data_6UVD
#
_model_server_result.job_id            nbcGx6AunJfKthzB5JKlxw 
_model_server_result.datetime_utc      '2024-11-22 20:39:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    6UVD 
#
_exptl.entry_id    6UVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.657 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-3-(Benzylsulfanyl)-2-({[(4-methylphenyl)methyl] [(4 phenylphenyl)carbonyl] carbamoyl}amino) propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6UVD 
_cell.length_a            97.149 
_cell.length_b            97.149 
_cell.length_c            74.235 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 M N N 
#
_chem_comp.formula           'C32 H30 N2 O4 S' 
_chem_comp.formula_weight    538.657 
_chem_comp.id                XOU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-3-(Benzylsulfanyl)-2-({[(4-methylphenyl)methyl] [(4 phenylphenyl)carbonyl] carbamoyl}amino) propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C3 XOU doub 389 n y 
C4 C5 XOU sing 390 n y 
C3 C2 XOU sing 391 n y 
C5 C6 XOU doub 392 n y 
C2 C1 XOU doub 393 n y 
C6 C1 XOU sing 394 n y 
C6 C7 XOU sing 395 n n 
C7 C8 XOU doub 396 n y 
C7 C12 XOU sing 397 n y 
C8 C9 XOU sing 398 n y 
C12 C11 XOU doub 399 n y 
O4 C24 XOU doub 400 n n 
C9 C10 XOU doub 401 n y 
C11 C10 XOU sing 402 n y 
C10 C13 XOU sing 403 n n 
O1 C13 XOU doub 404 n n 
C24 O3 XOU sing 405 n n 
C24 C23 XOU sing 406 n n 
C13 N1 XOU sing 407 n n 
N2 C23 XOU sing 408 n n 
N2 C22 XOU sing 409 n n 
C23 C25 XOU sing 410 n n 
N1 C22 XOU sing 411 n n 
N1 C14 XOU sing 412 n n 
C22 O2 XOU doub 413 n n 
C14 C15 XOU sing 414 n n 
C25 S1 XOU sing 415 n n 
S1 C26 XOU sing 416 n n 
C15 C16 XOU doub 417 n y 
C15 C21 XOU sing 418 n y 
C16 C17 XOU sing 419 n y 
C26 C27 XOU sing 420 n n 
C21 C20 XOU doub 421 n y 
C17 C18 XOU doub 422 n y 
C27 C28 XOU doub 423 n y 
C27 C32 XOU sing 424 n y 
C28 C29 XOU sing 425 n y 
C32 C31 XOU doub 426 n y 
C20 C18 XOU sing 427 n y 
C18 C19 XOU sing 428 n n 
C29 C30 XOU doub 429 n y 
C31 C30 XOU sing 430 n y 
N2 H1 XOU sing 431 n n 
C1 H2 XOU sing 432 n n 
C2 H3 XOU sing 433 n n 
C3 H4 XOU sing 434 n n 
C4 H5 XOU sing 435 n n 
C5 H6 XOU sing 436 n n 
C8 H7 XOU sing 437 n n 
C9 H8 XOU sing 438 n n 
C11 H9 XOU sing 439 n n 
C12 H10 XOU sing 440 n n 
C14 H11 XOU sing 441 n n 
C14 H12 XOU sing 442 n n 
C16 H13 XOU sing 443 n n 
C17 H14 XOU sing 444 n n 
C19 H15 XOU sing 445 n n 
C19 H16 XOU sing 446 n n 
C19 H17 XOU sing 447 n n 
C20 H18 XOU sing 448 n n 
C21 H19 XOU sing 449 n n 
C23 H20 XOU sing 450 n n 
C25 H21 XOU sing 451 n n 
C25 H22 XOU sing 452 n n 
C26 H23 XOU sing 453 n n 
C26 H24 XOU sing 454 n n 
C28 H25 XOU sing 455 n n 
C29 H26 XOU sing 456 n n 
C30 H27 XOU sing 457 n n 
C31 H28 XOU sing 458 n n 
C32 H29 XOU sing 459 n n 
O3 H30 XOU sing 460 n n 
#
_atom_sites.entry_id                     6UVD 
_atom_sites.fract_transf_matrix[1][1]    0.010293 
_atom_sites.fract_transf_matrix[1][2]    0.005943 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XOU A 1 301 1 XOU LIG . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 3 SO4 A 1 303 2 SO4 SO4 . 
F 3 SO4 A 1 304 3 SO4 SO4 . 
G 4 EDO A 1 305 1 EDO EDO . 
H 4 EDO A 1 306 4 EDO EDO . 
I 4 EDO A 1 307 8 EDO EDO . 
J 4 EDO A 1 308 9 EDO EDO . 
K 4 EDO A 1 309 10 EDO EDO . 
L 4 EDO A 1 310 11 EDO EDO . 
M 2 XOU B 1 301 2 XOU LIG . 
N 4 EDO B 1 302 2 EDO EDO . 
O 4 EDO B 1 303 3 EDO EDO . 
P 4 EDO B 1 304 5 EDO EDO . 
Q 4 EDO B 1 305 6 EDO EDO . 
R 4 EDO B 1 306 7 EDO EDO . 
S 5 HOH A 1 401 47 HOH HOH . 
S 5 HOH A 2 402 46 HOH HOH . 
S 5 HOH A 3 403 95 HOH HOH . 
S 5 HOH A 4 404 51 HOH HOH . 
S 5 HOH A 5 405 21 HOH HOH . 
S 5 HOH A 6 406 66 HOH HOH . 
S 5 HOH A 7 407 39 HOH HOH . 
S 5 HOH A 8 408 71 HOH HOH . 
S 5 HOH A 9 409 56 HOH HOH . 
S 5 HOH A 10 410 97 HOH HOH . 
S 5 HOH A 11 411 53 HOH HOH . 
S 5 HOH A 12 412 57 HOH HOH . 
S 5 HOH A 13 413 102 HOH HOH . 
S 5 HOH A 14 414 37 HOH HOH . 
S 5 HOH A 15 415 93 HOH HOH . 
S 5 HOH A 16 416 20 HOH HOH . 
S 5 HOH A 17 417 67 HOH HOH . 
S 5 HOH A 18 418 4 HOH HOH . 
S 5 HOH A 19 419 80 HOH HOH . 
S 5 HOH A 20 420 62 HOH HOH . 
S 5 HOH A 21 421 2 HOH HOH . 
S 5 HOH A 22 422 41 HOH HOH . 
S 5 HOH A 23 423 31 HOH HOH . 
S 5 HOH A 24 424 24 HOH HOH . 
S 5 HOH A 25 425 100 HOH HOH . 
S 5 HOH A 26 426 74 HOH HOH . 
S 5 HOH A 27 427 89 HOH HOH . 
S 5 HOH A 28 428 5 HOH HOH . 
S 5 HOH A 29 429 96 HOH HOH . 
S 5 HOH A 30 430 35 HOH HOH . 
S 5 HOH A 31 431 82 HOH HOH . 
S 5 HOH A 32 432 26 HOH HOH . 
S 5 HOH A 33 433 84 HOH HOH . 
S 5 HOH A 34 434 29 HOH HOH . 
S 5 HOH A 35 435 16 HOH HOH . 
S 5 HOH A 36 436 68 HOH HOH . 
S 5 HOH A 37 437 44 HOH HOH . 
S 5 HOH A 38 438 99 HOH HOH . 
S 5 HOH A 39 439 40 HOH HOH . 
S 5 HOH A 40 440 17 HOH HOH . 
S 5 HOH A 41 441 28 HOH HOH . 
S 5 HOH A 42 442 50 HOH HOH . 
S 5 HOH A 43 443 103 HOH HOH . 
S 5 HOH A 44 444 27 HOH HOH . 
S 5 HOH A 45 445 75 HOH HOH . 
S 5 HOH A 46 446 60 HOH HOH . 
S 5 HOH A 47 447 9 HOH HOH . 
S 5 HOH A 48 448 107 HOH HOH . 
S 5 HOH A 49 449 1 HOH HOH . 
S 5 HOH A 50 450 25 HOH HOH . 
S 5 HOH A 51 451 34 HOH HOH . 
S 5 HOH A 52 452 64 HOH HOH . 
S 5 HOH A 53 453 111 HOH HOH . 
S 5 HOH A 54 454 63 HOH HOH . 
S 5 HOH A 55 455 19 HOH HOH . 
S 5 HOH A 56 456 38 HOH HOH . 
S 5 HOH A 57 457 32 HOH HOH . 
