data_6UX0
#
_model_server_result.job_id            4AAgJwMnhXM8Mkx-VPdbaw 
_model_server_result.datetime_utc      '2024-10-14 03:17:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ux0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    6UX0 
#
_exptl.entry_id    6UX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92.61 
_cell.angle_beta          96.2 
_cell.angle_gamma         120.09 
_cell.entry_id            6UX0 
_cell.length_a            99.45 
_cell.length_b            99.06 
_cell.length_c            108.71 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H 1 1 
B,I,J,K 2 1 
C,L,M 3 1 
D,N,O 4 1 
E,P,Q,U 5 1 
F,R,S,T 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 402 A CYS 434 1_555 G FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc2 G FE HEM . A HEM 501 1_555 H N4 QKM . A QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 B SG CYS 402 B CYS 434 1_555 I FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc4 I FE HEM . B HEM 501 1_555 J N4 QKM . B QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc5 C SG CYS 402 C CYS 434 1_555 L FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc6 L FE HEM . C HEM 501 1_555 M N4 QKM . C QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc7 D SG CYS 402 D CYS 434 1_555 N FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc8 N FE HEM . D HEM 501 1_555 O N4 QKM . D QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc9 E SG CYS 402 E CYS 434 1_555 P FE HEM . E HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc10 P FE HEM . E HEM 501 1_555 Q N4 QKM . E QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc11 F SG CYS 402 F CYS 434 1_555 R FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc12 R FE HEM . F HEM 501 1_555 S N4 QKM . F QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6UX0 
_atom_sites.fract_transf_matrix[1][1]    0.010055 
_atom_sites.fract_transf_matrix[1][2]    0.005826 
_atom_sites.fract_transf_matrix[1][3]    0.001778 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011667 
_atom_sites.fract_transf_matrix[2][3]    0.00136 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 HEM A 1 501 500 HEM HEM . 
H 3 QKM A 1 502 510 QKM ISV . 
I 2 HEM B 1 501 500 HEM HEM . 
J 3 QKM B 1 502 510 QKM ISV . 
K 4 FE B 1 503 2 FE FE . 
L 2 HEM C 1 501 500 HEM HEM . 
M 3 QKM C 1 502 510 QKM ISV . 
N 2 HEM D 1 501 500 HEM HEM . 
O 3 QKM D 1 502 510 QKM ISV . 
P 2 HEM E 1 501 500 HEM HEM . 
Q 3 QKM E 1 502 510 QKM ISV . 
R 2 HEM F 1 501 500 HEM HEM . 
S 3 QKM F 1 502 510 QKM ISV . 
T 4 FE F 1 503 1 FE FE . 
U 5 HOH E 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . L 2 -45.73 -3.573 47.807 1 60.3 ? CHA HEM 501 C 1 
HETATM 2 C CHB HEM . . . L 2 -45.029 -6.955 44.422 1 64.04 ? CHB HEM 501 C 1 
HETATM 3 C CHC HEM . . . L 2 -47.693 -4.302 41.425 1 62.75 ? CHC HEM 501 C 1 
HETATM 4 C CHD HEM . . . L 2 -47.755 -0.625 44.52 1 59.17 ? CHD HEM 501 C 1 
HETATM 5 C C1A HEM . . . L 2 -45.364 -4.719 47.162 1 61.74 ? C1A HEM 501 C 1 
HETATM 6 C C2A HEM . . . L 2 -44.631 -5.753 47.753 1 64.77 ? C2A HEM 501 C 1 
HETATM 7 C C3A HEM . . . L 2 -44.413 -6.688 46.799 1 64.92 ? C3A HEM 501 C 1 
HETATM 8 C C4A HEM . . . L 2 -45.024 -6.261 45.617 1 63.73 ? C4A HEM 501 C 1 
HETATM 9 C CMA HEM . . . L 2 -43.672 -7.987 46.944 1 71 ? CMA HEM 501 C 1 
HETATM 10 C CAA HEM . . . L 2 -44.125 -5.781 49.171 1 68.67 ? CAA HEM 501 C 1 
HETATM 11 C CBA HEM . . . L 2 -42.725 -5.183 48.992 1 74.63 ? CBA HEM 501 C 1 
HETATM 12 C CGA HEM . . . L 2 -42.118 -4.65 50.26 1 78.75 ? CGA HEM 501 C 1 
HETATM 13 O O1A HEM . . . L 2 -41.457 -3.569 50.242 1 70.92 ? O1A HEM 501 C 1 
HETATM 14 O O2A HEM . . . L 2 -42.27 -5.313 51.312 1 81.43 ? O2A HEM 501 C 1 
HETATM 15 C C1B HEM . . . L 2 -45.735 -6.518 43.276 1 69.87 ? C1B HEM 501 C 1 
HETATM 16 C C2B HEM . . . L 2 -45.924 -7.282 42.071 1 70.44 ? C2B HEM 501 C 1 
HETATM 17 C C3B HEM . . . L 2 -46.688 -6.55 41.203 1 65.26 ? C3B HEM 501 C 1 
HETATM 18 C C4B HEM . . . L 2 -46.957 -5.317 41.96 1 60.52 ? C4B HEM 501 C 1 
HETATM 19 C CMB HEM . . . L 2 -45.374 -8.653 41.809 1 79.63 ? CMB HEM 501 C 1 
HETATM 20 C CAB HEM . . . L 2 -47.222 -6.825 39.831 1 68.05 ? CAB HEM 501 C 1 
HETATM 21 C CBB HEM . . . L 2 -47.171 -7.963 39.16 1 74.9 ? CBB HEM 501 C 1 
HETATM 22 C C1C HEM . . . L 2 -47.937 -3.07 41.975 1 64.7 ? C1C HEM 501 C 1 
HETATM 23 C C2C HEM . . . L 2 -48.589 -2.029 41.299 1 67.92 ? C2C HEM 501 C 1 
HETATM 24 C C3C HEM . . . L 2 -48.621 -0.921 42.164 1 65.81 ? C3C HEM 501 C 1 
HETATM 25 C C4C HEM . . . L 2 -47.956 -1.354 43.379 1 61.36 ? C4C HEM 501 C 1 
HETATM 26 C CMC HEM . . . L 2 -49.161 -2.158 39.898 1 66.88 ? CMC HEM 501 C 1 
HETATM 27 C CAC HEM . . . L 2 -49.276 0.408 41.905 1 68.19 ? CAC HEM 501 C 1 
HETATM 28 C CBC HEM . . . L 2 -50.055 0.746 40.84 1 65.32 ? CBC HEM 501 C 1 
HETATM 29 C C1D HEM . . . L 2 -47.2 -1.206 45.684 1 59.68 ? C1D HEM 501 C 1 
HETATM 30 C C2D HEM . . . L 2 -47.149 -0.454 46.944 1 58.59 ? C2D HEM 501 C 1 
HETATM 31 C C3D HEM . . . L 2 -46.615 -1.242 47.881 1 56.14 ? C3D HEM 501 C 1 
HETATM 32 C C4D HEM . . . L 2 -46.326 -2.506 47.177 1 56.68 ? C4D HEM 501 C 1 
HETATM 33 C CMD HEM . . . L 2 -47.644 0.959 47.164 1 60.98 ? CMD HEM 501 C 1 
HETATM 34 C CAD HEM . . . L 2 -46.439 -0.719 49.296 1 61.01 ? CAD HEM 501 C 1 
HETATM 35 C CBD HEM . . . L 2 -45.705 -1.494 50.384 1 69.81 ? CBD HEM 501 C 1 
HETATM 36 C CGD HEM . . . L 2 -45.585 -0.577 51.601 1 81.63 ? CGD HEM 501 C 1 
HETATM 37 O O1D HEM . . . L 2 -44.489 -0.078 52.007 1 69.1 ? O1D HEM 501 C 1 
HETATM 38 O O2D HEM . . . L 2 -46.633 -0.316 52.243 1 99.61 ? O2D HEM 501 C 1 
HETATM 39 N NA HEM . . . L 2 -45.564 -5.03 45.848 1 64.05 ? NA HEM 501 C 1 
HETATM 40 N NB HEM . . . L 2 -46.373 -5.359 43.132 1 62.23 ? NB HEM 501 C 1 
HETATM 41 N NC HEM . . . L 2 -47.531 -2.655 43.196 1 63.77 ? NC HEM 501 C 1 
HETATM 42 N ND HEM . . . L 2 -46.683 -2.451 45.872 1 60.98 ? ND HEM 501 C 1 
HETATM 43 FE FE HEM . . . L 2 -46.506 -3.844 44.56 1 61.11 ? FE HEM 501 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#