data_6UX0
#
_model_server_result.job_id            AZE0zPyq50ELySEEddDRBQ 
_model_server_result.datetime_utc      '2024-12-12 16:55:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ux0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":501}' 
#
_entry.id    6UX0 
#
_exptl.entry_id    6UX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92.61 
_cell.angle_beta          96.2 
_cell.angle_gamma         120.09 
_cell.entry_id            6UX0 
_cell.length_a            99.45 
_cell.length_b            99.06 
_cell.length_c            108.71 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H 1 1 
B,I,J,K 2 1 
C,L,M 3 1 
D,N,O 4 1 
E,P,Q,U 5 1 
F,R,S,T 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 402 A CYS 434 1_555 G FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc2 G FE HEM . A HEM 501 1_555 H N4 QKM . A QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 B SG CYS 402 B CYS 434 1_555 I FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc4 I FE HEM . B HEM 501 1_555 J N4 QKM . B QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc5 C SG CYS 402 C CYS 434 1_555 L FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc6 L FE HEM . C HEM 501 1_555 M N4 QKM . C QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc7 D SG CYS 402 D CYS 434 1_555 N FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc8 N FE HEM . D HEM 501 1_555 O N4 QKM . D QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc9 E SG CYS 402 E CYS 434 1_555 P FE HEM . E HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc10 P FE HEM . E HEM 501 1_555 Q N4 QKM . E QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc11 F SG CYS 402 F CYS 434 1_555 R FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc12 R FE HEM . F HEM 501 1_555 S N4 QKM . F QKM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6UX0 
_atom_sites.fract_transf_matrix[1][1]    0.010055 
_atom_sites.fract_transf_matrix[1][2]    0.005826 
_atom_sites.fract_transf_matrix[1][3]    0.001778 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011667 
_atom_sites.fract_transf_matrix[2][3]    0.00136 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 HEM A 1 501 500 HEM HEM . 
H 3 QKM A 1 502 510 QKM ISV . 
I 2 HEM B 1 501 500 HEM HEM . 
J 3 QKM B 1 502 510 QKM ISV . 
K 4 FE B 1 503 2 FE FE . 
L 2 HEM C 1 501 500 HEM HEM . 
M 3 QKM C 1 502 510 QKM ISV . 
N 2 HEM D 1 501 500 HEM HEM . 
O 3 QKM D 1 502 510 QKM ISV . 
P 2 HEM E 1 501 500 HEM HEM . 
Q 3 QKM E 1 502 510 QKM ISV . 
R 2 HEM F 1 501 500 HEM HEM . 
S 3 QKM F 1 502 510 QKM ISV . 
T 4 FE F 1 503 1 FE FE . 
U 5 HOH E 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . R 2 -10.726 -17.129 -13.903 1 63.46 ? CHA HEM 501 F 1 
HETATM 2 C CHB HEM . . . R 2 -12.757 -14.578 -10.386 1 75.13 ? CHB HEM 501 F 1 
HETATM 3 C CHC HEM . . . R 2 -11.157 -17.764 -7.16 1 65.79 ? CHC HEM 501 F 1 
HETATM 4 C CHD HEM . . . R 2 -8.608 -19.929 -10.585 1 66.84 ? CHD HEM 501 F 1 
HETATM 5 C C1A HEM . . . R 2 -11.435 -16.174 -13.234 1 60.99 ? C1A HEM 501 F 1 
HETATM 6 C C2A HEM . . . R 2 -12.086 -15.055 -13.813 1 55.41 ? C2A HEM 501 F 1 
HETATM 7 C C3A HEM . . . R 2 -12.64 -14.355 -12.823 1 55.33 ? C3A HEM 501 F 1 
HETATM 8 C C4A HEM . . . R 2 -12.337 -15.011 -11.625 1 63.63 ? C4A HEM 501 F 1 
HETATM 9 C CMA HEM . . . R 2 -13.444 -13.106 -13.015 1 55.99 ? CMA HEM 501 F 1 
HETATM 10 C CAA HEM . . . R 2 -12.224 -14.699 -15.267 1 53.81 ? CAA HEM 501 F 1 
HETATM 11 C CBA HEM . . . R 2 -11.026 -13.898 -15.73 1 55.44 ? CBA HEM 501 F 1 
HETATM 12 C CGA HEM . . . R 2 -10.969 -13.976 -17.221 1 50.01 ? CGA HEM 501 F 1 
HETATM 13 O O1A HEM . . . R 2 -10.025 -14.594 -17.741 1 55.7 ? O1A HEM 501 F 1 
HETATM 14 O O2A HEM . . . R 2 -11.847 -13.441 -17.931 1 37.02 ? O2A HEM 501 F 1 
HETATM 15 C C1B HEM . . . R 2 -12.525 -15.254 -9.176 1 80.73 ? C1B HEM 501 F 1 
HETATM 16 C C2B HEM . . . R 2 -13.064 -14.841 -7.914 1 79.4 ? C2B HEM 501 F 1 
HETATM 17 C C3B HEM . . . R 2 -12.624 -15.739 -6.969 1 77.29 ? C3B HEM 501 F 1 
HETATM 18 C C4B HEM . . . R 2 -11.797 -16.705 -7.745 1 70.14 ? C4B HEM 501 F 1 
HETATM 19 C CMB HEM . . . R 2 -13.942 -13.63 -7.71 1 87.69 ? CMB HEM 501 F 1 
HETATM 20 C CAB HEM . . . R 2 -12.885 -15.856 -5.497 1 79.46 ? CAB HEM 501 F 1 
HETATM 21 C CBB HEM . . . R 2 -13.765 -15.175 -4.775 1 81.89 ? CBB HEM 501 F 1 
HETATM 22 C C1C HEM . . . R 2 -10.294 -18.627 -7.785 1 69.23 ? C1C HEM 501 F 1 
HETATM 23 C C2C HEM . . . R 2 -9.483 -19.546 -7.112 1 69.33 ? C2C HEM 501 F 1 
HETATM 24 C C3C HEM . . . R 2 -8.719 -20.179 -8.092 1 68.11 ? C3C HEM 501 F 1 
HETATM 25 C C4C HEM . . . R 2 -9.1 -19.612 -9.352 1 69.02 ? C4C HEM 501 F 1 
HETATM 26 C CMC HEM . . . R 2 -9.492 -19.794 -5.613 1 69.79 ? CMC HEM 501 F 1 
HETATM 27 C CAC HEM . . . R 2 -7.721 -21.266 -7.932 1 71.85 ? CAC HEM 501 F 1 
HETATM 28 C CBC HEM . . . R 2 -7.329 -21.813 -6.772 1 77.89 ? CBC HEM 501 F 1 
HETATM 29 C C1D HEM . . . R 2 -9.04 -19.311 -11.762 1 65.22 ? C1D HEM 501 F 1 
HETATM 30 C C2D HEM . . . R 2 -8.56 -19.787 -13.063 1 62.59 ? C2D HEM 501 F 1 
HETATM 31 C C3D HEM . . . R 2 -9.152 -19.052 -13.975 1 59.28 ? C3D HEM 501 F 1 
HETATM 32 C C4D HEM . . . R 2 -9.997 -18.101 -13.242 1 61.19 ? C4D HEM 501 F 1 
HETATM 33 C CMD HEM . . . R 2 -7.602 -20.917 -13.308 1 71.02 ? CMD HEM 501 F 1 
HETATM 34 C CAD HEM . . . R 2 -8.911 -19.133 -15.44 1 62.52 ? CAD HEM 501 F 1 
HETATM 35 C CBD HEM . . . R 2 -9.997 -19.874 -16.195 1 73 ? CBD HEM 501 F 1 
HETATM 36 C CGD HEM . . . R 2 -9.668 -19.767 -17.678 1 83.91 ? CGD HEM 501 F 1 
HETATM 37 O O1D HEM . . . R 2 -8.849 -18.896 -18.125 1 82.17 ? O1D HEM 501 F 1 
HETATM 38 O O2D HEM . . . R 2 -10.218 -20.579 -18.465 1 88.49 ? O2D HEM 501 F 1 
HETATM 39 N NA HEM . . . R 2 -11.561 -16.104 -11.882 1 62.61 ? NA HEM 501 F 1 
HETATM 40 N NB HEM . . . R 2 -11.781 -16.343 -9.016 1 73.44 ? NB HEM 501 F 1 
HETATM 41 N NC HEM . . . R 2 -10.013 -18.645 -9.114 1 71.1 ? NC HEM 501 F 1 
HETATM 42 N ND HEM . . . R 2 -9.902 -18.297 -11.923 1 61.58 ? ND HEM 501 F 1 
HETATM 43 FE FE HEM . . . R 2 -10.782 -17.346 -10.557 1 65.31 ? FE HEM 501 F 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           374 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#