data_6UZ0 # _model_server_result.job_id 4Kx6incQwGsgpGceYSDWGg _model_server_result.datetime_utc '2024-10-25 20:28:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":3023}' # _entry.id 6UZ0 # _exptl.entry_id 6UZ0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UZ0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 3001 NAG 2 n B NAG 2 B 2 NAG A 3002 NAG 3 n C NAG 1 C 1 NAG A 3004 NAG 3 n C NAG 2 C 2 NAG A 3005 NAG 3 n C BMA 3 C 3 BMA A 3006 BMA 2 n D NAG 1 D 1 NAG A 3007 NAG 2 n D NAG 2 D 2 NAG A 3008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 281 A CYS 281 1_555 A SG CYS 336 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? disulf ? disulf2 A SG CYS 327 A CYS 327 1_555 A SG CYS 342 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 712 A CYS 909 1_555 A SG CYS 721 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 319 A ASN 319 1_555 E C1 NAG . A NAG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 329 A ASN 329 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale3 A ND2 ASN 1064 A ASN 1382 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 1072 A ASN 1390 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6UZ0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 3003 3003 NAG NAG . F 4 NAG A 1 3009 3009 NAG NAG . G 5 9Z9 A 1 3010 3101 9Z9 9Z9 . H 5 9Z9 A 1 3011 3102 9Z9 9Z9 . I 5 9Z9 A 1 3012 3103 9Z9 9Z9 . J 5 9Z9 A 1 3013 3104 9Z9 9Z9 . K 5 9Z9 A 1 3014 3105 9Z9 9Z9 . L 6 6OU A 1 3015 3201 6OU 6OU . M 6 6OU A 1 3016 3202 6OU 6OU . N 6 6OU A 1 3017 3203 6OU 6OU . O 6 6OU A 1 3018 3204 6OU 6OU . P 6 6OU A 1 3019 3205 6OU 6OU . Q 6 6OU A 1 3020 3206 6OU 6OU . R 6 6OU A 1 3021 3207 6OU 6OU . S 6 6OU A 1 3022 3208 6OU 6OU . T 6 6OU A 1 3023 3209 6OU 6OU . U 6 6OU A 1 3024 3210 6OU 6OU . V 6 6OU A 1 3025 3211 6OU 6OU . W 7 K4D A 1 3026 1 K4D K4D . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 6OU . . . T 6 154.324 154.703 137.436 1 44.05 ? C13 6OU 3023 A 1 HETATM 2 C C14 6OU . . . T 6 155.233 154.296 138.592 1 44.05 ? C14 6OU 3023 A 1 HETATM 3 C C15 6OU . . . T 6 154.977 155.233 139.766 1 44.05 ? C15 6OU 3023 A 1 HETATM 4 C C16 6OU . . . T 6 155.774 154.794 140.991 1 44.05 ? C16 6OU 3023 A 1 HETATM 5 O O17 6OU . . . T 6 156.394 155.588 141.609 1 44.05 ? O17 6OU 3023 A 1 HETATM 6 O O18 6OU . . . T 6 155.775 153.459 141.398 1 44.05 ? O18 6OU 3023 A 1 HETATM 7 C C19 6OU . . . T 6 156.288 153.281 142.688 1 44.05 ? C19 6OU 3023 A 1 HETATM 8 C C20 6OU . . . T 6 156.465 151.795 143.004 1 44.05 ? C20 6OU 3023 A 1 HETATM 9 C C21 6OU . . . T 6 157.488 151.653 144.129 1 44.05 ? C21 6OU 3023 A 1 HETATM 10 O O22 6OU . . . T 6 156.873 151.94 145.353 1 44.05 ? O22 6OU 3023 A 1 HETATM 11 P P23 6OU . . . T 6 157.33 153.283 146.192 1 44.05 ? P23 6OU 3023 A 1 HETATM 12 O O24 6OU . . . T 6 156.873 153.173 147.625 1 44.05 ? O24 6OU 3023 A 1 HETATM 13 O O25 6OU . . . T 6 156.701 154.504 145.569 1 44.05 ? O25 6OU 3023 A 1 HETATM 14 O O26 6OU . . . T 6 158.97 153.419 146.161 1 44.05 ? O26 6OU 3023 A 1 HETATM 15 O O30 6OU . . . T 6 156.909 151.123 141.86 1 44.05 ? O30 6OU 3023 A 1 HETATM 16 C C31 6OU . . . T 6 156.219 149.945 141.565 1 44.05 ? C31 6OU 3023 A 1 HETATM 17 O O32 6OU . . . T 6 156.245 149.045 142.329 1 44.05 ? O32 6OU 3023 A 1 HETATM 18 C C33 6OU . . . T 6 155.446 149.815 140.256 1 44.05 ? C33 6OU 3023 A 1 HETATM 19 C C34 6OU . . . T 6 155.023 148.362 140.056 1 44.05 ? C34 6OU 3023 A 1 HETATM 20 C C35 6OU . . . T 6 154.269 148.202 138.737 1 44.05 ? C35 6OU 3023 A 1 HETATM 21 C C36 6OU . . . T 6 154.178 146.719 138.383 1 44.05 ? C36 6OU 3023 A 1 HETATM 22 C C37 6OU . . . T 6 153.145 146.505 137.281 1 44.05 ? C37 6OU 3023 A 1 HETATM 23 C C38 6OU . . . T 6 153.302 145.105 136.692 1 44.05 ? C38 6OU 3023 A 1 HETATM 24 C C39 6OU . . . T 6 152.451 144.996 135.431 1 44.05 ? C39 6OU 3023 A 1 HETATM 25 C C40 6OU . . . T 6 153.043 143.951 134.491 1 44.05 ? C40 6OU 3023 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #