data_6UZ8 # _model_server_result.job_id w1k6ERIP-dyrzi1R_rBlGQ _model_server_result.datetime_utc '2024-12-27 02:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 6UZ8 # _exptl.entry_id 6UZ8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 594.781 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[(2~{S})-2-decanoyloxy-3-dodecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UZ8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 O N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 169 A CYS 253 1_555 A SG CYS 174 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 169 D CYS 253 1_555 B SG CYS 174 D CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 C SG CYS 169 B CYS 253 1_555 C SG CYS 174 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 169 C CYS 253 1_555 D SG CYS 174 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C30 H61 N O8 P 1' _chem_comp.formula_weight 594.781 _chem_comp.id SBM _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[(2~{S})-2-decanoyloxy-3-dodecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 SBM sing 325 n n C21 C20 SBM sing 326 n n C20 C19 SBM sing 327 n n C40 C39 SBM sing 328 n n C18 C19 SBM sing 329 n n C18 C17 SBM sing 330 n n C39 C38 SBM sing 331 n n C17 C16 SBM sing 332 n n C16 C15 SBM sing 333 n n C38 C37 SBM sing 334 n n C37 C36 SBM sing 335 n n C15 C14 SBM sing 336 n n C14 C13 SBM sing 337 n n C36 C35 SBM sing 338 n n C35 C34 SBM sing 339 n n C13 C12 SBM sing 340 n n C12 C11 SBM sing 341 n n C34 C33 SBM sing 342 n n C33 C32 SBM sing 343 n n C32 C31 SBM sing 344 n n C11 O11 SBM doub 345 n n C11 O3 SBM sing 346 n n O3 C3 SBM sing 347 n n C31 O2 SBM sing 348 n n C31 O31 SBM doub 349 n n O2 C2 SBM sing 350 n n C3 C2 SBM sing 351 n n C2 C1 SBM sing 352 n n C1 O3P SBM sing 353 n n C6 N1 SBM sing 354 n n C5 N1 SBM sing 355 n n C5 C4 SBM sing 356 n n O3P P SBM sing 357 n n O5 C4 SBM sing 358 n n O5 P SBM sing 359 n n N1 C7 SBM sing 360 n n N1 C8 SBM sing 361 n n P O1 SBM doub 362 n n P O4 SBM sing 363 n n C12 H1 SBM sing 364 n n C12 H2 SBM sing 365 n n C13 H3 SBM sing 366 n n C13 H4 SBM sing 367 n n C14 H5 SBM sing 368 n n C15 H6 SBM sing 369 n n C16 H7 SBM sing 370 n n C16 H8 SBM sing 371 n n C17 H9 SBM sing 372 n n C17 H10 SBM sing 373 n n C18 H11 SBM sing 374 n n C18 H12 SBM sing 375 n n C19 H13 SBM sing 376 n n C19 H14 SBM sing 377 n n C20 H15 SBM sing 378 n n C20 H16 SBM sing 379 n n C21 H17 SBM sing 380 n n C21 H18 SBM sing 381 n n C22 H19 SBM sing 382 n n C22 H20 SBM sing 383 n n C22 H21 SBM sing 384 n n C3 H22 SBM sing 385 n n C3 H23 SBM sing 386 n n C2 H24 SBM sing 387 n n C1 H25 SBM sing 388 n n C1 H26 SBM sing 389 n n C32 H27 SBM sing 390 n n C32 H28 SBM sing 391 n n C33 H29 SBM sing 392 n n C33 H30 SBM sing 393 n n C34 H31 SBM sing 394 n n C35 H32 SBM sing 395 n n C36 H33 SBM sing 396 n n C36 H34 SBM sing 397 n n C37 H35 SBM sing 398 n n C37 H36 SBM sing 399 n n C38 H37 SBM sing 400 n n C38 H38 SBM sing 401 n n C39 H39 SBM sing 402 n n C39 H40 SBM sing 403 n n C40 H41 SBM sing 404 n n C40 H42 SBM sing 405 n n C40 H43 SBM sing 406 n n O4 H44 SBM sing 407 n n C4 H45 SBM sing 408 n n C4 H46 SBM sing 409 n n C5 H47 SBM sing 410 n n C5 H48 SBM sing 411 n n C6 H49 SBM sing 412 n n C6 H50 SBM sing 413 n n C6 H51 SBM sing 414 n n C7 H52 SBM sing 415 n n C7 H53 SBM sing 416 n n C7 H54 SBM sing 417 n n C8 H55 SBM sing 418 n n C8 H56 SBM sing 419 n n C8 H57 SBM sing 420 n n C14 H58 SBM sing 421 n n C15 H59 SBM sing 422 n n C34 H60 SBM sing 423 n n C35 H61 SBM sing 424 n n # _atom_sites.entry_id 6UZ8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SBM A 1 1001 2 SBM 6O8 . F 3 Y01 A 1 1002 3 Y01 Y01 . G 4 R0D A 1 1003 1 R0D LIG . H 3 Y01 A 1 1004 4 Y01 Y01 . I 2 SBM D 1 1001 2 SBM 6O8 . J 3 Y01 D 1 1002 3 Y01 Y01 . K 4 R0D D 1 1003 1 R0D LIG . L 3 Y01 D 1 1004 4 Y01 Y01 . M 4 R0D B 1 1001 1 R0D LIG . N 3 Y01 B 1 1002 4 Y01 Y01 . O 2 SBM B 1 1003 2 SBM 6O8 . P 3 Y01 B 1 1004 3 Y01 Y01 . Q 4 R0D C 1 1001 1 R0D LIG . R 3 Y01 C 1 1002 4 Y01 Y01 . S 2 SBM C 1 1003 2 SBM 6O8 . T 3 Y01 C 1 1004 3 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 SBM . . . E 2 175.934 178.018 150.96 1 60.18 ? O11 SBM 1001 A 1 HETATM 2 C C11 SBM . . . E 2 176.441 178.97 150.412 1 60.18 ? C11 SBM 1001 A 1 HETATM 3 C C12 SBM . . . E 2 176.672 179.055 148.895 1 60.18 ? C12 SBM 1001 A 1 HETATM 4 C C13 SBM . . . E 2 177.217 177.742 148.256 1 60.18 ? C13 SBM 1001 A 1 HETATM 5 C C14 SBM . . . E 2 177.483 177.813 146.72 1 60.18 ? C14 SBM 1001 A 1 HETATM 6 C C15 SBM . . . E 2 178.179 176.561 146.095 1 60.18 ? C15 SBM 1001 A 1 HETATM 7 C C16 SBM . . . E 2 178.722 176.716 144.645 1 60.18 ? C16 SBM 1001 A 1 HETATM 8 C C17 SBM . . . E 2 178.747 175.401 143.81 1 60.18 ? C17 SBM 1001 A 1 HETATM 9 C C18 SBM . . . E 2 179.94 175.22 142.834 1 60.18 ? C18 SBM 1001 A 1 HETATM 10 C C19 SBM . . . E 2 180.58 173.807 142.856 1 60.18 ? C19 SBM 1001 A 1 HETATM 11 C C20 SBM . . . E 2 181.109 173.292 141.501 1 60.18 ? C20 SBM 1001 A 1 HETATM 12 C C21 SBM . . . E 2 181.14 171.754 141.415 1 60.18 ? C21 SBM 1001 A 1 HETATM 13 C C22 SBM . . . E 2 182.334 171.187 140.653 1 60.18 ? C22 SBM 1001 A 1 HETATM 14 O O3 SBM . . . E 2 176.831 180.054 151.165 1 60.18 ? O3 SBM 1001 A 1 HETATM 15 C C3 SBM . . . E 2 176.367 180.174 152.515 1 60.18 ? C3 SBM 1001 A 1 HETATM 16 C C2 SBM . . . E 2 176.004 181.674 152.868 1 60.18 ? C2 SBM 1001 A 1 HETATM 17 C C1 SBM . . . E 2 177.209 182.361 153.563 1 60.18 ? C1 SBM 1001 A 1 HETATM 18 O O3P SBM . . . E 2 177.338 181.852 154.843 1 60.18 ? O3P SBM 1001 A 1 HETATM 19 P P SBM . . . E 2 178.368 182.541 155.94 1 60.18 ? P SBM 1001 A 1 HETATM 20 O O2 SBM . . . E 2 175.734 182.391 151.64 1 60.18 ? O2 SBM 1001 A 1 HETATM 21 C C31 SBM . . . E 2 174.78 183.391 151.57 1 60.18 ? C31 SBM 1001 A 1 HETATM 22 O O31 SBM . . . E 2 174.726 184.216 152.455 1 60.18 ? O31 SBM 1001 A 1 HETATM 23 C C32 SBM . . . E 2 173.817 183.429 150.374 1 60.18 ? C32 SBM 1001 A 1 HETATM 24 C C33 SBM . . . E 2 173.664 184.859 149.761 1 60.18 ? C33 SBM 1001 A 1 HETATM 25 C C34 SBM . . . E 2 172.261 185.251 149.214 1 60.18 ? C34 SBM 1001 A 1 HETATM 26 C C35 SBM . . . E 2 172.211 185.684 147.708 1 60.18 ? C35 SBM 1001 A 1 HETATM 27 C C36 SBM . . . E 2 173.561 185.667 146.953 1 60.18 ? C36 SBM 1001 A 1 HETATM 28 C C37 SBM . . . E 2 173.472 185.482 145.419 1 60.18 ? C37 SBM 1001 A 1 HETATM 29 C C38 SBM . . . E 2 174.671 184.716 144.828 1 60.18 ? C38 SBM 1001 A 1 HETATM 30 C C39 SBM . . . E 2 174.721 184.703 143.298 1 60.18 ? C39 SBM 1001 A 1 HETATM 31 C C40 SBM . . . E 2 175.949 183.982 142.754 1 60.18 ? C40 SBM 1001 A 1 HETATM 32 O O1 SBM . . . E 2 179.564 181.669 156.13 1 60.18 ? O1 SBM 1001 A 1 HETATM 33 O O4 SBM . . . E 2 177.586 183.252 156.991 1 60.18 ? O4 SBM 1001 A 1 HETATM 34 O O5 SBM . . . E 2 179.103 183.927 155.107 1 60.18 ? O5 SBM 1001 A 1 HETATM 35 C C4 SBM . . . E 2 179.13 185.09 155.804 1 60.18 ? C4 SBM 1001 A 1 HETATM 36 C C5 SBM . . . E 2 179.497 186.195 154.781 1 60.18 ? C5 SBM 1001 A 1 HETATM 37 N N1 SBM . . . E 2 179.712 187.55 155.489 1 60.18 ? N1 SBM 1001 A 1 HETATM 38 C C6 SBM . . . E 2 180.018 188.607 154.449 1 60.18 ? C6 SBM 1001 A 1 HETATM 39 C C7 SBM . . . E 2 178.471 187.975 156.257 1 60.18 ? C7 SBM 1001 A 1 HETATM 40 C C8 SBM . . . E 2 180.891 187.453 156.442 1 60.18 ? C8 SBM 1001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #