data_6UXP
#
_model_server_result.job_id            7Lw61Nm-w7veDzM4eaIhOw 
_model_server_result.datetime_utc      '2025-04-27 09:56:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uxp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    6UXP 
#
_exptl.entry_id    6UXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              497.537 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOCTANOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL) 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         83.86 
_cell.angle_beta          86.13 
_cell.angle_gamma         87.94 
_cell.entry_id            6UXP 
_cell.length_a            50.161 
_cell.length_b            51.567 
_cell.length_c            61.472 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,U,V 1 1 
C,D,J,K,L,M,N,O,P,W,X 2 1 
E,F,Q,R,Y,Z 3 1 
G,H,S,T,AA,BA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 N N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
#
_chem_comp.formula           'C22 H42 O10 P -1' 
_chem_comp.formula_weight    497.537 
_chem_comp.id                PG8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOCTANOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL) 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PG8 sing 237 n n 
O2 P1 PG8 doub 238 n n 
P1 O3 PG8 sing 239 n n 
P1 O6 PG8 sing 240 n n 
O3 C1 PG8 sing 241 n n 
C1 C2 PG8 sing 242 n n 
C1 H1 PG8 sing 243 n n 
C1 H2 PG8 sing 244 n n 
C2 C3 PG8 sing 245 n n 
C2 O5 PG8 sing 246 n n 
C2 H3 PG8 sing 247 n n 
C3 O4 PG8 sing 248 n n 
C3 H4 PG8 sing 249 n n 
C3 H5 PG8 sing 250 n n 
O4 H6 PG8 sing 251 n n 
O5 H7 PG8 sing 252 n n 
O6 C4 PG8 sing 253 n n 
C4 C5 PG8 sing 254 n n 
C4 H8 PG8 sing 255 n n 
C4 H9 PG8 sing 256 n n 
C5 C6 PG8 sing 257 n n 
C5 O9 PG8 sing 258 n n 
C5 H10 PG8 sing 259 n n 
C6 O7 PG8 sing 260 n n 
C6 H11 PG8 sing 261 n n 
C6 H12 PG8 sing 262 n n 
O7 C7 PG8 sing 263 n n 
C7 O8 PG8 doub 264 n n 
C7 C8 PG8 sing 265 n n 
C8 C9 PG8 sing 266 n n 
C8 H13 PG8 sing 267 n n 
C8 H14 PG8 sing 268 n n 
C9 C10 PG8 sing 269 n n 
C9 H15 PG8 sing 270 n n 
C9 H16 PG8 sing 271 n n 
C10 C11 PG8 sing 272 n n 
C10 H17 PG8 sing 273 n n 
C10 H18 PG8 sing 274 n n 
C11 C12 PG8 sing 275 n n 
C11 H19 PG8 sing 276 n n 
C11 H20 PG8 sing 277 n n 
C12 C13 PG8 sing 278 n n 
C12 H21 PG8 sing 279 n n 
C12 H22 PG8 sing 280 n n 
C13 C14 PG8 sing 281 n n 
C13 H23 PG8 sing 282 n n 
C13 H24 PG8 sing 283 n n 
C14 H25 PG8 sing 284 n n 
C14 H26 PG8 sing 285 n n 
C14 H27 PG8 sing 286 n n 
O9 C15 PG8 sing 287 n n 
C15 O10 PG8 doub 288 n n 
C15 C16 PG8 sing 289 n n 
C16 C17 PG8 sing 290 n n 
C16 H28 PG8 sing 291 n n 
C16 H29 PG8 sing 292 n n 
C17 C18 PG8 sing 293 n n 
C17 H30 PG8 sing 294 n n 
C17 H31 PG8 sing 295 n n 
C18 C19 PG8 sing 296 n n 
C18 H32 PG8 sing 297 n n 
C18 H33 PG8 sing 298 n n 
C19 C20 PG8 sing 299 n n 
C19 H34 PG8 sing 300 n n 
C19 H35 PG8 sing 301 n n 
C20 C21 PG8 sing 302 n n 
C20 H36 PG8 sing 303 n n 
C20 H37 PG8 sing 304 n n 
C21 C22 PG8 sing 305 n n 
C21 H38 PG8 sing 306 n n 
C21 H39 PG8 sing 307 n n 
C22 H40 PG8 sing 308 n n 
C22 H41 PG8 sing 309 n n 
C22 H42 PG8 sing 310 n n 
#
_atom_sites.entry_id                     6UXP 
_atom_sites.fract_transf_matrix[1][1]    0.019936 
_atom_sites.fract_transf_matrix[1][2]    -0.000716 
_atom_sites.fract_transf_matrix[1][3]    -0.00128 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019405 
_atom_sites.fract_transf_matrix[2][3]    -0.002046 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 PG8 B 1 200 200 PG8 PG8 . 
J 2 PG8 C 1 201 200 PG8 PG8 . 
K 2 PG8 C 1 202 200 PG8 PG8 . 
L 3 GOL C 1 203 1 GOL GOL . 
M 3 GOL C 1 204 3 GOL GOL . 
N 2 PG8 D 1 201 200 PG8 PG8 . 
O 3 GOL D 1 202 2 GOL GOL . 
P 3 GOL D 1 203 4 GOL GOL . 
Q 2 PG8 E 1 200 200 PG8 PG8 . 
R 2 PG8 F 1 200 200 PG8 PG8 . 
S 2 PG8 G 1 200 200 PG8 PG8 . 
T 2 PG8 H 1 200 200 PG8 PG8 . 
U 4 HOH A 1 201 7 HOH HOH . 
U 4 HOH A 2 202 23 HOH HOH . 
U 4 HOH A 3 203 16 HOH HOH . 
V 4 HOH B 1 301 13 HOH HOH . 
V 4 HOH B 2 302 9 HOH HOH . 
V 4 HOH B 3 303 24 HOH HOH . 
V 4 HOH B 4 304 14 HOH HOH . 
V 4 HOH B 5 305 15 HOH HOH . 
W 4 HOH C 1 301 17 HOH HOH . 
W 4 HOH C 2 302 2 HOH HOH . 
W 4 HOH C 3 303 3 HOH HOH . 
W 4 HOH C 4 304 12 HOH HOH . 
W 4 HOH C 5 305 28 HOH HOH . 
W 4 HOH C 6 306 18 HOH HOH . 
X 4 HOH D 1 301 20 HOH HOH . 
X 4 HOH D 2 302 19 HOH HOH . 
X 4 HOH D 3 303 10 HOH HOH . 
X 4 HOH D 4 304 32 HOH HOH . 
Y 4 HOH E 1 301 21 HOH HOH . 
Y 4 HOH E 2 302 27 HOH HOH . 
Z 4 HOH F 1 301 25 HOH HOH . 
AA 4 HOH G 1 301 1 HOH HOH . 
AA 4 HOH G 2 302 5 HOH HOH . 
BA 4 HOH H 1 301 30 HOH HOH . 
BA 4 HOH H 2 302 26 HOH HOH . 
BA 4 HOH H 3 303 11 HOH HOH . 
BA 4 HOH H 4 304 6 HOH HOH . 
BA 4 HOH H 5 305 8 HOH HOH . 
BA 4 HOH H 6 306 4 HOH HOH . 
BA 4 HOH H 7 307 22 HOH HOH . 
BA 4 HOH H 8 308 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG8 . . . J 2 12.763 -20.715 -58.05 1 92.3 ? O1 PG8 201 C 1 
HETATM 2 O O2 PG8 . . . J 2 11.393 -18.952 -59.089 1 88.5 ? O2 PG8 201 C 1 
HETATM 3 P P1 PG8 . . . J 2 11.65 -20.44 -59.036 1 91.72 ? P1 PG8 201 C 1 
HETATM 4 O O3 PG8 . . . J 2 12.09 -20.997 -60.526 1 97.33 ? O3 PG8 201 C 1 
HETATM 5 C C1 PG8 . . . J 2 12.719 -20.118 -61.417 1 101.41 ? C1 PG8 201 C 1 
HETATM 6 C C2 PG8 . . . J 2 12.317 -20.466 -62.851 1 104.45 ? C2 PG8 201 C 1 
HETATM 7 C C3 PG8 . . . J 2 12.996 -19.51 -63.83 1 107.18 ? C3 PG8 201 C 1 
HETATM 8 O O4 PG8 . . . J 2 12.435 -19.656 -65.107 1 108.73 ? O4 PG8 201 C 1 
HETATM 9 O O5 PG8 . . . J 2 12.706 -21.779 -63.146 1 105.19 ? O5 PG8 201 C 1 
HETATM 10 O O6 PG8 . . . J 2 10.28 -21.22 -58.553 1 89.21 ? O6 PG8 201 C 1 
HETATM 11 C C4 PG8 . . . J 2 10.339 -22.602 -58.338 1 79.96 ? C4 PG8 201 C 1 
HETATM 12 C C5 PG8 . . . J 2 9.062 -23.067 -57.642 1 70.03 ? C5 PG8 201 C 1 
HETATM 13 C C6 PG8 . . . J 2 8.949 -24.594 -57.691 1 67.81 ? C6 PG8 201 C 1 
HETATM 14 O O7 PG8 . . . J 2 7.663 -24.968 -58.109 1 72.16 ? O7 PG8 201 C 1 
HETATM 15 C C7 PG8 . . . J 2 6.779 -25.405 -57.105 1 70.27 ? C7 PG8 201 C 1 
HETATM 16 O O8 PG8 . . . J 2 5.997 -26.259 -57.352 1 71.71 ? O8 PG8 201 C 1 
HETATM 17 C C8 PG8 . . . J 2 6.793 -24.803 -55.696 1 66.33 ? C8 PG8 201 C 1 
HETATM 18 C C9 PG8 . . . J 2 5.429 -24.998 -55.035 1 64.52 ? C9 PG8 201 C 1 
HETATM 19 C C10 PG8 . . . J 2 5.363 -24.235 -53.712 1 63.76 ? C10 PG8 201 C 1 
HETATM 20 C C11 PG8 . . . J 2 5.099 -22.758 -53.992 1 64.52 ? C11 PG8 201 C 1 
HETATM 21 C C12 PG8 . . . J 2 4.638 -22.071 -52.711 1 63.26 ? C12 PG8 201 C 1 
HETATM 22 C C13 PG8 . . . J 2 5.761 -22.108 -51.682 1 66.99 ? C13 PG8 201 C 1 
HETATM 23 C C14 PG8 . . . J 2 5.473 -21.03 -50.644 1 68.36 ? C14 PG8 201 C 1 
HETATM 24 O O9 PG8 . . . J 2 9.113 -22.679 -56.301 1 67 ? O9 PG8 201 C 1 
HETATM 25 C C15 PG8 . . . J 2 8.631 -21.399 -56.014 1 64.64 ? C15 PG8 201 C 1 
HETATM 26 O O10 PG8 . . . J 2 8.187 -20.703 -56.864 1 69.57 ? O10 PG8 201 C 1 
HETATM 27 C C16 PG8 . . . J 2 8.685 -20.904 -54.575 1 59.71 ? C16 PG8 201 C 1 
HETATM 28 C C17 PG8 . . . J 2 8.522 -19.389 -54.571 1 57.63 ? C17 PG8 201 C 1 
HETATM 29 C C18 PG8 . . . J 2 8.534 -18.882 -53.132 1 58.7 ? C18 PG8 201 C 1 
HETATM 30 C C19 PG8 . . . J 2 8.625 -17.359 -53.137 1 62.65 ? C19 PG8 201 C 1 
HETATM 31 C C20 PG8 . . . J 2 8.535 -16.853 -51.701 1 66.8 ? C20 PG8 201 C 1 
HETATM 32 C C21 PG8 . . . J 2 8.388 -15.334 -51.706 1 72.85 ? C21 PG8 201 C 1 
HETATM 33 C C22 PG8 . . . J 2 8.132 -14.843 -50.283 1 75.6 ? C22 PG8 201 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#