADP . . . E 2 38.992 44.429 -59.894 1 70.21 ? O1B ADP 1201 A 1 HETATM 3 O O2B ADP . . . E 2 37.7 43.36 -57.982 1 70.21 -1 O2B ADP 1201 A 1 HETATM 4 O O3B ADP . . . E 2 40.224 43.142 -58.13 1 70.21 ? O3B ADP 1201 A 1 HETATM 5 P PA ADP . . . E 2 39.447 40.576 -59.588 1 70.21 ? PA ADP 1201 A 1 HETATM 6 O O1A ADP . . . E 2 38.6 39.55 -60.299 1 70.21 -1 O1A ADP 1201 A 1 HETATM 7 O O2A ADP . . . E 2 39.76 40.351 -58.128 1 70.21 ? O2A ADP 1201 A 1 HETATM 8 O O3A ADP . . . E 2 38.686 41.993 -59.758 1 70.21 ? O3A ADP 1201 A 1 HETATM 9 O O5' ADP . . . E 2 40.819 40.686 -60.43 1 70.21 ? O5' ADP 1201 A 1 HETATM 10 C C5' ADP . . . E 2 41.127 41.774 -61.301 1 70.21 ? C5' ADP 1201 A 1 HETATM 11 C C4' ADP . . . E 2 42.138 41.312 -62.348 1 70.21 ? C4' ADP 1201 A 1 HETATM 12 O O4' ADP . . . E 2 42.801 40.119 -61.923 1 70.21 ? O4' ADP 1201 A 1 HETATM 13 C C3' ADP . . . E 2 41.477 40.99 -63.681 1 70.21 ? C3' ADP 1201 A 1 HETATM 14 O O3' ADP . . . E 2 41.858 41.965 -64.656 1 70.21 ? O3' ADP 1201 A 1 HETATM 15 C C2' ADP . . . E 2 41.997 39.628 -64.095 1 70.21 ? C2' ADP 1201 A 1 HETATM 16 O O2' ADP . . . E 2 42.656 39.72 -65.359 1 70.21 ? O2' ADP 1201 A 1 HETATM 17 C C1' ADP . . . E 2 43.002 39.232 -63.029 1 70.21 ? C1' ADP 1201 A 1 HETATM 18 N N9 ADP . . . E 2 42.792 37.83 -62.591 1 70.21 ? N9 ADP 1201 A 1 HETATM 19 C C8 ADP . . . E 2 42.142 37.474 -61.475 1 70.21 ? C8 ADP 1201 A 1 HETATM 20 N N7 ADP . . . E 2 42.112 36.129 -61.313 1 70.21 ? N7 ADP 1201 A 1 HETATM 21 C C5 ADP . . . E 2 42.758 35.592 -62.359 1 70.21 ? C5 ADP 1201 A 1 HETATM 22 C C6 ADP . . . E 2 43.089 34.221 -62.81 1 70.21 ? C6 ADP 1201 A 1 HETATM 23 N N6 ADP . . . E 2 42.711 33.134 -62.093 1 70.21 ? N6 ADP 1201 A 1 HETATM 24 N N1 ADP . . . E 2 43.778 34.092 -63.964 1 70.21 ? N1 ADP 1201 A 1 HETATM 25 C C2 ADP . . . E 2 44.156 35.165 -64.682 1 70.21 ? C2 ADP 1201 A 1 HETATM 26 N N3 ADP . . . E 2 43.893 36.436 -64.332 1 70.21 ? N3 ADP 1201 A 1 HETATM 27 C C4 ADP . . . E 2 43.208 36.715 -63.199 1 70.21 ? C4 ADP 1201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #