data_6UW2 # _model_server_result.job_id hHzjQbn1-hR36odJYDE0pQ _model_server_result.datetime_utc '2024-12-16 13:01:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":501}' # _entry.id 6UW2 # _exptl.entry_id 6UW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UW2 _cell.length_a 117.98 _cell.length_b 177.22 _cell.length_c 181.52 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,V 1 1 B,I,J,K,W 2 1 C,L,M,N,X 3 1 D,O,P,Y 4 1 E,Q,R,Z 5 1 F,S,T,U,AA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 L N N ? 2 O N N ? 2 Q N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 434 1_555 G FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 G FE HEM . A HEM 501 1_555 H NAN CL6 . A CL6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 B SG CYS 402 B CYS 434 1_555 I FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 I FE HEM . B HEM 501 1_555 J NAN CL6 . B CL6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 C SG CYS 402 C CYS 434 1_555 L FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 L FE HEM . C HEM 501 1_555 M NAN CL6 . C CL6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc7 D SG CYS 402 D CYS 434 1_555 O FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 O FE HEM . D HEM 501 1_555 P NAN CL6 . D CL6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 E SG CYS 402 E CYS 434 1_555 Q FE HEM . E HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc10 Q FE HEM . E HEM 501 1_555 R NAN CL6 . E CL6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc11 F SG CYS 402 F CYS 434 1_555 S FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc12 S FE HEM . F HEM 501 1_555 T NAN CL6 . F CL6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 182 n n CHA C4D HEM doub 183 n n CHA HHA HEM sing 184 n n CHB C4A HEM sing 185 n n CHB C1B HEM doub 186 n n CHB HHB HEM sing 187 n n CHC C4B HEM sing 188 n n CHC C1C HEM doub 189 n n CHC HHC HEM sing 190 n n CHD C4C HEM doub 191 n n CHD C1D HEM sing 192 n n CHD HHD HEM sing 193 n n C1A C2A HEM doub 194 n y C1A NA HEM sing 195 n y C2A C3A HEM sing 196 n y C2A CAA HEM sing 197 n n C3A C4A HEM doub 198 n y C3A CMA HEM sing 199 n n C4A NA HEM sing 200 n y CMA HMA HEM sing 201 n n CMA HMAA HEM sing 202 n n CMA HMAB HEM sing 203 n n CAA CBA HEM sing 204 n n CAA HAA HEM sing 205 n n CAA HAAA HEM sing 206 n n CBA CGA HEM sing 207 n n CBA HBA HEM sing 208 n n CBA HBAA HEM sing 209 n n CGA O1A HEM doub 210 n n CGA O2A HEM sing 211 n n C1B C2B HEM sing 212 n n C1B NB HEM sing 213 n n C2B C3B HEM doub 214 n n C2B CMB HEM sing 215 n n C3B C4B HEM sing 216 n n C3B CAB HEM sing 217 n n C4B NB HEM doub 218 n n CMB HMB HEM sing 219 n n CMB HMBA HEM sing 220 n n CMB HMBB HEM sing 221 n n CAB CBB HEM doub 222 n n CAB HAB HEM sing 223 n n CBB HBB HEM sing 224 n n CBB HBBA HEM sing 225 n n C1C C2C HEM sing 226 n y C1C NC HEM sing 227 n y C2C C3C HEM doub 228 n y C2C CMC HEM sing 229 n n C3C C4C HEM sing 230 n y C3C CAC HEM sing 231 n n C4C NC HEM sing 232 n y CMC HMC HEM sing 233 n n CMC HMCA HEM sing 234 n n CMC HMCB HEM sing 235 n n CAC CBC HEM doub 236 n n CAC HAC HEM sing 237 n n CBC HBC HEM sing 238 n n CBC HBCA HEM sing 239 n n C1D C2D HEM sing 240 n n C1D ND HEM doub 241 n n C2D C3D HEM doub 242 n n C2D CMD HEM sing 243 n n C3D C4D HEM sing 244 n n C3D CAD HEM sing 245 n n C4D ND HEM sing 246 n n CMD HMD HEM sing 247 n n CMD HMDA HEM sing 248 n n CMD HMDB HEM sing 249 n n CAD CBD HEM sing 250 n n CAD HAD HEM sing 251 n n CAD HADA HEM sing 252 n n CBD CGD HEM sing 253 n n CBD HBD HEM sing 254 n n CBD HBDA HEM sing 255 n n CGD O1D HEM doub 256 n n CGD O2D HEM sing 257 n n O2A H2A HEM sing 258 n n O2D H2D HEM sing 259 n n FE NA HEM sing 260 n n FE NB HEM sing 261 n n FE NC HEM sing 262 n n FE ND HEM sing 263 n n # _atom_sites.entry_id 6UW2 _atom_sites.fract_transf_matrix[1][1] 0.008476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HEM A 1 501 500 HEM HEM . H 3 CL6 A 1 502 510 CL6 CL6 . I 2 HEM B 1 501 500 HEM HEM . J 3 CL6 B 1 502 510 CL6 CL6 . K 4 GAI B 1 503 3 GAI GAI . L 2 HEM C 1 501 500 HEM HEM . M 3 CL6 C 1 502 510 CL6 CL6 . N 4 GAI C 1 503 2 GAI GAI . O 2 HEM D 1 501 500 HEM HEM . P 3 CL6 D 1 502 510 CL6 CL6 . Q 2 HEM E 1 501 500 HEM HEM . R 3 CL6 E 1 502 510 CL6 CL6 . S 2 HEM F 1 501 500 HEM HEM . T 3 CL6 F 1 502 510 CL6 CL6 . U 4 GAI F 1 503 6 GAI GAI . V 5 HOH A 1 601 13 HOH HOH . V 5 HOH A 2 602 11 HOH HOH . V 5 HOH A 3 603 25 HOH HOH . V 5 HOH A 4 604 26 HOH HOH . W 5 HOH B 1 601 1 HOH HOH . W 5 HOH B 2 602 30 HOH HOH . W 5 HOH B 3 603 29 HOH HOH . W 5 HOH B 4 604 27 HOH HOH . W 5 HOH B 5 605 31 HOH HOH . W 5 HOH B 6 606 28 HOH HOH . W 5 HOH B 7 607 35 HOH HOH . W 5 HOH B 8 608 32 HOH HOH . W 5 HOH B 9 609 33 HOH HOH . W 5 HOH B 10 610 23 HOH HOH . X 5 HOH C 1 601 18 HOH HOH . X 5 HOH C 2 602 37 HOH HOH . X 5 HOH C 3 603 36 HOH HOH . X 5 HOH C 4 604 42 HOH HOH . X 5 HOH C 5 605 41 HOH HOH . X 5 HOH C 6 606 38 HOH HOH . X 5 HOH C 7 607 43 HOH HOH . X 5 HOH C 8 608 7 HOH HOH . X 5 HOH C 9 609 51 HOH HOH . X 5 HOH C 10 610 44 HOH HOH . X 5 HOH C 11 611 39 HOH HOH . X 5 HOH C 12 612 40 HOH HOH . Y 5 HOH D 1 601 17 HOH HOH . Y 5 HOH D 2 602 54 HOH HOH . Y 5 HOH D 3 603 52 HOH HOH . Y 5 HOH D 4 604 50 HOH HOH . Y 5 HOH D 5 605 6 HOH HOH . Y 5 HOH D 6 606 45 HOH HOH . Y 5 HOH D 7 607 53 HOH HOH . Y 5 HOH D 8 608 48 HOH HOH . Y 5 HOH D 9 609 47 HOH HOH . Z 5 HOH E 1 601 56 HOH HOH . Z 5 HOH E 2 602 55 HOH HOH . Z 5 HOH E 3 603 46 HOH HOH . Z 5 HOH E 4 604 34 HOH HOH . AA 5 HOH F 1 601 61 HOH HOH . AA 5 HOH F 2 602 62 HOH HOH . AA 5 HOH F 3 603 59 HOH HOH . AA 5 HOH F 4 604 60 HOH HOH . AA 5 HOH F 5 605 58 HOH HOH . AA 5 HOH F 6 606 63 HOH HOH . AA 5 HOH F 7 607 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . O 2 23.298 -71.412 -36.648 1 51.01 ? CHA HEM 501 D 1 HETATM 2 C CHB HEM . . . O 2 18.786 -70.537 -38.01 1 52.42 ? CHB HEM 501 D 1 HETATM 3 C CHC HEM . . . O 2 17.151 -72.517 -33.906 1 54.15 ? CHC HEM 501 D 1 HETATM 4 C CHD HEM . . . O 2 21.702 -72.859 -32.346 1 60.57 ? CHD HEM 501 D 1 HETATM 5 C C1A HEM . . . O 2 22.214 -71.043 -37.38 1 50.34 ? C1A HEM 501 D 1 HETATM 6 C C2A HEM . . . O 2 22.258 -70.5 -38.689 1 53.32 ? C2A HEM 501 D 1 HETATM 7 C C3A HEM . . . O 2 20.971 -70.261 -39.048 1 55.07 ? C3A HEM 501 D 1 HETATM 8 C C4A HEM . . . O 2 20.154 -70.626 -37.978 1 51.72 ? C4A HEM 501 D 1 HETATM 9 C CMA HEM . . . O 2 20.435 -69.704 -40.347 1 60 ? CMA HEM 501 D 1 HETATM 10 C CAA HEM . . . O 2 23.454 -70.278 -39.6 1 54.22 ? CAA HEM 501 D 1 HETATM 11 C CBA HEM . . . O 2 24.68 -69.573 -39.002 1 54.2 ? CBA HEM 501 D 1 HETATM 12 C CGA HEM . . . O 2 25.493 -68.918 -40.084 1 50.84 ? CGA HEM 501 D 1 HETATM 13 O O1A HEM . . . O 2 26.096 -67.848 -39.859 1 52.35 ? O1A HEM 501 D 1 HETATM 14 O O2A HEM . . . O 2 25.583 -69.443 -41.206 1 45.72 ? O2A HEM 501 D 1 HETATM 15 C C1B HEM . . . O 2 17.934 -71.035 -37.006 1 54.52 ? C1B HEM 501 D 1 HETATM 16 C C2B HEM . . . O 2 16.512 -71.052 -37.141 1 55.74 ? C2B HEM 501 D 1 HETATM 17 C C3B HEM . . . O 2 16.019 -71.605 -35.991 1 56.09 ? C3B HEM 501 D 1 HETATM 18 C C4B HEM . . . O 2 17.216 -71.942 -35.168 1 51.86 ? C4B HEM 501 D 1 HETATM 19 C CMB HEM . . . O 2 15.721 -70.547 -38.329 1 56.31 ? CMB HEM 501 D 1 HETATM 20 C CAB HEM . . . O 2 14.611 -71.887 -35.602 1 60.42 ? CAB HEM 501 D 1 HETATM 21 C CBB HEM . . . O 2 13.531 -71.759 -36.373 1 61.66 ? CBB HEM 501 D 1 HETATM 22 C C1C HEM . . . O 2 18.24 -72.782 -33.074 1 57 ? C1C HEM 501 D 1 HETATM 23 C C2C HEM . . . O 2 18.201 -73.262 -31.734 1 59.11 ? C2C HEM 501 D 1 HETATM 24 C C3C HEM . . . O 2 19.512 -73.363 -31.273 1 60.22 ? C3C HEM 501 D 1 HETATM 25 C C4C HEM . . . O 2 20.334 -72.93 -32.366 1 61.21 ? C4C HEM 501 D 1 HETATM 26 C CMC HEM . . . O 2 16.959 -73.627 -30.953 1 60.61 ? CMC HEM 501 D 1 HETATM 27 C CAC HEM . . . O 2 20.036 -73.79 -29.945 1 62.21 ? CAC HEM 501 D 1 HETATM 28 C CBC HEM . . . O 2 19.326 -74.059 -28.847 1 65.51 ? CBC HEM 501 D 1 HETATM 29 C C1D HEM . . . O 2 22.481 -72.497 -33.439 1 56.26 ? C1D HEM 501 D 1 HETATM 30 C C2D HEM . . . O 2 23.945 -72.584 -33.364 1 60.31 ? C2D HEM 501 D 1 HETATM 31 C C3D HEM . . . O 2 24.426 -72.192 -34.55 1 56.95 ? C3D HEM 501 D 1 HETATM 32 C C4D HEM . . . O 2 23.217 -71.877 -35.352 1 52.4 ? C4D HEM 501 D 1 HETATM 33 C CMD HEM . . . O 2 24.823 -73.01 -32.193 1 63.6 ? CMD HEM 501 D 1 HETATM 34 C CAD HEM . . . O 2 25.941 -72.167 -34.775 1 56.29 ? CAD HEM 501 D 1 HETATM 35 C CBD HEM . . . O 2 26.51 -71.695 -36.112 1 58.73 ? CBD HEM 501 D 1 HETATM 36 C CGD HEM . . . O 2 28.01 -71.858 -36.098 1 64.29 ? CGD HEM 501 D 1 HETATM 37 O O1D HEM . . . O 2 28.773 -70.911 -36.405 1 63.57 ? O1D HEM 501 D 1 HETATM 38 O O2D HEM . . . O 2 28.512 -72.961 -35.792 1 72.51 ? O2D HEM 501 D 1 HETATM 39 N NA HEM . . . O 2 20.915 -71.09 -36.95 1 51.34 ? NA HEM 501 D 1 HETATM 40 N NB HEM . . . O 2 18.29 -71.559 -35.83 1 51.61 ? NB HEM 501 D 1 HETATM 41 N NC HEM . . . O 2 19.535 -72.566 -33.414 1 56.7 ? NC HEM 501 D 1 HETATM 42 N ND HEM . . . O 2 22.08 -72.085 -34.64 1 53 ? ND HEM 501 D 1 HETATM 43 FE FE HEM . . . O 2 20.272 -71.794 -35.192 1 51.88 ? FE HEM 501 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 628 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 43 #