data_6UZ0
#
_model_server_result.job_id            oVx4RvLfdFGSokSMiwRYyw 
_model_server_result.datetime_utc      '2024-11-30 18:56:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uz0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3009}' 
#
_entry.id    6UZ0 
#
_exptl.entry_id    6UZ0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UZ0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UZ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 3001 NAG 
2 n B NAG 2 B 2 NAG A 3002 NAG 
3 n C NAG 1 C 1 NAG A 3004 NAG 
3 n C NAG 2 C 2 NAG A 3005 NAG 
3 n C BMA 3 C 3 BMA A 3006 BMA 
2 n D NAG 1 D 1 NAG A 3007 NAG 
2 n D NAG 2 D 2 NAG A 3008 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 281 A CYS 281 1_555 A SG CYS 336 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
disulf ? disulf2 A SG CYS 327 A CYS 327 1_555 A SG CYS 342 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf3 A SG CYS 712 A CYS 909 1_555 A SG CYS 721 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 319 A ASN 319 1_555 E C1 NAG . A NAG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 329 A ASN 329 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? 
covale ? covale3 A ND2 ASN 1064 A ASN 1382 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 A ND2 ASN 1072 A ASN 1390 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 532 n n 
C1 O1 NAG sing 533 n n 
C1 O5 NAG sing 534 n n 
C1 H1 NAG sing 535 n n 
C2 C3 NAG sing 536 n n 
C2 N2 NAG sing 537 n n 
C2 H2 NAG sing 538 n n 
C3 C4 NAG sing 539 n n 
C3 O3 NAG sing 540 n n 
C3 H3 NAG sing 541 n n 
C4 C5 NAG sing 542 n n 
C4 O4 NAG sing 543 n n 
C4 H4 NAG sing 544 n n 
C5 C6 NAG sing 545 n n 
C5 O5 NAG sing 546 n n 
C5 H5 NAG sing 547 n n 
C6 O6 NAG sing 548 n n 
C6 H61 NAG sing 549 n n 
C6 H62 NAG sing 550 n n 
C7 C8 NAG sing 551 n n 
C7 N2 NAG sing 552 n n 
C7 O7 NAG doub 553 n n 
C8 H81 NAG sing 554 n n 
C8 H82 NAG sing 555 n n 
C8 H83 NAG sing 556 n n 
N2 HN2 NAG sing 557 n n 
O1 HO1 NAG sing 558 n n 
O3 HO3 NAG sing 559 n n 
O4 HO4 NAG sing 560 n n 
O6 HO6 NAG sing 561 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6UZ0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 NAG A 1 3003 3003 NAG NAG . 
F 4 NAG A 1 3009 3009 NAG NAG . 
G 5 9Z9 A 1 3010 3101 9Z9 9Z9 . 
H 5 9Z9 A 1 3011 3102 9Z9 9Z9 . 
I 5 9Z9 A 1 3012 3103 9Z9 9Z9 . 
J 5 9Z9 A 1 3013 3104 9Z9 9Z9 . 
K 5 9Z9 A 1 3014 3105 9Z9 9Z9 . 
L 6 6OU A 1 3015 3201 6OU 6OU . 
M 6 6OU A 1 3016 3202 6OU 6OU . 
N 6 6OU A 1 3017 3203 6OU 6OU . 
O 6 6OU A 1 3018 3204 6OU 6OU . 
P 6 6OU A 1 3019 3205 6OU 6OU . 
Q 6 6OU A 1 3020 3206 6OU 6OU . 
R 6 6OU A 1 3021 3207 6OU 6OU . 
S 6 6OU A 1 3022 3208 6OU 6OU . 
T 6 6OU A 1 3023 3209 6OU 6OU . 
U 6 6OU A 1 3024 3210 6OU 6OU . 
V 6 6OU A 1 3025 3211 6OU 6OU . 
W 7 K4D A 1 3026 1 K4D K4D . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 4 120.756 127.189 178.422 1 65.65 ? C1 NAG 3009 A 1 
HETATM 2 C C2 NAG . . . F 4 120.402 125.896 179.138 1 65.65 ? C2 NAG 3009 A 1 
HETATM 3 C C3 NAG . . . F 4 119.695 124.921 178.215 1 65.65 ? C3 NAG 3009 A 1 
HETATM 4 C C4 NAG . . . F 4 118.532 125.621 177.542 1 65.65 ? C4 NAG 3009 A 1 
HETATM 5 C C5 NAG . . . F 4 119.06 126.833 176.81 1 65.65 ? C5 NAG 3009 A 1 
HETATM 6 C C6 NAG . . . F 4 117.94 127.532 176.065 1 65.65 ? C6 NAG 3009 A 1 
HETATM 7 C C7 NAG . . . F 4 122.234 125.756 180.704 1 65.65 ? C7 NAG 3009 A 1 
HETATM 8 C C8 NAG . . . F 4 122.309 127.247 180.815 1 65.65 ? C8 NAG 3009 A 1 
HETATM 9 N N2 NAG . . . F 4 121.612 125.285 179.634 1 65.65 ? N2 NAG 3009 A 1 
HETATM 10 O O3 NAG . . . F 4 119.212 123.813 178.978 1 65.65 ? O3 NAG 3009 A 1 
HETATM 11 O O4 NAG . . . F 4 117.889 124.754 176.604 1 65.65 ? O4 NAG 3009 A 1 
HETATM 12 O O5 NAG . . . F 4 119.621 127.73 177.757 1 65.65 ? O5 NAG 3009 A 1 
HETATM 13 O O6 NAG . . . F 4 117.121 126.547 175.437 1 65.65 ? O6 NAG 3009 A 1 
HETATM 14 O O7 NAG . . . F 4 122.715 125.016 181.54 1 65.65 ? O7 NAG 3009 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           511 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#