data_6UZ0
#
_model_server_result.job_id            tUNseVoA9zUMxJdFmS_6SA 
_model_server_result.datetime_utc      '2024-11-27 21:38:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uz0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":3011}' 
#
_entry.id    6UZ0 
#
_exptl.entry_id    6UZ0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              544.805 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UZ0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UZ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 3001 NAG 
2 n B NAG 2 B 2 NAG A 3002 NAG 
3 n C NAG 1 C 1 NAG A 3004 NAG 
3 n C NAG 2 C 2 NAG A 3005 NAG 
3 n C BMA 3 C 3 BMA A 3006 BMA 
2 n D NAG 1 D 1 NAG A 3007 NAG 
2 n D NAG 2 D 2 NAG A 3008 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 281 A CYS 281 1_555 A SG CYS 336 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
disulf ? disulf2 A SG CYS 327 A CYS 327 1_555 A SG CYS 342 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf3 A SG CYS 712 A CYS 909 1_555 A SG CYS 721 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 319 A ASN 319 1_555 E C1 NAG . A NAG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 329 A ASN 329 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? 
covale ? covale3 A ND2 ASN 1064 A ASN 1382 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 A ND2 ASN 1072 A ASN 1390 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C34 H56 O5' 
_chem_comp.formula_weight    544.805 
_chem_comp.id                9Z9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O25 C26 9Z9 sing 125 n n 
O25 C24 9Z9 sing 126 n n 
C50 O49 9Z9 sing 127 n n 
O49 C48 9Z9 sing 128 n n 
C24 C23 9Z9 sing 129 n n 
C48 C23 9Z9 sing 130 n n 
C23 C22 9Z9 sing 131 n n 
C22 C21 9Z9 sing 132 n n 
C21 O20 9Z9 sing 133 n n 
O20 C17 9Z9 sing 134 n n 
C17 C18 9Z9 sing 135 n n 
C17 C16 9Z9 sing 136 n n 
C18 C19 9Z9 sing 137 n n 
C16 C13 9Z9 sing 138 n n 
C19 C11 9Z9 sing 139 n n 
C13 C11 9Z9 sing 140 n n 
C13 C14 9Z9 doub 141 n n 
C11 C12 9Z9 sing 142 n n 
C11 C08 9Z9 sing 143 n n 
C14 C15 9Z9 sing 144 n n 
C08 C09 9Z9 sing 145 n n 
C08 C07 9Z9 sing 146 n n 
C15 C07 9Z9 sing 147 n n 
C09 C10 9Z9 sing 148 n n 
C07 C06 9Z9 sing 149 n n 
C10 C02 9Z9 sing 150 n n 
C06 C02 9Z9 sing 151 n n 
C06 C05 9Z9 sing 152 n n 
C02 C01 9Z9 sing 153 n n 
C02 C03 9Z9 sing 154 n n 
C05 C04 9Z9 sing 155 n n 
C03 C04 9Z9 sing 156 n n 
C03 C74 9Z9 sing 157 n n 
C04 O72 9Z9 sing 158 n n 
C74 C75 9Z9 sing 159 n n 
C74 C73 9Z9 sing 160 n n 
O72 C73 9Z9 sing 161 n n 
C73 O80 9Z9 sing 162 n n 
C73 C76 9Z9 sing 163 n n 
O80 C79 9Z9 sing 164 n n 
C76 C77 9Z9 sing 165 n n 
C79 C78 9Z9 sing 166 n n 
C77 C78 9Z9 sing 167 n n 
C78 C81 9Z9 sing 168 n n 
C01 H1 9Z9 sing 169 n n 
C01 H2 9Z9 sing 170 n n 
C01 H3 9Z9 sing 171 n n 
C03 H4 9Z9 sing 172 n n 
C04 H5 9Z9 sing 173 n n 
C05 H6 9Z9 sing 174 n n 
C05 H7 9Z9 sing 175 n n 
C06 H8 9Z9 sing 176 n n 
C07 H9 9Z9 sing 177 n n 
C08 H10 9Z9 sing 178 n n 
C09 H11 9Z9 sing 179 n n 
C09 H12 9Z9 sing 180 n n 
C10 H13 9Z9 sing 181 n n 
C10 H14 9Z9 sing 182 n n 
C12 H15 9Z9 sing 183 n n 
C12 H16 9Z9 sing 184 n n 
C12 H17 9Z9 sing 185 n n 
C14 H18 9Z9 sing 186 n n 
C15 H19 9Z9 sing 187 n n 
C15 H20 9Z9 sing 188 n n 
C16 H21 9Z9 sing 189 n n 
C16 H22 9Z9 sing 190 n n 
C17 H23 9Z9 sing 191 n n 
C18 H24 9Z9 sing 192 n n 
C18 H25 9Z9 sing 193 n n 
C19 H26 9Z9 sing 194 n n 
C19 H27 9Z9 sing 195 n n 
C21 H28 9Z9 sing 196 n n 
C21 H29 9Z9 sing 197 n n 
C22 H30 9Z9 sing 198 n n 
C22 H31 9Z9 sing 199 n n 
C23 H32 9Z9 sing 200 n n 
C24 H33 9Z9 sing 201 n n 
C24 H34 9Z9 sing 202 n n 
C26 H35 9Z9 sing 203 n n 
C26 H36 9Z9 sing 204 n n 
C26 H37 9Z9 sing 205 n n 
C48 H38 9Z9 sing 206 n n 
C48 H39 9Z9 sing 207 n n 
C50 H40 9Z9 sing 208 n n 
C50 H41 9Z9 sing 209 n n 
C50 H42 9Z9 sing 210 n n 
C74 H43 9Z9 sing 211 n n 
C75 H44 9Z9 sing 212 n n 
C75 H45 9Z9 sing 213 n n 
C75 H46 9Z9 sing 214 n n 
C76 H47 9Z9 sing 215 n n 
C76 H48 9Z9 sing 216 n n 
C77 H49 9Z9 sing 217 n n 
C77 H50 9Z9 sing 218 n n 
C78 H51 9Z9 sing 219 n n 
C79 H52 9Z9 sing 220 n n 
C79 H53 9Z9 sing 221 n n 
C81 H54 9Z9 sing 222 n n 
C81 H55 9Z9 sing 223 n n 
C81 H56 9Z9 sing 224 n n 
#
_atom_sites.entry_id                     6UZ0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 NAG A 1 3003 3003 NAG NAG . 
F 4 NAG A 1 3009 3009 NAG NAG . 
G 5 9Z9 A 1 3010 3101 9Z9 9Z9 . 
H 5 9Z9 A 1 3011 3102 9Z9 9Z9 . 
I 5 9Z9 A 1 3012 3103 9Z9 9Z9 . 
J 5 9Z9 A 1 3013 3104 9Z9 9Z9 . 
K 5 9Z9 A 1 3014 3105 9Z9 9Z9 . 
L 6 6OU A 1 3015 3201 6OU 6OU . 
M 6 6OU A 1 3016 3202 6OU 6OU . 
N 6 6OU A 1 3017 3203 6OU 6OU . 
O 6 6OU A 1 3018 3204 6OU 6OU . 
P 6 6OU A 1 3019 3205 6OU 6OU . 
Q 6 6OU A 1 3020 3206 6OU 6OU . 
R 6 6OU A 1 3021 3207 6OU 6OU . 
S 6 6OU A 1 3022 3208 6OU 6OU . 
T 6 6OU A 1 3023 3209 6OU 6OU . 
U 6 6OU A 1 3024 3210 6OU 6OU . 
V 6 6OU A 1 3025 3211 6OU 6OU . 
W 7 K4D A 1 3026 1 K4D K4D . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 9Z9 . . . H 5 107.516 158.431 159.033 1 67.12 ? C01 9Z9 3011 A 1 
HETATM 2 C C02 9Z9 . . . H 5 107.14 156.99 159.411 1 67.12 ? C02 9Z9 3011 A 1 
HETATM 3 C C03 9Z9 . . . H 5 106.723 156.288 157.937 1 67.12 ? C03 9Z9 3011 A 1 
HETATM 4 C C04 9Z9 . . . H 5 107.9 155.662 157.397 1 67.12 ? C04 9Z9 3011 A 1 
HETATM 5 C C05 9Z9 . . . H 5 109.226 156.224 158.427 1 67.12 ? C05 9Z9 3011 A 1 
HETATM 6 C C06 9Z9 . . . H 5 108.463 156.258 159.827 1 67.12 ? C06 9Z9 3011 A 1 
HETATM 7 C C07 9Z9 . . . H 5 108.926 156.607 160.809 1 67.12 ? C07 9Z9 3011 A 1 
HETATM 8 C C08 9Z9 . . . H 5 108.051 156.497 161.802 1 67.12 ? C08 9Z9 3011 A 1 
HETATM 9 C C09 9Z9 . . . H 5 106.823 157.318 161.487 1 67.12 ? C09 9Z9 3011 A 1 
HETATM 10 C C10 9Z9 . . . H 5 106.325 157.088 160.32 1 67.12 ? C10 9Z9 3011 A 1 
HETATM 11 O O72 9Z9 . . . H 5 108.046 156.079 155.992 1 67.12 ? O72 9Z9 3011 A 1 
HETATM 12 C C73 9Z9 . . . H 5 106.906 156.669 155.647 1 67.12 ? C73 9Z9 3011 A 1 
HETATM 13 C C74 9Z9 . . . H 5 106.353 157.25 156.983 1 67.12 ? C74 9Z9 3011 A 1 
HETATM 14 C C75 9Z9 . . . H 5 104.809 157.348 156.904 1 67.12 ? C75 9Z9 3011 A 1 
HETATM 15 C C76 9Z9 . . . H 5 107.225 157.829 154.659 1 67.12 ? C76 9Z9 3011 A 1 
HETATM 16 C C77 9Z9 . . . H 5 107.314 157.402 153.267 1 67.12 ? C77 9Z9 3011 A 1 
HETATM 17 C C78 9Z9 . . . H 5 106.078 156.707 152.888 1 67.12 ? C78 9Z9 3011 A 1 
HETATM 18 C C79 9Z9 . . . H 5 105.959 155.407 153.719 1 67.12 ? C79 9Z9 3011 A 1 
HETATM 19 O O80 9Z9 . . . H 5 105.928 155.675 155.154 1 67.12 ? O80 9Z9 3011 A 1 
HETATM 20 C C81 9Z9 . . . H 5 106.135 156.356 151.378 1 67.12 ? C81 9Z9 3011 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#