data_6UXL # _model_server_result.job_id 9GN_cZN9rvggmRdePgSEGA _model_server_result.datetime_utc '2024-10-10 09:33:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6UXL # _exptl.entry_id 6UXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UXL _cell.length_a 55.727 _cell.length_b 127.445 _cell.length_c 127.733 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H15 N2 O7 P' _chem_comp.formula_weight 306.209 _chem_comp.id PLG _chem_comp.mon_nstd_flag . _chem_comp.name N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLG doub 260 n y N1 C6 PLG sing 261 n y C2 C2A PLG sing 262 n n C2 C3 PLG sing 263 n y C2A H2A1 PLG sing 264 n n C2A H2A2 PLG sing 265 n n C2A H2A3 PLG sing 266 n n C3 O3 PLG sing 267 n n C3 C4 PLG doub 268 n y O3 HO3 PLG sing 269 n n C4 C4A PLG sing 270 n n C4 C5 PLG sing 271 n y C4A N PLG sing 272 n n C4A H4A1 PLG sing 273 n n C4A H4A2 PLG sing 274 n n C5 C6 PLG doub 275 n y C5 C5A PLG sing 276 n n C6 H6 PLG sing 277 n n C5A OP4 PLG sing 278 n n C5A H5A1 PLG sing 279 n n C5A H5A2 PLG sing 280 n n OP4 P PLG sing 281 n n P OP1 PLG doub 282 n n P OP2 PLG sing 283 n n P OP3 PLG sing 284 n n OP2 HOP2 PLG sing 285 n n OP3 HOP3 PLG sing 286 n n C O PLG doub 287 n n C OXT PLG sing 288 n n C CA PLG sing 289 n n OXT HXT PLG sing 290 n n CA N PLG sing 291 n n CA HA2 PLG sing 292 n n CA HA1 PLG sing 293 n n N H PLG sing 294 n n # _atom_sites.entry_id 6UXL _atom_sites.fract_transf_matrix[1][1] 0.017945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLG A 1 501 1 PLG PLG . D 2 PLG B 1 501 2 PLG PLG . E 3 HOH A 1 601 78 HOH HOH . E 3 HOH A 2 602 61 HOH HOH . E 3 HOH A 3 603 95 HOH HOH . E 3 HOH A 4 604 28 HOH HOH . E 3 HOH A 5 605 6 HOH HOH . E 3 HOH A 6 606 32 HOH HOH . E 3 HOH A 7 607 92 HOH HOH . E 3 HOH A 8 608 15 HOH HOH . E 3 HOH A 9 609 35 HOH HOH . E 3 HOH A 10 610 4 HOH HOH . E 3 HOH A 11 611 110 HOH HOH . E 3 HOH A 12 612 80 HOH HOH . E 3 HOH A 13 613 50 HOH HOH . E 3 HOH A 14 614 10 HOH HOH . E 3 HOH A 15 615 85 HOH HOH . E 3 HOH A 16 616 41 HOH HOH . E 3 HOH A 17 617 25 HOH HOH . E 3 HOH A 18 618 101 HOH HOH . E 3 HOH A 19 619 20 HOH HOH . E 3 HOH A 20 620 57 HOH HOH . E 3 HOH A 21 621 34 HOH HOH . E 3 HOH A 22 622 36 HOH HOH . E 3 HOH A 23 623 45 HOH HOH . E 3 HOH A 24 624 1 HOH HOH . E 3 HOH A 25 625 49 HOH HOH . E 3 HOH A 26 626 9 HOH HOH . E 3 HOH A 27 627 26 HOH HOH . E 3 HOH A 28 628 44 HOH HOH . E 3 HOH A 29 629 60 HOH HOH . E 3 HOH A 30 630 43 HOH HOH . E 3 HOH A 31 631 40 HOH HOH . E 3 HOH A 32 632 79 HOH HOH . E 3 HOH A 33 633 56 HOH HOH . E 3 HOH A 34 634 38 HOH HOH . E 3 HOH A 35 635 17 HOH HOH . E 3 HOH A 36 636 55 HOH HOH . E 3 HOH A 37 637 118 HOH HOH . E 3 HOH A 38 638 111 HOH HOH . E 3 HOH A 39 639 27 HOH HOH . E 3 HOH A 40 640 58 HOH HOH . E 3 HOH A 41 641 47 HOH HOH . F 3 HOH B 1 601 30 HOH HOH . F 3 HOH B 2 602 76 HOH HOH . F 3 HOH B 3 603 22 HOH HOH . F 3 HOH B 4 604 33 HOH HOH . F 3 HOH B 5 605 8 HOH HOH . F 3 HOH B 6 606 7 HOH HOH . F 3 HOH B 7 607 14 HOH HOH . F 3 HOH B 8 608 119 HOH HOH . F 3 HOH B 9 609 12 HOH HOH . F 3 HOH B 10 610 39 HOH HOH . F 3 HOH B 11 611 73 HOH HOH . F 3 HOH B 12 612 54 HOH HOH . F 3 HOH B 13 613 31 HOH HOH . F 3 HOH B 14 614 75 HOH HOH . F 3 HOH B 15 615 16 HOH HOH . F 3 HOH B 16 616 3 HOH HOH . F 3 HOH B 17 617 65 HOH HOH . F 3 HOH B 18 618 81 HOH HOH . F 3 HOH B 19 619 53 HOH HOH . F 3 HOH B 20 620 69 HOH HOH . F 3 HOH B 21 621 23 HOH HOH . F 3 HOH B 22 622 104 HOH HOH . F 3 HOH B 23 623 90 HOH HOH . F 3 HOH B 24 624 5 HOH HOH . F 3 HOH B 25 625 24 HOH HOH . F 3 HOH B 26 626 11 HOH HOH . F 3 HOH B 27 627 19 HOH HOH . F 3 HOH B 28 628 102 HOH HOH . F 3 HOH B 29 629 18 HOH HOH . F 3 HOH B 30 630 21 HOH HOH . F 3 HOH B 31 631 2 HOH HOH . F 3 HOH B 32 632 62 HOH HOH . F 3 HOH B 33 633 13 HOH HOH . F 3 HOH B 34 634 87 HOH HOH . F 3 HOH B 35 635 46 HOH HOH . F 3 HOH B 36 636 103 HOH HOH . F 3 HOH B 37 637 70 HOH HOH . F 3 HOH B 38 638 120 HOH HOH . F 3 HOH B 39 639 112 HOH HOH . F 3 HOH B 40 640 29 HOH HOH . F 3 HOH B 41 641 42 HOH HOH . F 3 HOH B 42 642 51 HOH HOH . F 3 HOH B 43 643 105 HOH HOH . F 3 HOH B 44 644 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLG . . . D 2 -12.483 -25.12 6.408 1 69.76 ? N1 PLG 501 B 1 HETATM 2 C C2 PLG . . . D 2 -13.228 -26.132 5.912 1 69.88 ? C2 PLG 501 B 1 HETATM 3 C C2A PLG . . . D 2 -12.763 -26.885 4.67 1 55.92 ? C2A PLG 501 B 1 HETATM 4 C C3 PLG . . . D 2 -14.416 -26.496 6.522 1 74.75 ? C3 PLG 501 B 1 HETATM 5 O O3 PLG . . . D 2 -15.17 -27.55 5.985 1 74.63 ? O3 PLG 501 B 1 HETATM 6 C C4 PLG . . . D 2 -14.839 -25.835 7.626 1 71.74 ? C4 PLG 501 B 1 HETATM 7 C C4A PLG . . . D 2 -16.156 -26.252 8.28 1 70.29 ? C4A PLG 501 B 1 HETATM 8 C C5 PLG . . . D 2 -14.086 -24.819 8.129 1 71.35 ? C5 PLG 501 B 1 HETATM 9 C C6 PLG . . . D 2 -12.9 -24.458 7.508 1 73.36 ? C6 PLG 501 B 1 HETATM 10 C C5A PLG . . . D 2 -14.528 -24.033 9.363 1 67.29 ? C5A PLG 501 B 1 HETATM 11 O OP4 PLG . . . D 2 -14.544 -24.797 10.533 1 61.69 ? OP4 PLG 501 B 1 HETATM 12 P P PLG . . . D 2 -15.401 -24.184 11.806 1 61.91 ? P PLG 501 B 1 HETATM 13 O OP1 PLG . . . D 2 -14.785 -24.614 13.113 1 60.8 ? OP1 PLG 501 B 1 HETATM 14 O OP2 PLG . . . D 2 -15.415 -22.674 11.74 1 68.56 ? OP2 PLG 501 B 1 HETATM 15 O OP3 PLG . . . D 2 -16.827 -24.679 11.749 1 64.69 ? OP3 PLG 501 B 1 HETATM 16 C C PLG . . . D 2 -18.469 -28.985 7.223 1 73.07 ? C PLG 501 B 1 HETATM 17 O O PLG . . . D 2 -17.933 -29.284 6.123 1 71 ? O PLG 501 B 1 HETATM 18 O OXT PLG . . . D 2 -19.38 -29.717 7.696 1 75.14 ? OXT PLG 501 B 1 HETATM 19 C CA PLG . . . D 2 -18.014 -27.739 7.985 1 69.04 ? CA PLG 501 B 1 HETATM 20 N N PLG . . . D 2 -16.639 -27.451 7.616 1 69.41 ? N PLG 501 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #