data_6UXN
#
_model_server_result.job_id            5UscD9m4O9sSJ9ROu5pZrw 
_model_server_result.datetime_utc      '2025-03-25 17:31:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uxn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":201}' 
#
_entry.id    6UXN 
#
_exptl.entry_id    6UXN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              511.543 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.07 
_cell.angle_gamma         90 
_cell.entry_id            6UXN 
_cell.length_a            157.762 
_cell.length_b            91.089 
_cell.length_c            96.395 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UXN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,M,N,O,P,Q,R,S,YA,ZA 1 1 
C,D,T,U,V,W,X,AB,BB 2 1 
E,F,Y,Z,AA,BA,CA,DA,EA,CB,DB 3 1 
G,H,FA,GA,HA,IA,JA,KA,LA,EB,FB 4 1 
I,J,MA,NA,OA,PA,GB,HB 5 1 
K,L,QA,RA,SA,TA,UA,VA,WA,XA,IB,JB 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 V N N 
? 2 W N N 
? 2 Y N N 
? 2 CA N N 
? 2 DA N N 
? 2 FA N N 
? 2 HA N N 
? 2 IA N N 
? 2 MA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 TA N N 
? 2 UA N N 
#
_chem_comp.formula           'C22 H42 N O10 P' 
_chem_comp.formula_weight    511.543 
_chem_comp.id                8SP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA 8SP sing 1 n n 
N H 8SP sing 2 n n 
N H2 8SP sing 3 n n 
P OG 8SP sing 4 n n 
P O2P 8SP doub 5 n n 
P O3G 8SP sing 6 n n 
P O3P 8SP sing 7 n n 
OG CB 8SP sing 8 n n 
C1A O1A 8SP doub 9 n n 
C1A O1G 8SP sing 10 n n 
C1A C2A 8SP sing 11 n n 
C1B O1B 8SP doub 12 n n 
C1B C2B 8SP sing 13 n n 
C1B O2G 8SP sing 14 n n 
CB CA 8SP sing 15 n n 
CB HB3 8SP sing 16 n n 
CB HB2 8SP sing 17 n n 
C1G O1G 8SP sing 18 n n 
C1G C2G 8SP sing 19 n n 
C1G H11G 8SP sing 20 n n 
C1G H21G 8SP sing 21 n n 
C2A C3A 8SP sing 22 n n 
C2A H12A 8SP sing 23 n n 
C2A H22A 8SP sing 24 n n 
C2B C3B 8SP sing 25 n n 
C2B H12B 8SP sing 26 n n 
C2B H22B 8SP sing 27 n n 
CA C 8SP sing 28 n n 
CA HA 8SP sing 29 n n 
C2G O2G 8SP sing 30 n n 
C2G C3G 8SP sing 31 n n 
C2G H2G 8SP sing 32 n n 
C3A C4A 8SP sing 33 n n 
C3A H13A 8SP sing 34 n n 
C3A H23A 8SP sing 35 n n 
C3B C4B 8SP sing 36 n n 
C3B H13B 8SP sing 37 n n 
C3B H23B 8SP sing 38 n n 
C O 8SP doub 39 n n 
C OXT 8SP sing 40 n n 
C3G O3G 8SP sing 41 n n 
C3G H13G 8SP sing 42 n n 
C3G H23G 8SP sing 43 n n 
C4A C5A 8SP sing 44 n n 
C4A H14A 8SP sing 45 n n 
C4A H24A 8SP sing 46 n n 
C4B C5B 8SP sing 47 n n 
C4B H14B 8SP sing 48 n n 
C4B H24B 8SP sing 49 n n 
C5A C6A 8SP sing 50 n n 
C5A H15A 8SP sing 51 n n 
C5A H25A 8SP sing 52 n n 
C5B C6B 8SP sing 53 n n 
C5B H15B 8SP sing 54 n n 
C5B H25B 8SP sing 55 n n 
C6A C7A 8SP sing 56 n n 
C6A H16A 8SP sing 57 n n 
C6A H26A 8SP sing 58 n n 
C6B C7B 8SP sing 59 n n 
C6B H16B 8SP sing 60 n n 
C6B H26B 8SP sing 61 n n 
C7A C8A 8SP sing 62 n n 
C7A H17A 8SP sing 63 n n 
C7A H27A 8SP sing 64 n n 
C7B C8B 8SP sing 65 n n 
C7B H17B 8SP sing 66 n n 
C7B H27B 8SP sing 67 n n 
C8A H18A 8SP sing 68 n n 
C8A H28A 8SP sing 69 n n 
C8A H38A 8SP sing 70 n n 
C8B H18B 8SP sing 71 n n 
C8B H28B 8SP sing 72 n n 
C8B H38B 8SP sing 73 n n 
OXT HXT 8SP sing 74 n n 
O3P H42 8SP sing 75 n n 
#
_atom_sites.entry_id                     6UXN 
_atom_sites.fract_transf_matrix[1][1]    0.006339 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001946 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 8SP A 1 201 200 8SP 8SP . 
N 2 8SP A 1 202 200 8SP 8SP . 
O 3 SO4 A 1 203 11 SO4 SO4 . 
P 2 8SP B 1 201 200 8SP 8SP . 
Q 2 8SP B 1 202 201 8SP 8SP . 
R 3 SO4 B 1 203 2 SO4 SO4 . 
S 3 SO4 B 1 204 3 SO4 SO4 . 
T 4 GOL C 1 201 1 GOL GOL . 
U 3 SO4 C 1 202 4 SO4 SO4 . 
V 2 8SP D 1 201 200 8SP 8SP . 
W 2 8SP D 1 202 201 8SP 8SP . 
X 3 SO4 D 1 203 12 SO4 SO4 . 
Y 2 8SP E 1 201 200 8SP 8SP . 
Z 3 SO4 E 1 202 5 SO4 SO4 . 
AA 3 SO4 E 1 203 16 SO4 SO4 . 
BA 3 SO4 E 1 204 19 SO4 SO4 . 
CA 2 8SP F 1 201 200 8SP 8SP . 
DA 2 8SP F 1 202 201 8SP 8SP . 
EA 3 SO4 F 1 203 18 SO4 SO4 . 
FA 2 8SP G 1 201 200 8SP 8SP . 
GA 3 SO4 G 1 202 6 SO4 SO4 . 
HA 2 8SP H 1 201 200 8SP 8SP . 
IA 2 8SP H 1 202 201 8SP 8SP . 
JA 3 SO4 H 1 203 1 SO4 SO4 . 
KA 3 SO4 H 1 204 7 SO4 SO4 . 
LA 3 SO4 H 1 205 14 SO4 SO4 . 
MA 2 8SP I 1 201 200 8SP 8SP . 
NA 3 SO4 I 1 202 8 SO4 SO4 . 
OA 2 8SP J 1 200 200 8SP 8SP . 
PA 2 8SP J 1 201 201 8SP 8SP . 
QA 2 8SP K 1 201 200 8SP 8SP . 
RA 3 SO4 K 1 202 9 SO4 SO4 . 
SA 3 SO4 K 1 203 17 SO4 SO4 . 
TA 2 8SP L 1 201 200 8SP 8SP . 
UA 2 8SP L 1 202 201 8SP 8SP . 
VA 3 SO4 L 1 203 10 SO4 SO4 . 
WA 3 SO4 L 1 204 13 SO4 SO4 . 
XA 3 SO4 L 1 205 15 SO4 SO4 . 
YA 5 HOH A 1 301 53 HOH HOH . 
YA 5 HOH A 2 302 52 HOH HOH . 
YA 5 HOH A 3 303 63 HOH HOH . 
YA 5 HOH A 4 304 13 HOH HOH . 
ZA 5 HOH B 1 301 70 HOH HOH . 
ZA 5 HOH B 2 302 9 HOH HOH . 
ZA 5 HOH B 3 303 64 HOH HOH . 
ZA 5 HOH B 4 304 12 HOH HOH . 
ZA 5 HOH B 5 305 7 HOH HOH . 
ZA 5 HOH B 6 306 31 HOH HOH . 
ZA 5 HOH B 7 307 55 HOH HOH . 
ZA 5 HOH B 8 308 28 HOH HOH . 
ZA 5 HOH B 9 309 38 HOH HOH . 
AB 5 HOH C 1 301 37 HOH HOH . 
AB 5 HOH C 2 302 8 HOH HOH . 
AB 5 HOH C 3 303 56 HOH HOH . 
AB 5 HOH C 4 304 32 HOH HOH . 
BB 5 HOH D 1 301 25 HOH HOH . 
BB 5 HOH D 2 302 26 HOH HOH . 
BB 5 HOH D 3 303 15 HOH HOH . 
BB 5 HOH D 4 304 54 HOH HOH . 
BB 5 HOH D 5 305 16 HOH HOH . 
BB 5 HOH D 6 306 66 HOH HOH . 
BB 5 HOH D 7 307 65 HOH HOH . 
BB 5 HOH D 8 308 59 HOH HOH . 
BB 5 HOH D 9 309 73 HOH HOH . 
CB 5 HOH E 1 301 33 HOH HOH . 
CB 5 HOH E 2 302 67 HOH HOH . 
CB 5 HOH E 3 303 29 HOH HOH . 
CB 5 HOH E 4 304 30 HOH HOH . 
CB 5 HOH E 5 305 61 HOH HOH . 
CB 5 HOH E 6 306 35 HOH HOH . 
CB 5 HOH E 7 307 34 HOH HOH . 
DB 5 HOH F 1 301 36 HOH HOH . 
DB 5 HOH F 2 302 19 HOH HOH . 
DB 5 HOH F 3 303 11 HOH HOH . 
DB 5 HOH F 4 304 21 HOH HOH . 
DB 5 HOH F 5 305 72 HOH HOH . 
DB 5 HOH F 6 306 60 HOH HOH . 
DB 5 HOH F 7 307 44 HOH HOH . 
DB 5 HOH F 8 308 71 HOH HOH . 
EB 5 HOH G 1 301 23 HOH HOH . 
EB 5 HOH G 2 302 4 HOH HOH . 
EB 5 HOH G 3 303 42 HOH HOH . 
EB 5 HOH G 4 304 20 HOH HOH . 
EB 5 HOH G 5 305 57 HOH HOH . 
FB 5 HOH H 1 301 1 HOH HOH . 
FB 5 HOH H 2 302 14 HOH HOH . 
FB 5 HOH H 3 303 41 HOH HOH . 
FB 5 HOH H 4 304 45 HOH HOH . 
FB 5 HOH H 5 305 43 HOH HOH . 
GB 5 HOH I 1 301 48 HOH HOH . 
GB 5 HOH I 2 302 68 HOH HOH . 
HB 5 HOH J 1 301 49 HOH HOH . 
HB 5 HOH J 2 302 5 HOH HOH . 
HB 5 HOH J 3 303 3 HOH HOH . 
HB 5 HOH J 4 304 40 HOH HOH . 
HB 5 HOH J 5 305 69 HOH HOH . 
HB 5 HOH J 6 306 24 HOH HOH . 
HB 5 HOH J 7 307 47 HOH HOH . 
HB 5 HOH J 8 308 27 HOH HOH . 
HB 5 HOH J 9 309 46 HOH HOH . 
HB 5 HOH J 10 310 58 HOH HOH . 
IB 5 HOH K 1 301 18 HOH HOH . 
IB 5 HOH K 2 302 51 HOH HOH . 
IB 5 HOH K 3 303 17 HOH HOH . 
JB 5 HOH L 1 301 6 HOH HOH . 
JB 5 HOH L 2 302 2 HOH HOH . 
JB 5 HOH L 3 303 10 HOH HOH . 
JB 5 HOH L 4 304 62 HOH HOH . 
JB 5 HOH L 5 305 22 HOH HOH . 
JB 5 HOH L 6 306 50 HOH HOH . 
JB 5 HOH L 7 307 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 8SP . . . P 2 -52.079 -19.111 51.599 1 81.62 ? N 8SP 201 B 1 
HETATM 2 P P 8SP . . . P 2 -49.199 -15.797 51.054 1 72.31 ? P 8SP 201 B 1 
HETATM 3 O OG 8SP . . . P 2 -49.97 -17.066 51.652 1 83.39 ? OG 8SP 201 B 1 
HETATM 4 C C1A 8SP . . . P 2 -55.374 -11.232 51.199 1 87.41 ? C1A 8SP 201 B 1 
HETATM 5 O O1A 8SP . . . P 2 -56.268 -11.789 51.881 1 103.78 ? O1A 8SP 201 B 1 
HETATM 6 C C1B 8SP . . . P 2 -51.012 -11.819 49.308 1 65.98 ? C1B 8SP 201 B 1 
HETATM 7 O O1B 8SP . . . P 2 -51.318 -12.333 48.208 1 70.55 ? O1B 8SP 201 B 1 
HETATM 8 C CB 8SP . . . P 2 -49.776 -18.368 51.055 1 84.43 ? CB 8SP 201 B 1 
HETATM 9 C C1G 8SP . . . P 2 -53.65 -13.064 51.501 1 67.22 ? C1G 8SP 201 B 1 
HETATM 10 O O1G 8SP . . . P 2 -54.165 -11.827 50.986 1 88.51 ? O1G 8SP 201 B 1 
HETATM 11 C C2A 8SP . . . P 2 -55.567 -9.897 50.591 1 59.43 ? C2A 8SP 201 B 1 
HETATM 12 C C2B 8SP . . . P 2 -49.933 -10.813 49.425 1 50.12 ? C2B 8SP 201 B 1 
HETATM 13 C CA 8SP . . . P 2 -51.084 -19.002 50.515 1 87.15 ? CA 8SP 201 B 1 
HETATM 14 C C2G 8SP . . . P 2 -52.359 -13.42 50.722 1 54.71 ? C2G 8SP 201 B 1 
HETATM 15 O O2G 8SP . . . P 2 -51.673 -12.185 50.448 1 68.64 ? O2G 8SP 201 B 1 
HETATM 16 O O2P 8SP . . . P 2 -48.31 -15.132 52.015 1 66.49 -1 O2P 8SP 201 B 1 
HETATM 17 C C3B 8SP . . . P 2 -49.852 -9.767 48.278 1 48.26 ? C3B 8SP 201 B 1 
HETATM 18 C C3G 8SP . . . P 2 -51.423 -14.446 51.415 1 55.74 ? C3G 8SP 201 B 1 
HETATM 19 O O3G 8SP . . . P 2 -50.305 -14.757 50.543 1 78.49 ? O3G 8SP 201 B 1 
HETATM 20 O O3P 8SP . . . P 2 -48.307 -16.298 49.671 1 85.77 -1 O3P 8SP 201 B 1 
HETATM 21 C C4B 8SP . . . P 2 -48.393 -9.448 47.856 1 62.42 ? C4B 8SP 201 B 1 
HETATM 22 C C5B 8SP . . . P 2 -48.317 -8.438 46.68 1 75.12 ? C5B 8SP 201 B 1 
HETATM 23 C C6B 8SP . . . P 2 -46.893 -7.859 46.45 1 76.86 ? C6B 8SP 201 B 1 
HETATM 24 C C7B 8SP . . . P 2 -46.897 -6.326 46.205 1 72.45 ? C7B 8SP 201 B 1 
HETATM 25 C C8B 8SP . . . P 2 -48.266 -5.661 46.477 1 69.84 ? C8B 8SP 201 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#