data_6UY0 # _model_server_result.job_id dd22Zw5bvQGtYflg803jyA _model_server_result.datetime_utc '2024-11-29 19:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1601}' # _entry.id 6UY0 # _exptl.entry_id 6UY0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UY0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 685 A SER 685 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc2 A OE1 GLN 713 A GLN 713 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 A OG SER 1333 A SER 1333 1_555 E MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc4 A OE1 GLN 1374 A GLN 1374 1_555 E MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 B O1G ATP . A ATP 1601 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc6 B O1B ATP . A ATP 1601 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc7 C O2B ADP . A ADP 1602 1_555 E MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6UY0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1601 1601 ATP ATP . C 3 ADP A 1 1602 1602 ADP ADP . D 4 MG A 1 1603 1603 MG MG . E 4 MG A 1 1604 1604 MG MG . F 5 CLR A 1 1605 1605 CLR CLR . G 5 CLR A 1 1606 1606 CLR CLR . H 5 CLR A 1 1607 1607 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 112.947 142.682 176.564 1 129.42 ? PG ATP 1601 A 1 HETATM 2 O O1G ATP . . . B 2 113.446 143.04 175.183 1 128.53 ? O1G ATP 1601 A 1 HETATM 3 O O2G ATP . . . B 2 113.178 143.782 177.572 1 128.63 ? O2G ATP 1601 A 1 HETATM 4 O O3G ATP . . . B 2 111.521 142.192 176.553 1 131.85 ? O3G ATP 1601 A 1 HETATM 5 P PB ATP . . . B 2 114.642 140.303 176.279 1 123.87 ? PB ATP 1601 A 1 HETATM 6 O O1B ATP . . . B 2 115.232 140.909 175.052 1 127.84 ? O1B ATP 1601 A 1 HETATM 7 O O2B ATP . . . B 2 113.759 139.092 176.171 1 120.78 ? O2B ATP 1601 A 1 HETATM 8 O O3B ATP . . . B 2 113.839 141.437 177.072 1 127.09 ? O3B ATP 1601 A 1 HETATM 9 P PA ATP . . . B 2 117.42 139.897 177.018 1 126.72 ? PA ATP 1601 A 1 HETATM 10 O O1A ATP . . . B 2 117.636 139.114 175.767 1 133.09 ? O1A ATP 1601 A 1 HETATM 11 O O2A ATP . . . B 2 117.941 141.301 177.036 1 127.33 ? O2A ATP 1601 A 1 HETATM 12 O O3A ATP . . . B 2 115.841 139.983 177.29 1 125.3 ? O3A ATP 1601 A 1 HETATM 13 O O5' ATP . . . B 2 118.064 139.06 178.218 1 130.64 ? O5' ATP 1601 A 1 HETATM 14 C C5' ATP . . . B 2 117.51 139.006 179.527 1 130.55 ? C5' ATP 1601 A 1 HETATM 15 C C4' ATP . . . B 2 118.591 139.164 180.593 1 130.36 ? C4' ATP 1601 A 1 HETATM 16 O O4' ATP . . . B 2 119.903 138.901 180.089 1 127.8 ? O4' ATP 1601 A 1 HETATM 17 C C3' ATP . . . B 2 118.603 140.59 181.103 1 134.61 ? C3' ATP 1601 A 1 HETATM 18 O O3' ATP . . . B 2 117.929 140.656 182.362 1 143.37 ? O3' ATP 1601 A 1 HETATM 19 C C2' ATP . . . B 2 120.062 140.995 181.19 1 135.82 ? C2' ATP 1601 A 1 HETATM 20 O O2' ATP . . . B 2 120.507 141.159 182.539 1 146.94 ? O2' ATP 1601 A 1 HETATM 21 C C1' ATP . . . B 2 120.842 139.871 180.542 1 131.08 ? C1' ATP 1601 A 1 HETATM 22 N N9 ATP . . . B 2 121.595 140.464 179.416 1 127.19 ? N9 ATP 1601 A 1 HETATM 23 C C8 ATP . . . B 2 121.08 140.854 178.238 1 125.31 ? C8 ATP 1601 A 1 HETATM 24 N N7 ATP . . . B 2 122.041 141.371 177.433 1 125.37 ? N7 ATP 1601 A 1 HETATM 25 C C5 ATP . . . B 2 123.201 141.319 178.109 1 125.88 ? C5 ATP 1601 A 1 HETATM 26 C C6 ATP . . . B 2 124.604 141.7 177.849 1 125.98 ? C6 ATP 1601 A 1 HETATM 27 N N6 ATP . . . B 2 124.974 142.253 176.674 1 126.67 ? N6 ATP 1601 A 1 HETATM 28 N N1 ATP . . . B 2 125.508 141.476 178.822 1 126.35 ? N1 ATP 1601 A 1 HETATM 29 C C2 ATP . . . B 2 125.157 140.925 179.995 1 126.93 ? C2 ATP 1601 A 1 HETATM 30 N N3 ATP . . . B 2 123.903 140.558 180.298 1 124.87 ? N3 ATP 1601 A 1 HETATM 31 C C4 ATP . . . B 2 122.899 140.726 179.414 1 126.01 ? C4 ATP 1601 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 42 _model_server_stats.element_count 31 #