S 5 HOH A 58 458 33 HOH HOH . 
S 5 HOH A 59 459 70 HOH HOH . 
S 5 HOH A 60 460 61 HOH HOH . 
S 5 HOH A 61 461 101 HOH HOH . 
S 5 HOH A 62 462 45 HOH HOH . 
S 5 HOH A 63 463 42 HOH HOH . 
S 5 HOH A 64 464 105 HOH HOH . 
S 5 HOH A 65 465 108 HOH HOH . 
S 5 HOH A 66 466 92 HOH HOH . 
S 5 HOH A 67 467 49 HOH HOH . 
S 5 HOH A 68 468 48 HOH HOH . 
S 5 HOH A 69 469 91 HOH HOH . 
T 5 HOH B 1 401 7 HOH HOH . 
T 5 HOH B 2 402 54 HOH HOH . 
T 5 HOH B 3 403 30 HOH HOH . 
T 5 HOH B 4 404 18 HOH HOH . 
T 5 HOH B 5 405 10 HOH HOH . 
T 5 HOH B 6 406 94 HOH HOH . 
T 5 HOH B 7 407 15 HOH HOH . 
T 5 HOH B 8 408 85 HOH HOH . 
T 5 HOH B 9 409 87 HOH HOH . 
T 5 HOH B 10 410 14 HOH HOH . 
T 5 HOH B 11 411 104 HOH HOH . 
T 5 HOH B 12 412 11 HOH HOH . 
T 5 HOH B 13 413 76 HOH HOH . 
T 5 HOH B 14 414 36 HOH HOH . 
T 5 HOH B 15 415 90 HOH HOH . 
T 5 HOH B 16 416 72 HOH HOH . 
T 5 HOH B 17 417 6 HOH HOH . 
T 5 HOH B 18 418 8 HOH HOH . 
T 5 HOH B 19 419 12 HOH HOH . 
T 5 HOH B 20 420 86 HOH HOH . 
T 5 HOH B 21 421 83 HOH HOH . 
T 5 HOH B 22 422 13 HOH HOH . 
T 5 HOH B 23 423 52 HOH HOH . 
T 5 HOH B 24 424 79 HOH HOH . 
T 5 HOH B 25 425 3 HOH HOH . 
T 5 HOH B 26 426 77 HOH HOH . 
T 5 HOH B 27 427 69 HOH HOH . 
T 5 HOH B 28 428 22 HOH HOH . 
T 5 HOH B 29 429 109 HOH HOH . 
T 5 HOH B 30 430 23 HOH HOH . 
T 5 HOH B 31 431 58 HOH HOH . 
T 5 HOH B 32 432 88 HOH HOH . 
T 5 HOH B 33 433 81 HOH HOH . 
T 5 HOH B 34 434 59 HOH HOH . 
T 5 HOH B 35 435 55 HOH HOH . 
T 5 HOH B 36 436 78 HOH HOH . 
T 5 HOH B 37 437 98 HOH HOH . 
T 5 HOH B 38 438 73 HOH HOH . 
T 5 HOH B 39 439 65 HOH HOH . 
T 5 HOH B 40 440 110 HOH HOH . 
T 5 HOH B 41 441 43 HOH HOH . 
T 5 HOH B 42 442 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 XOU . . . M 2 37.795 -33.472 5.01 1 46.16 ? N1 XOU 301 B 1 
HETATM 2 N N2 XOU . . . M 2 36.506 -31.583 5.629 1 46.81 ? N2 XOU 301 B 1 
HETATM 3 C C1 XOU . . . M 2 38.277 -27.562 0.397 1 40.67 ? C1 XOU 301 B 1 
HETATM 4 C C2 XOU . . . M 2 38.413 -26.6 -0.597 1 41.58 ? C2 XOU 301 B 1 
HETATM 5 C C3 XOU . . . M 2 38.005 -26.871 -1.896 1 41.56 ? C3 XOU 301 B 1 
HETATM 6 C C4 XOU . . . M 2 37.49 -28.118 -2.206 1 40 ? C4 XOU 301 B 1 
HETATM 7 C C5 XOU . . . M 2 37.364 -29.087 -1.218 1 40.62 ? C5 XOU 301 B 1 
HETATM 8 C C6 XOU . . . M 2 37.739 -28.819 0.106 1 40.73 ? C6 XOU 301 B 1 
HETATM 9 C C7 XOU . . . M 2 37.558 -29.841 1.171 1 43.24 ? C7 XOU 301 B 1 
HETATM 10 C C8 XOU . . . M 2 36.523 -30.781 1.096 1 45 ? C8 XOU 301 B 1 
HETATM 11 C C9 XOU . . . M 2 36.46 -31.854 1.97 1 41.99 ? C9 XOU 301 B 1 
HETATM 12 O O1 XOU . . . M 2 37.372 -34.379 2.976 1 48.64 ? O1 XOU 301 B 1 
HETATM 13 O O2 XOU . . . M 2 37.816 -32.633 7.161 1 47.63 ? O2 XOU 301 B 1 
HETATM 14 C C10 XOU . . . M 2 37.438 -32.034 2.947 1 43.24 ? C10 XOU 301 B 1 
HETATM 15 C C11 XOU . . . M 2 38.429 -31.055 3.082 1 40.46 ? C11 XOU 301 B 1 
HETATM 16 C C12 XOU . . . M 2 38.483 -29.979 2.209 1 38.46 ? C12 XOU 301 B 1 
HETATM 17 C C13 XOU . . . M 2 37.509 -33.366 3.629 1 45.85 ? C13 XOU 301 B 1 
HETATM 18 C C14 XOU . . . M 2 38.466 -34.702 5.457 1 44.4 ? C14 XOU 301 B 1 
HETATM 19 C C15 XOU . . . M 2 37.53 -35.701 6.11 1 45.63 ? C15 XOU 301 B 1 
HETATM 20 C C16 XOU . . . M 2 36.147 -35.527 6.083 1 45.69 ? C16 XOU 301 B 1 
HETATM 21 C C17 XOU . . . M 2 35.302 -36.477 6.63 1 45.7 ? C17 XOU 301 B 1 
HETATM 22 C C18 XOU . . . M 2 35.802 -37.628 7.226 1 46.13 ? C18 XOU 301 B 1 
HETATM 23 C C19 XOU . . . M 2 34.884 -38.624 7.894 1 47.22 ? C19 XOU 301 B 1 
HETATM 24 C C20 XOU . . . M 2 37.181 -37.802 7.241 1 42.19 ? C20 XOU 301 B 1 
HETATM 25 C C21 XOU . . . M 2 38.033 -36.852 6.705 1 42.25 ? C21 XOU 301 B 1 
HETATM 26 C C22 XOU . . . M 2 37.398 -32.523 6.017 1 46.43 ? C22 XOU 301 B 1 
HETATM 27 C C23 XOU . . . M 2 35.959 -30.604 6.558 1 47.92 ? C23 XOU 301 B 1 
HETATM 28 C C24 XOU . . . M 2 34.827 -29.788 5.919 1 50.88 ? C24 XOU 301 B 1 
HETATM 29 C C25 XOU . . . M 2 37.027 -29.662 7.122 1 47.55 ? C25 XOU 301 B 1 
HETATM 30 C C26 XOU . . . M 2 37.406 -27.426 5.423 1 45.19 ? C26 XOU 301 B 1 
HETATM 31 C C27 XOU . . . M 2 38.234 -26.522 4.544 1 46.84 ? C27 XOU 301 B 1 
HETATM 32 C C28 XOU . . . M 2 39.408 -26.982 3.949 1 44.94 ? C28 XOU 301 B 1 
HETATM 33 C C29 XOU . . . M 2 40.104 -26.188 3.046 1 48.04 ? C29 XOU 301 B 1 
HETATM 34 C C30 XOU . . . M 2 39.632 -24.928 2.717 1 47.08 ? C30 XOU 301 B 1 
HETATM 35 C C31 XOU . . . M 2 38.476 -24.454 3.31 1 46.66 ? C31 XOU 301 B 1 
HETATM 36 C C32 XOU . . . M 2 37.79 -25.238 4.229 1 47.77 ? C32 XOU 301 B 1 
HETATM 37 O O3 XOU . . . M 2 34.586 -29.967 4.702 1 49.47 ? O3 XOU 301 B 1 
HETATM 38 O O4 XOU . . . M 2 34.214 -29.002 6.675 1 52.88 -1 O4 XOU 301 B 1 
HETATM 39 S S1 XOU . . . M 2 38.23 -28.961 5.959 1 49.67 ? S1 XOU 301 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#