data_6UX0
#
_model_server_result.job_id            Grz9dS4P1dV9jgRDfzPQ5w 
_model_server_result.datetime_utc      '2024-10-14 03:13:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ux0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":501}' 
#
_entry.id    6UX0 
#
_exptl.entry_id    6UX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92.61 
_cell.angle_beta          96.2 
_cell.angle_gamma         120.09 
_cell.entry_id            6UX0 
_cell.length_a            99.45 
_cell.length_b            99.06 
_cell.length_c            108.71 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H 1 1 
B,I,J,K 2 1 
C,L,M 3 1 
D,N,O 4 1 
E,P,Q,U 5 1 
F,R,S,T 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 402 A CYS 434 1_555 G FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc2 G FE HEM . A HEM 501 1_555 H N4 QKM . A QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 B SG CYS 402 B CYS 434 1_555 I FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc4 I FE HEM . B HEM 501 1_555 J N4 QKM . B QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc5 C SG CYS 402 C CYS 434 1_555 L FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc6 L FE HEM . C HEM 501 1_555 M N4 QKM . C QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc7 D SG CYS 402 D CYS 434 1_555 N FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc8 N FE HEM . D HEM 501 1_555 O N4 QKM . D QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc9 E SG CYS 402 E CYS 434 1_555 P FE HEM . E HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc10 P FE HEM . E HEM 501 1_555 Q N4 QKM . E QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc11 F SG CYS 402 F CYS 434 1_555 R FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc12 R FE HEM . F HEM 501 1_555 S N4 QKM . F QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6UX0 
_atom_sites.fract_transf_matrix[1][1]    0.010055 
_atom_sites.fract_transf_matrix[1][2]    0.005826 
_atom_sites.fract_transf_matrix[1][3]    0.001778 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011667 
_atom_sites.fract_transf_matrix[2][3]    0.00136 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 HEM A 1 501 500 HEM HEM . 
H 3 QKM A 1 502 510 QKM ISV . 
I 2 HEM B 1 501 500 HEM HEM . 
J 3 QKM B 1 502 510 QKM ISV . 
K 4 FE B 1 503 2 FE FE . 
L 2 HEM C 1 501 500 HEM HEM . 
M 3 QKM C 1 502 510 QKM ISV . 
N 2 HEM D 1 501 500 HEM HEM . 
O 3 QKM D 1 502 510 QKM ISV . 
P 2 HEM E 1 501 500 HEM HEM . 
Q 3 QKM E 1 502 510 QKM ISV . 
R 2 HEM F 1 501 500 HEM HEM . 
S 3 QKM F 1 502 510 QKM ISV . 
T 4 FE F 1 503 1 FE FE . 
U 5 HOH E 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . P 2 -71.893 15.156 -21.109 1 68.54 ? CHA HEM 501 E 1 
HETATM 2 C CHB HEM . . . P 2 -72.277 13.014 -16.838 1 64.38 ? CHB HEM 501 E 1 
HETATM 3 C CHC HEM . . . P 2 -69.804 16.557 -14.725 1 65.86 ? CHC HEM 501 E 1 
HETATM 4 C CHD HEM . . . P 2 -69.574 18.833 -18.98 1 69.63 ? CHD HEM 501 E 1 
HETATM 5 C C1A HEM . . . P 2 -72.201 14.265 -20.125 1 65.28 ? C1A HEM 501 E 1 
HETATM 6 C C2A HEM . . . P 2 -72.927 13.085 -20.37 1 66.14 ? C2A HEM 501 E 1 
HETATM 7 C C3A HEM . . . P 2 -73.02 12.49 -19.149 1 66.29 ? C3A HEM 501 E 1 
HETATM 8 C C4A HEM . . . P 2 -72.383 13.297 -18.183 1 61.15 ? C4A HEM 501 E 1 
HETATM 9 C CMA HEM . . . P 2 -73.7 11.18 -18.861 1 69.66 ? CMA HEM 501 E 1 
HETATM 10 C CAA HEM . . . P 2 -73.461 12.597 -21.721 1 62.93 ? CAA HEM 501 E 1 
HETATM 11 C CBA HEM . . . P 2 -74.714 13.419 -22.084 1 68 ? CBA HEM 501 E 1 
HETATM 12 C CGA HEM . . . P 2 -75.391 13.209 -23.452 1 72.54 ? CGA HEM 501 E 1 
HETATM 13 O O1A HEM . . . P 2 -75.91 14.216 -24.025 1 73.11 ? O1A HEM 501 E 1 
HETATM 14 O O2A HEM . . . P 2 -75.5 12.087 -24.033 1 60.42 ? O2A HEM 501 E 1 
HETATM 15 C C1B HEM . . . P 2 -71.616 13.792 -15.863 1 61.98 ? C1B HEM 501 E 1 
HETATM 16 C C2B HEM . . . P 2 -71.485 13.433 -14.48 1 61.91 ? C2B HEM 501 E 1 
HETATM 17 C C3B HEM . . . P 2 -70.796 14.429 -13.858 1 61.09 ? C3B HEM 501 E 1 
HETATM 18 C C4B HEM . . . P 2 -70.516 15.39 -14.935 1 60.67 ? C4B HEM 501 E 1 
HETATM 19 C CMB HEM . . . P 2 -72.039 12.18 -13.83 1 62.72 ? CMB HEM 501 E 1 
HETATM 20 C CAB HEM . . . P 2 -70.321 14.568 -12.453 1 65.32 ? CAB HEM 501 E 1 
HETATM 21 C CBB HEM . . . P 2 -70.261 13.602 -11.544 1 67.24 ? CBB HEM 501 E 1 
HETATM 22 C C1C HEM . . . P 2 -69.501 17.519 -15.681 1 69.47 ? C1C HEM 501 E 1 
HETATM 23 C C2C HEM . . . P 2 -68.818 18.746 -15.439 1 75.51 ? C2C HEM 501 E 1 
HETATM 24 C C3C HEM . . . P 2 -68.754 19.423 -16.669 1 73.74 ? C3C HEM 501 E 1 
HETATM 25 C C4C HEM . . . P 2 -69.413 18.567 -17.634 1 71.91 ? C4C HEM 501 E 1 
HETATM 26 C CMC HEM . . . P 2 -68.254 19.224 -14.097 1 76.08 ? CMC HEM 501 E 1 
HETATM 27 C CAC HEM . . . P 2 -68.132 20.753 -16.976 1 72.86 ? CAC HEM 501 E 1 
HETATM 28 C CBC HEM . . . P 2 -67.556 21.597 -16.102 1 76.62 ? CBC HEM 501 E 1 
HETATM 29 C C1D HEM . . . P 2 -70.192 17.956 -19.871 1 65.43 ? C1D HEM 501 E 1 
HETATM 30 C C2D HEM . . . P 2 -70.305 18.282 -21.294 1 69.42 ? C2D HEM 501 E 1 
HETATM 31 C C3D HEM . . . P 2 -70.923 17.266 -21.892 1 72 ? C3D HEM 501 E 1 
HETATM 32 C C4D HEM . . . P 2 -71.211 16.324 -20.817 1 70.07 ? C4D HEM 501 E 1 
HETATM 33 C CMD HEM . . . P 2 -69.821 19.509 -22.02 1 74.1 ? CMD HEM 501 E 1 
HETATM 34 C CAD HEM . . . P 2 -71.317 17.19 -23.352 1 77.62 ? CAD HEM 501 E 1 
HETATM 35 C CBD HEM . . . P 2 -70.324 16.55 -24.317 1 84.33 ? CBD HEM 501 E 1 
HETATM 36 C CGD HEM . . . P 2 -70.777 16.867 -25.737 1 93.67 ? CGD HEM 501 E 1 
HETATM 37 O O1D HEM . . . P 2 -71.981 17.158 -25.975 1 91.51 ? O1D HEM 501 E 1 
HETATM 38 O O2D HEM . . . P 2 -69.959 16.841 -26.696 1 99.44 ? O2D HEM 501 E 1 
HETATM 39 N NA HEM . . . P 2 -71.908 14.399 -18.782 1 62.34 ? NA HEM 501 E 1 
HETATM 40 N NB HEM . . . P 2 -71.045 14.948 -16.057 1 60.5 ? NB HEM 501 E 1 
HETATM 41 N NC HEM . . . P 2 -69.875 17.453 -16.987 1 66.84 ? NC HEM 501 E 1 
HETATM 42 N ND HEM . . . P 2 -70.751 16.763 -19.617 1 67.93 ? ND HEM 501 E 1 
HETATM 43 FE FE HEM . . . P 2 -70.891 15.885 -17.916 1 71.07 ? FE HEM 501 E 1 
#
_model_server_stats.io_time_ms              101 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#