data_6UZ0 # _model_server_result.job_id 6ee-ykl-omyydc6dBziIVg _model_server_result.datetime_utc '2024-11-30 19:09:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":3013}' # _entry.id 6UZ0 # _exptl.entry_id 6UZ0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UZ0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 3001 NAG 2 n B NAG 2 B 2 NAG A 3002 NAG 3 n C NAG 1 C 1 NAG A 3004 NAG 3 n C NAG 2 C 2 NAG A 3005 NAG 3 n C BMA 3 C 3 BMA A 3006 BMA 2 n D NAG 1 D 1 NAG A 3007 NAG 2 n D NAG 2 D 2 NAG A 3008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 281 A CYS 281 1_555 A SG CYS 336 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? disulf ? disulf2 A SG CYS 327 A CYS 327 1_555 A SG CYS 342 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 712 A CYS 909 1_555 A SG CYS 721 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 319 A ASN 319 1_555 E C1 NAG . A NAG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 329 A ASN 329 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale3 A ND2 ASN 1064 A ASN 1382 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 1072 A ASN 1390 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C26 9Z9 sing 125 n n O25 C24 9Z9 sing 126 n n C50 O49 9Z9 sing 127 n n O49 C48 9Z9 sing 128 n n C24 C23 9Z9 sing 129 n n C48 C23 9Z9 sing 130 n n C23 C22 9Z9 sing 131 n n C22 C21 9Z9 sing 132 n n C21 O20 9Z9 sing 133 n n O20 C17 9Z9 sing 134 n n C17 C18 9Z9 sing 135 n n C17 C16 9Z9 sing 136 n n C18 C19 9Z9 sing 137 n n C16 C13 9Z9 sing 138 n n C19 C11 9Z9 sing 139 n n C13 C11 9Z9 sing 140 n n C13 C14 9Z9 doub 141 n n C11 C12 9Z9 sing 142 n n C11 C08 9Z9 sing 143 n n C14 C15 9Z9 sing 144 n n C08 C09 9Z9 sing 145 n n C08 C07 9Z9 sing 146 n n C15 C07 9Z9 sing 147 n n C09 C10 9Z9 sing 148 n n C07 C06 9Z9 sing 149 n n C10 C02 9Z9 sing 150 n n C06 C02 9Z9 sing 151 n n C06 C05 9Z9 sing 152 n n C02 C01 9Z9 sing 153 n n C02 C03 9Z9 sing 154 n n C05 C04 9Z9 sing 155 n n C03 C04 9Z9 sing 156 n n C03 C74 9Z9 sing 157 n n C04 O72 9Z9 sing 158 n n C74 C75 9Z9 sing 159 n n C74 C73 9Z9 sing 160 n n O72 C73 9Z9 sing 161 n n C73 O80 9Z9 sing 162 n n C73 C76 9Z9 sing 163 n n O80 C79 9Z9 sing 164 n n C76 C77 9Z9 sing 165 n n C79 C78 9Z9 sing 166 n n C77 C78 9Z9 sing 167 n n C78 C81 9Z9 sing 168 n n C01 H1 9Z9 sing 169 n n C01 H2 9Z9 sing 170 n n C01 H3 9Z9 sing 171 n n C03 H4 9Z9 sing 172 n n C04 H5 9Z9 sing 173 n n C05 H6 9Z9 sing 174 n n C05 H7 9Z9 sing 175 n n C06 H8 9Z9 sing 176 n n C07 H9 9Z9 sing 177 n n C08 H10 9Z9 sing 178 n n C09 H11 9Z9 sing 179 n n C09 H12 9Z9 sing 180 n n C10 H13 9Z9 sing 181 n n C10 H14 9Z9 sing 182 n n C12 H15 9Z9 sing 183 n n C12 H16 9Z9 sing 184 n n C12 H17 9Z9 sing 185 n n C14 H18 9Z9 sing 186 n n C15 H19 9Z9 sing 187 n n C15 H20 9Z9 sing 188 n n C16 H21 9Z9 sing 189 n n C16 H22 9Z9 sing 190 n n C17 H23 9Z9 sing 191 n n C18 H24 9Z9 sing 192 n n C18 H25 9Z9 sing 193 n n C19 H26 9Z9 sing 194 n n C19 H27 9Z9 sing 195 n n C21 H28 9Z9 sing 196 n n C21 H29 9Z9 sing 197 n n C22 H30 9Z9 sing 198 n n C22 H31 9Z9 sing 199 n n C23 H32 9Z9 sing 200 n n C24 H33 9Z9 sing 201 n n C24 H34 9Z9 sing 202 n n C26 H35 9Z9 sing 203 n n C26 H36 9Z9 sing 204 n n C26 H37 9Z9 sing 205 n n C48 H38 9Z9 sing 206 n n C48 H39 9Z9 sing 207 n n C50 H40 9Z9 sing 208 n n C50 H41 9Z9 sing 209 n n C50 H42 9Z9 sing 210 n n C74 H43 9Z9 sing 211 n n C75 H44 9Z9 sing 212 n n C75 H45 9Z9 sing 213 n n C75 H46 9Z9 sing 214 n n C76 H47 9Z9 sing 215 n n C76 H48 9Z9 sing 216 n n C77 H49 9Z9 sing 217 n n C77 H50 9Z9 sing 218 n n C78 H51 9Z9 sing 219 n n C79 H52 9Z9 sing 220 n n C79 H53 9Z9 sing 221 n n C81 H54 9Z9 sing 222 n n C81 H55 9Z9 sing 223 n n C81 H56 9Z9 sing 224 n n # _atom_sites.entry_id 6UZ0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 3003 3003 NAG NAG . F 4 NAG A 1 3009 3009 NAG NAG . G 5 9Z9 A 1 3010 3101 9Z9 9Z9 . H 5 9Z9 A 1 3011 3102 9Z9 9Z9 . I 5 9Z9 A 1 3012 3103 9Z9 9Z9 . J 5 9Z9 A 1 3013 3104 9Z9 9Z9 . K 5 9Z9 A 1 3014 3105 9Z9 9Z9 . L 6 6OU A 1 3015 3201 6OU 6OU . M 6 6OU A 1 3016 3202 6OU 6OU . N 6 6OU A 1 3017 3203 6OU 6OU . O 6 6OU A 1 3018 3204 6OU 6OU . P 6 6OU A 1 3019 3205 6OU 6OU . Q 6 6OU A 1 3020 3206 6OU 6OU . R 6 6OU A 1 3021 3207 6OU 6OU . S 6 6OU A 1 3022 3208 6OU 6OU . T 6 6OU A 1 3023 3209 6OU 6OU . U 6 6OU A 1 3024 3210 6OU 6OU . V 6 6OU A 1 3025 3211 6OU 6OU . W 7 K4D A 1 3026 1 K4D K4D . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . J 5 154.233 116.804 123.645 1 65.93 ? C01 9Z9 3013 A 1 HETATM 2 C C02 9Z9 . . . J 5 153.375 118.072 123.699 1 65.93 ? C02 9Z9 3013 A 1 HETATM 3 C C03 9Z9 . . . J 5 153.905 118.861 125.074 1 65.93 ? C03 9Z9 3013 A 1 HETATM 4 C C04 9Z9 . . . J 5 155.24 119.31 124.802 1 65.93 ? C04 9Z9 3013 A 1 HETATM 5 C C05 9Z9 . . . J 5 155.396 119.237 123.035 1 65.93 ? C05 9Z9 3013 A 1 HETATM 6 C C06 9Z9 . . . J 5 153.873 119.049 122.578 1 65.93 ? C06 9Z9 3013 A 1 HETATM 7 C C07 9Z9 . . . J 5 153.518 118.826 121.513 1 65.93 ? C07 9Z9 3013 A 1 HETATM 8 C C08 9Z9 . . . J 5 152.196 118.657 121.511 1 65.93 ? C08 9Z9 3013 A 1 HETATM 9 C C09 9Z9 . . . J 5 151.837 117.487 122.384 1 65.93 ? C09 9Z9 3013 A 1 HETATM 10 C C10 9Z9 . . . J 5 152.222 117.676 123.593 1 65.93 ? C10 9Z9 3013 A 1 HETATM 11 C C11 9Z9 . . . J 5 151.595 118.423 119.896 1 65.93 ? C11 9Z9 3013 A 1 HETATM 12 C C12 9Z9 . . . J 5 152.001 117.026 119.424 1 65.93 ? C12 9Z9 3013 A 1 HETATM 13 C C13 9Z9 . . . J 5 152.031 119.219 119.157 1 65.93 ? C13 9Z9 3013 A 1 HETATM 14 C C14 9Z9 . . . J 5 153.285 119.501 119.259 1 65.93 ? C14 9Z9 3013 A 1 HETATM 15 C C15 9Z9 . . . J 5 153.899 119.649 120.754 1 65.93 ? C15 9Z9 3013 A 1 HETATM 16 C C16 9Z9 . . . J 5 151.274 119.316 117.748 1 65.93 ? C16 9Z9 3013 A 1 HETATM 17 C C17 9Z9 . . . J 5 149.705 119.441 117.917 1 65.93 ? C17 9Z9 3013 A 1 HETATM 18 C C18 9Z9 . . . J 5 149.232 118.488 118.668 1 65.93 ? C18 9Z9 3013 A 1 HETATM 19 C C19 9Z9 . . . J 5 149.89 118.455 119.996 1 65.93 ? C19 9Z9 3013 A 1 HETATM 20 O O72 9Z9 . . . J 5 156.123 118.399 125.552 1 65.93 ? O72 9Z9 3013 A 1 HETATM 21 C C73 9Z9 . . . J 5 155.468 118.231 126.699 1 65.93 ? C73 9Z9 3013 A 1 HETATM 22 C C74 9Z9 . . . J 5 154.016 117.972 126.155 1 65.93 ? C74 9Z9 3013 A 1 HETATM 23 C C75 9Z9 . . . J 5 152.864 118.276 127.152 1 65.93 ? C75 9Z9 3013 A 1 HETATM 24 C C76 9Z9 . . . J 5 156.01 116.972 127.451 1 65.93 ? C76 9Z9 3013 A 1 HETATM 25 C C77 9Z9 . . . J 5 155.784 116.921 128.905 1 65.93 ? C77 9Z9 3013 A 1 HETATM 26 C C78 9Z9 . . . J 5 155.303 118.201 129.466 1 65.93 ? C78 9Z9 3013 A 1 HETATM 27 C C79 9Z9 . . . J 5 156.076 119.37 128.803 1 65.93 ? C79 9Z9 3013 A 1 HETATM 28 O O80 9Z9 . . . J 5 155.59 119.506 127.434 1 65.93 ? O80 9Z9 3013 A 1 HETATM 29 C C81 9Z9 . . . J 5 155.425 118.251 131.017 1 65.93 ? C81 9Z9 3013 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #