data_6UXY # _model_server_result.job_id qldxLysHtp6GJb57JShTuQ _model_server_result.datetime_utc '2025-02-05 06:04:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6UXY # _exptl.entry_id 6UXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-2-amino-5-(2-cyclohexylethyl)-3-methyl-5-phenyl-3,5-dihydro-4H-imidazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UXY _cell.length_a 102.37 _cell.length_b 140.8 _cell.length_c 178.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H25 N3 O' _chem_comp.formula_weight 299.411 _chem_comp.id QKY _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-2-amino-5-(2-cyclohexylethyl)-3-methyl-5-phenyl-3,5-dihydro-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 QKY doub 299 n y C5 C6 QKY sing 300 n y C4 C3 QKY sing 301 n y C6 C7 QKY doub 302 n y O C QKY doub 303 n n C3 C8 QKY doub 304 n y C3 C1 QKY sing 305 n n C7 C8 QKY sing 306 n y C C1 QKY sing 307 n n C N QKY sing 308 n n C9 C1 QKY sing 309 n n C9 C10 QKY sing 310 n n C16 C15 QKY sing 311 n n C16 C11 QKY sing 312 n n C1 N1 QKY sing 313 n n C15 C14 QKY sing 314 n n N C17 QKY sing 315 n n N C2 QKY sing 316 n n C10 C11 QKY sing 317 n n C11 C12 QKY sing 318 n n N1 C2 QKY doub 319 n n C14 C13 QKY sing 320 n n C2 N2 QKY sing 321 n n C12 C13 QKY sing 322 n n C4 H1 QKY sing 323 n n C5 H2 QKY sing 324 n n C6 H3 QKY sing 325 n n C7 H4 QKY sing 326 n n C8 H5 QKY sing 327 n n C10 H6 QKY sing 328 n n C10 H7 QKY sing 329 n n C13 H8 QKY sing 330 n n C13 H9 QKY sing 331 n n C15 H10 QKY sing 332 n n C15 H11 QKY sing 333 n n C17 H12 QKY sing 334 n n C17 H13 QKY sing 335 n n C17 H14 QKY sing 336 n n C16 H15 QKY sing 337 n n C16 H16 QKY sing 338 n n N2 H17 QKY sing 339 n n N2 H18 QKY sing 340 n n C9 H19 QKY sing 341 n n C9 H20 QKY sing 342 n n C14 H21 QKY sing 343 n n C14 H22 QKY sing 344 n n C12 H23 QKY sing 345 n n C12 H24 QKY sing 346 n n C11 H25 QKY sing 347 n n # _atom_sites.entry_id 6UXY _atom_sites.fract_transf_matrix[1][1] 0.009768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 QKY A 1 701 4000 QKY LIG . D 4 EDO A 1 702 1 EDO EDO . E 5 GOL A 1 703 1 GOL GOL . F 6 HOH A 1 801 7 HOH HOH . F 6 HOH A 2 802 57 HOH HOH . F 6 HOH A 3 803 197 HOH HOH . F 6 HOH A 4 804 84 HOH HOH . F 6 HOH A 5 805 91 HOH HOH . F 6 HOH A 6 806 99 HOH HOH . F 6 HOH A 7 807 70 HOH HOH . F 6 HOH A 8 808 47 HOH HOH . F 6 HOH A 9 809 22 HOH HOH . F 6 HOH A 10 810 63 HOH HOH . F 6 HOH A 11 811 132 HOH HOH . F 6 HOH A 12 812 10 HOH HOH . F 6 HOH A 13 813 31 HOH HOH . F 6 HOH A 14 814 76 HOH HOH . F 6 HOH A 15 815 72 HOH HOH . F 6 HOH A 16 816 148 HOH HOH . F 6 HOH A 17 817 110 HOH HOH . F 6 HOH A 18 818 77 HOH HOH . F 6 HOH A 19 819 156 HOH HOH . F 6 HOH A 20 820 52 HOH HOH . F 6 HOH A 21 821 169 HOH HOH . F 6 HOH A 22 822 142 HOH HOH . F 6 HOH A 23 823 122 HOH HOH . F 6 HOH A 24 824 96 HOH HOH . F 6 HOH A 25 825 64 HOH HOH . F 6 HOH A 26 826 212 HOH HOH . F 6 HOH A 27 827 62 HOH HOH . F 6 HOH A 28 828 26 HOH HOH . F 6 HOH A 29 829 81 HOH HOH . F 6 HOH A 30 830 177 HOH HOH . F 6 HOH A 31 831 166 HOH HOH . F 6 HOH A 32 832 101 HOH HOH . F 6 HOH A 33 833 114 HOH HOH . F 6 HOH A 34 834 163 HOH HOH . F 6 HOH A 35 835 123 HOH HOH . F 6 HOH A 36 836 205 HOH HOH . F 6 HOH A 37 837 38 HOH HOH . F 6 HOH A 38 838 25 HOH HOH . F 6 HOH A 39 839 75 HOH HOH . F 6 HOH A 40 840 21 HOH HOH . F 6 HOH A 41 841 184 HOH HOH . F 6 HOH A 42 842 129 HOH HOH . F 6 HOH A 43 843 92 HOH HOH . F 6 HOH A 44 844 52 HOH HOH . F 6 HOH A 45 845 190 HOH HOH . F 6 HOH A 46 846 95 HOH HOH . F 6 HOH A 47 847 153 HOH HOH . F 6 HOH A 48 848 43 HOH HOH . F 6 HOH A 49 849 168 HOH HOH . F 6 HOH A 50 850 14 HOH HOH . F 6 HOH A 51 851 102 HOH HOH . F 6 HOH A 52 852 193 HOH HOH . F 6 HOH A 53 853 27 HOH HOH . F 6 HOH A 54 854 162 HOH HOH . F 6 HOH A 55 855 50 HOH HOH . F 6 HOH A 56 856 187 HOH HOH . F 6 HOH A 57 857 30 HOH HOH . F 6 HOH A 58 858 85 HOH HOH . F 6 HOH A 59 859 16 HOH HOH . F 6 HOH A 60 860 182 HOH HOH . F 6 HOH A 61 861 111 HOH HOH . F 6 HOH A 62 862 19 HOH HOH . F 6 HOH A 63 863 22 HOH HOH . F 6 HOH A 64 864 140 HOH HOH . F 6 HOH A 65 865 160 HOH HOH . F 6 HOH A 66 866 120 HOH HOH . F 6 HOH A 67 867 32 HOH HOH . F 6 HOH A 68 868 42 HOH HOH . F 6 HOH A 69 869 90 HOH HOH . F 6 HOH A 70 870 44 HOH HOH . F 6 HOH A 71 871 20 HOH HOH . F 6 HOH A 72 872 6 HOH HOH . F 6 HOH A 73 873 116 HOH HOH . F 6 HOH A 74 874 194 HOH HOH . F 6 HOH A 75 875 8 HOH HOH . F 6 HOH A 76 876 32 HOH HOH . F 6 HOH A 77 877 118 HOH HOH . F 6 HOH A 78 878 172 HOH HOH . F 6 HOH A 79 879 12 HOH HOH . F 6 HOH A 80 880 93 HOH HOH . F 6 HOH A 81 881 65 HOH HOH . F 6 HOH A 82 882 115 HOH HOH . F 6 HOH A 83 883 28 HOH HOH . F 6 HOH A 84 884 105 HOH HOH . F 6 HOH A 85 885 152 HOH HOH . F 6 HOH A 86 886 38 HOH HOH . F 6 HOH A 87 887 18 HOH HOH . F 6 HOH A 88 888 17 HOH HOH . F 6 HOH A 89 889 112 HOH HOH . F 6 HOH A 90 890 195 HOH HOH . F 6 HOH A 91 891 49 HOH HOH . F 6 HOH A 92 892 69 HOH HOH . F 6 HOH A 93 893 9 HOH HOH . F 6 HOH A 94 894 34 HOH HOH . F 6 HOH A 95 895 43 HOH HOH . F 6 HOH A 96 896 104 HOH HOH . F 6 HOH A 97 897 141 HOH HOH . F 6 HOH A 98 898 45 HOH HOH . F 6 HOH A 99 899 88 HOH HOH . F 6 HOH A 100 900 158 HOH HOH . F 6 HOH A 101 901 1 HOH HOH . F 6 HOH A 102 902 13 HOH HOH . F 6 HOH A 103 903 137 HOH HOH . F 6 HOH A 104 904 40 HOH HOH . F 6 HOH A 105 905 68 HOH HOH . F 6 HOH A 106 906 201 HOH HOH . F 6 HOH A 107 907 179 HOH HOH . F 6 HOH A 108 908 139 HOH HOH . F 6 HOH A 109 909 41 HOH HOH . F 6 HOH A 110 910 87 HOH HOH . F 6 HOH A 111 911 106 HOH HOH . F 6 HOH A 112 912 207 HOH HOH . F 6 HOH A 113 913 202 HOH HOH . F 6 HOH A 114 914 48 HOH HOH . F 6 HOH A 115 915 24 HOH HOH . F 6 HOH A 116 916 23 HOH HOH . F 6 HOH A 117 917 159 HOH HOH . F 6 HOH A 118 918 41 HOH HOH . F 6 HOH A 119 919 161 HOH HOH . F 6 HOH A 120 920 130 HOH HOH . F 6 HOH A 121 921 192 HOH HOH . F 6 HOH A 122 922 74 HOH HOH . F 6 HOH A 123 923 49 HOH HOH . F 6 HOH A 124 924 127 HOH HOH . F 6 HOH A 125 925 86 HOH HOH . F 6 HOH A 126 926 131 HOH HOH . F 6 HOH A 127 927 180 HOH HOH . F 6 HOH A 128 928 203 HOH HOH . F 6 HOH A 129 929 154 HOH HOH . F 6 HOH A 130 930 9 HOH HOH . F 6 HOH A 131 931 59 HOH HOH . F 6 HOH A 132 932 39 HOH HOH . F 6 HOH A 133 933 5 HOH HOH . F 6 HOH A 134 934 170 HOH HOH . F 6 HOH A 135 935 53 HOH HOH . F 6 HOH A 136 936 50 HOH HOH . F 6 HOH A 137 937 80 HOH HOH . F 6 HOH A 138 938 53 HOH HOH . F 6 HOH A 139 939 51 HOH HOH . F 6 HOH A 140 940 124 HOH HOH . F 6 HOH A 141 941 71 HOH HOH . F 6 HOH A 142 942 138 HOH HOH . F 6 HOH A 143 943 58 HOH HOH . F 6 HOH A 144 944 66 HOH HOH . F 6 HOH A 145 945 61 HOH HOH . F 6 HOH A 146 946 125 HOH HOH . F 6 HOH A 147 947 54 HOH HOH . F 6 HOH A 148 948 56 HOH HOH . F 6 HOH A 149 949 26 HOH HOH . F 6 HOH A 150 950 11 HOH HOH . F 6 HOH A 151 951 79 HOH HOH . F 6 HOH A 152 952 165 HOH HOH . F 6 HOH A 153 953 89 HOH HOH . F 6 HOH A 154 954 44 HOH HOH . F 6 HOH A 155 955 55 HOH HOH . F 6 HOH A 156 956 150 HOH HOH . F 6 HOH A 157 957 60 HOH HOH . F 6 HOH A 158 958 167 HOH HOH . F 6 HOH A 159 959 108 HOH HOH . F 6 HOH A 160 960 46 HOH HOH . F 6 HOH A 161 961 186 HOH HOH . F 6 HOH A 162 962 133 HOH HOH . F 6 HOH A 163 963 171 HOH HOH . F 6 HOH A 164 964 174 HOH HOH . F 6 HOH A 165 965 117 HOH HOH . F 6 HOH A 166 966 15 HOH HOH . F 6 HOH A 167 967 82 HOH HOH . F 6 HOH A 168 968 143 HOH HOH . F 6 HOH A 169 969 113 HOH HOH . F 6 HOH A 170 970 173 HOH HOH . F 6 HOH A 171 971 183 HOH HOH . F 6 HOH A 172 972 48 HOH HOH . F 6 HOH A 173 973 33 HOH HOH . F 6 HOH A 174 974 100 HOH HOH . F 6 HOH A 175 975 128 HOH HOH . F 6 HOH A 176 976 188 HOH HOH . F 6 HOH A 177 977 151 HOH HOH . G 6 HOH B 1 401 2 HOH HOH . G 6 HOH B 2 402 67 HOH HOH . G 6 HOH B 3 403 144 HOH HOH . G 6 HOH B 4 404 204 HOH HOH . G 6 HOH B 5 405 97 HOH HOH . G 6 HOH B 6 406 146 HOH HOH . G 6 HOH B 7 407 164 HOH HOH . G 6 HOH B 8 408 199 HOH HOH . G 6 HOH B 9 409 196 HOH HOH . G 6 HOH B 10 410 36 HOH HOH . G 6 HOH B 11 411 181 HOH HOH . G 6 HOH B 12 412 78 HOH HOH . G 6 HOH B 13 413 176 HOH HOH . G 6 HOH B 14 414 200 HOH HOH . G 6 HOH B 15 415 126 HOH HOH . G 6 HOH B 16 416 33 HOH HOH . G 6 HOH B 17 417 209 HOH HOH . G 6 HOH B 18 418 189 HOH HOH . G 6 HOH B 19 419 35 HOH HOH . G 6 HOH B 20 420 51 HOH HOH . G 6 HOH B 21 421 109 HOH HOH . G 6 HOH B 22 422 191 HOH HOH . G 6 HOH B 23 423 178 HOH HOH . G 6 HOH B 24 424 211 HOH HOH . G 6 HOH B 25 425 198 HOH HOH . G 6 HOH B 26 426 213 HOH HOH . G 6 HOH B 27 427 157 HOH HOH . G 6 HOH B 28 428 45 HOH HOH . G 6 HOH B 29 429 119 HOH HOH . G 6 HOH B 30 430 134 HOH HOH . G 6 HOH B 31 431 208 HOH HOH . G 6 HOH B 32 432 175 HOH HOH . G 6 HOH B 33 433 210 HOH HOH . G 6 HOH B 34 434 121 HOH HOH . G 6 HOH B 35 435 185 HOH HOH . G 6 HOH B 36 436 135 HOH HOH . G 6 HOH B 37 437 3 HOH HOH . G 6 HOH B 38 438 83 HOH HOH . G 6 HOH B 39 439 37 HOH HOH . G 6 HOH B 40 440 98 HOH HOH . G 6 HOH B 41 441 29 HOH HOH . G 6 HOH B 42 442 42 HOH HOH . G 6 HOH B 43 443 136 HOH HOH . G 6 HOH B 44 444 73 HOH HOH . G 6 HOH B 45 445 155 HOH HOH . G 6 HOH B 46 446 145 HOH HOH . G 6 HOH B 47 447 103 HOH HOH . G 6 HOH B 48 448 94 HOH HOH . G 6 HOH B 49 449 149 HOH HOH . G 6 HOH B 50 450 4 HOH HOH . G 6 HOH B 51 451 24 HOH HOH . G 6 HOH B 52 452 206 HOH HOH . G 6 HOH B 53 453 107 HOH HOH . G 6 HOH B 54 454 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QKY . . . C 3 12.985 -47.286 -16.448 1 57.56 ? N1 QKY 701 A 1 HETATM 2 C C4 QKY . . . C 3 11.792 -48.027 -19.941 1 53.96 ? C4 QKY 701 A 1 HETATM 3 C C5 QKY . . . C 3 10.647 -48.469 -20.594 1 53.52 ? C5 QKY 701 A 1 HETATM 4 C C6 QKY . . . C 3 9.455 -48.592 -19.905 1 53.4 ? C6 QKY 701 A 1 HETATM 5 C C7 QKY . . . C 3 9.406 -48.28 -18.558 1 53.49 ? C7 QKY 701 A 1 HETATM 6 C C8 QKY . . . C 3 10.549 -47.841 -17.898 1 54.11 ? C8 QKY 701 A 1 HETATM 7 C C10 QKY . . . C 3 13.451 -44.593 -17.095 1 55.4 ? C10 QKY 701 A 1 HETATM 8 C C13 QKY . . . C 3 11.417 -41.795 -15.282 1 56.89 ? C13 QKY 701 A 1 HETATM 9 C C15 QKY . . . C 3 11.463 -41.294 -17.756 1 57.19 ? C15 QKY 701 A 1 HETATM 10 C C17 QKY . . . C 3 16.236 -48.826 -17.124 1 57.41 ? C17 QKY 701 A 1 HETATM 11 O O QKY . . . C 3 14.752 -47.832 -19.421 1 59.88 ? O QKY 701 A 1 HETATM 12 C C QKY . . . C 3 14.311 -47.728 -18.293 1 58.37 ? C QKY 701 A 1 HETATM 13 C C16 QKY . . . C 3 12.522 -42.385 -17.946 1 56.4 ? C16 QKY 701 A 1 HETATM 14 N N2 QKY . . . C 3 14.495 -48.309 -14.834 1 57.16 ? N2 QKY 701 A 1 HETATM 15 N N QKY . . . C 3 14.925 -48.161 -17.145 1 57.75 ? N QKY 701 A 1 HETATM 16 C C1 QKY . . . C 3 12.976 -47.045 -17.889 1 56.87 ? C1 QKY 701 A 1 HETATM 17 C C2 QKY . . . C 3 14.112 -47.925 -16.038 1 57.74 ? C2 QKY 701 A 1 HETATM 18 C C3 QKY . . . C 3 11.758 -47.694 -18.583 1 55 ? C3 QKY 701 A 1 HETATM 19 C C9 QKY . . . C 3 13.096 -45.546 -18.241 1 55.74 ? C9 QKY 701 A 1 HETATM 20 C C14 QKY . . . C 3 11.522 -40.697 -16.345 1 57.4 ? C14 QKY 701 A 1 HETATM 21 C C12 QKY . . . C 3 12.477 -42.884 -15.496 1 56.36 ? C12 QKY 701 A 1 HETATM 22 C C11 QKY . . . C 3 12.404 -43.498 -16.896 1 56.14 ? C11 QKY 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #