data_6UW4 # _model_server_result.job_id 5zBApnGQ3X9cyA9zp-DFjA _model_server_result.datetime_utc '2024-11-01 03:32:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":805}' # _entry.id 6UW4 # _exptl.entry_id 6UW4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UW4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 638 A GLY 638 1_555 J NA NA . A NA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc2 J NA NA . A NA 806 1_555 B O GLY 638 B GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc3 J NA NA . A NA 806 1_555 C O GLY 638 C GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 J NA NA . A NA 806 1_555 D O GLY 638 D GLY 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 6UW4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6OU A 1 801 801 6OU 6OU . F 2 6OU A 1 802 802 6OU 6OU . G 2 6OU A 1 803 803 6OU 6OU . H 2 6OU A 1 804 804 6OU 6OU . I 2 6OU A 1 805 805 6OU 6OU . J 3 NA A 1 806 806 NA NA . K 2 6OU B 1 801 801 6OU 6OU . L 2 6OU B 1 802 802 6OU 6OU . M 2 6OU B 1 803 803 6OU 6OU . N 2 6OU B 1 804 804 6OU 6OU . O 2 6OU B 1 805 805 6OU 6OU . P 2 6OU C 1 801 801 6OU 6OU . Q 2 6OU C 1 802 802 6OU 6OU . R 2 6OU C 1 803 803 6OU 6OU . S 2 6OU C 1 804 804 6OU 6OU . T 2 6OU C 1 805 805 6OU 6OU . U 2 6OU D 1 801 801 6OU 6OU . V 2 6OU D 1 802 802 6OU 6OU . W 2 6OU D 1 803 803 6OU 6OU . X 2 6OU D 1 804 804 6OU 6OU . Y 2 6OU D 1 805 805 6OU 6OU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6OU . . . Y 2 120.703 158.95 127.155 1 56.17 ? C10 6OU 805 D 1 HETATM 2 C C11 6OU . . . Y 2 120.962 157.698 128.12 1 56.17 ? C11 6OU 805 D 1 HETATM 3 C C12 6OU . . . Y 2 120.135 156.433 127.588 1 56.17 ? C12 6OU 805 D 1 HETATM 4 C C13 6OU . . . Y 2 119.724 155.496 128.821 1 56.17 ? C13 6OU 805 D 1 HETATM 5 C C14 6OU . . . Y 2 120.997 155.296 129.771 1 56.17 ? C14 6OU 805 D 1 HETATM 6 C C15 6OU . . . Y 2 120.543 155.295 131.305 1 56.17 ? C15 6OU 805 D 1 HETATM 7 C C16 6OU . . . Y 2 121.732 155.942 132.157 1 56.17 ? C16 6OU 805 D 1 HETATM 8 O O17 6OU . . . Y 2 121.698 157.151 132.445 1 56.17 ? O17 6OU 805 D 1 HETATM 9 O O18 6OU . . . Y 2 122.864 155.113 132.585 1 56.17 ? O18 6OU 805 D 1 HETATM 10 C C19 6OU . . . Y 2 123.048 155.053 134.038 1 56.17 ? C19 6OU 805 D 1 HETATM 11 C C20 6OU . . . Y 2 124.394 155.828 134.431 1 56.17 ? C20 6OU 805 D 1 HETATM 12 C C21 6OU . . . Y 2 124.11 156.766 135.701 1 56.17 ? C21 6OU 805 D 1 HETATM 13 O O22 6OU . . . Y 2 123.87 155.936 136.89 1 56.17 ? O22 6OU 805 D 1 HETATM 14 P P23 6OU . . . Y 2 125.185 154.99 137.493 1 56.17 ? P23 6OU 805 D 1 HETATM 15 O O24 6OU . . . Y 2 125.014 154.779 139.053 1 56.17 ? O24 6OU 805 D 1 HETATM 16 O O25 6OU . . . Y 2 125.211 153.579 136.772 1 56.17 ? O25 6OU 805 D 1 HETATM 17 O O26 6OU . . . Y 2 126.662 155.831 137.187 1 56.17 ? O26 6OU 805 D 1 HETATM 18 C C27 6OU . . . Y 2 127.862 155.399 137.911 1 56.17 ? C27 6OU 805 D 1 HETATM 19 C C28 6OU . . . Y 2 128.359 156.579 138.876 1 56.17 ? C28 6OU 805 D 1 HETATM 20 N N29 6OU . . . Y 2 129.876 156.686 138.808 1 56.17 ? N29 6OU 805 D 1 HETATM 21 O O30 6OU . . . Y 2 124.825 156.663 133.301 1 56.17 ? O30 6OU 805 D 1 HETATM 22 C C31 6OU . . . Y 2 125.872 156.056 132.473 1 56.17 ? C31 6OU 805 D 1 HETATM 23 O O32 6OU . . . Y 2 126.207 154.879 132.682 1 56.17 ? O32 6OU 805 D 1 HETATM 24 C C33 6OU . . . Y 2 126.575 156.901 131.305 1 56.17 ? C33 6OU 805 D 1 HETATM 25 C C34 6OU . . . Y 2 125.473 157.696 130.457 1 56.17 ? C34 6OU 805 D 1 HETATM 26 C C35 6OU . . . Y 2 126.023 157.946 128.974 1 56.17 ? C35 6OU 805 D 1 HETATM 27 C C36 6OU . . . Y 2 124.807 157.831 127.938 1 56.17 ? C36 6OU 805 D 1 HETATM 28 C C37 6OU . . . Y 2 125.342 158.016 126.437 1 56.17 ? C37 6OU 805 D 1 HETATM 29 C C38 6OU . . . Y 2 124.648 156.936 125.476 1 56.17 ? C38 6OU 805 D 1 HETATM 30 C C39 6OU . . . Y 2 125.414 156.91 124.069 1 56.17 ? C39 6OU 805 D 1 HETATM 31 C C40 6OU . . . Y 2 124.866 155.708 123.16 1 56.17 ? C40 6OU 805 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #