data_6UZ8 # _model_server_result.job_id gQIKTD3Y0ERFE_C7_kFKUg _model_server_result.datetime_utc '2024-12-27 01:32:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1003}' # _entry.id 6UZ8 # _exptl.entry_id 6UZ8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 382.84 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(5-chloro-1'H-spiro[indole-3,4'-piperidin]-1'-yl)[(2R)-2,3-dihydro-1,4-benzodioxin-2-yl]methanone" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UZ8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N ? 4 M N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 169 A CYS 253 1_555 A SG CYS 174 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 169 D CYS 253 1_555 B SG CYS 174 D CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 C SG CYS 169 B CYS 253 1_555 C SG CYS 174 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 169 C CYS 253 1_555 D SG CYS 174 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C21 H19 Cl N2 O3' _chem_comp.formula_weight 382.84 _chem_comp.id R0D _chem_comp.mon_nstd_flag . _chem_comp.name "(5-chloro-1'H-spiro[indole-3,4'-piperidin]-1'-yl)[(2R)-2,3-dihydro-1,4-benzodioxin-2-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N06 C07 R0D doub 275 n n N06 C05 R0D sing 276 n n C07 C08 R0D sing 277 n n C04 C05 R0D doub 278 n y C04 C03 R0D sing 279 n y C05 C26 R0D sing 280 n y C25 C24 R0D sing 281 n n C25 C08 R0D sing 282 n n C24 N11 R0D sing 283 n n C03 C02 R0D doub 284 n y C08 C26 R0D sing 285 n n C08 C09 R0D sing 286 n n C26 C27 R0D doub 287 n y C02 C27 R0D sing 288 n y C02 CL01 R0D sing 289 n n N11 C10 R0D sing 290 n n N11 C12 R0D sing 291 n n C09 C10 R0D sing 292 n n O23 C12 R0D doub 293 n n C12 C13 R0D sing 294 n n C13 C14 R0D sing 295 n n C13 O22 R0D sing 296 n n C14 O15 R0D sing 297 n n O22 C21 R0D sing 298 n n O15 C16 R0D sing 299 n n C21 C16 R0D doub 300 n y C21 C20 R0D sing 301 n y C16 C17 R0D sing 302 n y C20 C19 R0D doub 303 n y C17 C18 R0D doub 304 n y C19 C18 R0D sing 305 n y C10 H1 R0D sing 306 n n C10 H2 R0D sing 307 n n C13 H3 R0D sing 308 n n C17 H4 R0D sing 309 n n C20 H5 R0D sing 310 n n C24 H6 R0D sing 311 n n C24 H7 R0D sing 312 n n C03 H8 R0D sing 313 n n C04 H9 R0D sing 314 n n C07 H10 R0D sing 315 n n C09 H11 R0D sing 316 n n C09 H12 R0D sing 317 n n C14 H13 R0D sing 318 n n C14 H14 R0D sing 319 n n C18 H15 R0D sing 320 n n C19 H16 R0D sing 321 n n C25 H17 R0D sing 322 n n C25 H18 R0D sing 323 n n C27 H19 R0D sing 324 n n # _atom_sites.entry_id 6UZ8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SBM A 1 1001 2 SBM 6O8 . F 3 Y01 A 1 1002 3 Y01 Y01 . G 4 R0D A 1 1003 1 R0D LIG . H 3 Y01 A 1 1004 4 Y01 Y01 . I 2 SBM D 1 1001 2 SBM 6O8 . J 3 Y01 D 1 1002 3 Y01 Y01 . K 4 R0D D 1 1003 1 R0D LIG . L 3 Y01 D 1 1004 4 Y01 Y01 . M 4 R0D B 1 1001 1 R0D LIG . N 3 Y01 B 1 1002 4 Y01 Y01 . O 2 SBM B 1 1003 2 SBM 6O8 . P 3 Y01 B 1 1004 3 Y01 Y01 . Q 4 R0D C 1 1001 1 R0D LIG . R 3 Y01 C 1 1002 4 Y01 Y01 . S 2 SBM C 1 1003 2 SBM 6O8 . T 3 Y01 C 1 1004 3 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 R0D . . . K 4 145.54 156.779 130.939 1 41.83 ? C10 R0D 1003 D 1 HETATM 2 C C13 R0D . . . K 4 147.882 157.084 132.897 1 41.83 ? C13 R0D 1003 D 1 HETATM 3 C C17 R0D . . . K 4 148.404 155.999 136.829 1 41.83 ? C17 R0D 1003 D 1 HETATM 4 C C20 R0D . . . K 4 145.984 157.151 135.992 1 41.83 ? C20 R0D 1003 D 1 HETATM 5 C C21 R0D . . . K 4 147.069 157.114 135.111 1 41.83 ? C21 R0D 1003 D 1 HETATM 6 C C24 R0D . . . K 4 146.575 158.332 129.366 1 41.83 ? C24 R0D 1003 D 1 HETATM 7 C C26 R0D . . . K 4 142.798 159.278 129.664 1 41.83 ? C26 R0D 1003 D 1 HETATM 8 C C02 R0D . . . K 4 141.362 161.012 130.425 1 41.83 ? C02 R0D 1003 D 1 HETATM 9 C C03 R0D . . . K 4 140.449 160.801 129.415 1 41.83 ? C03 R0D 1003 D 1 HETATM 10 C C04 R0D . . . K 4 140.699 159.799 128.485 1 41.83 ? C04 R0D 1003 D 1 HETATM 11 C C05 R0D . . . K 4 141.869 159.051 128.619 1 41.83 ? C05 R0D 1003 D 1 HETATM 12 C C07 R0D . . . K 4 143.5 157.383 128.402 1 41.83 ? C07 R0D 1003 D 1 HETATM 13 C C08 R0D . . . K 4 143.972 158.324 129.555 1 41.83 ? C08 R0D 1003 D 1 HETATM 14 C C09 R0D . . . K 4 144.192 157.53 130.845 1 41.83 ? C09 R0D 1003 D 1 HETATM 15 C C12 R0D . . . K 4 147.797 157.824 131.539 1 41.83 ? C12 R0D 1003 D 1 HETATM 16 C C14 R0D . . . K 4 149.275 157.252 133.537 1 41.83 ? C14 R0D 1003 D 1 HETATM 17 C C16 R0D . . . K 4 148.259 156.536 135.556 1 41.83 ? C16 R0D 1003 D 1 HETATM 18 C C18 R0D . . . K 4 147.32 156.04 137.692 1 41.83 ? C18 R0D 1003 D 1 HETATM 19 C C19 R0D . . . K 4 146.12 156.614 137.271 1 41.83 ? C19 R0D 1003 D 1 HETATM 20 C C25 R0D . . . K 4 145.245 159.093 129.224 1 41.83 ? C25 R0D 1003 D 1 HETATM 21 C C27 R0D . . . K 4 142.536 160.275 130.574 1 41.83 ? C27 R0D 1003 D 1 HETATM 22 N N06 R0D . . . K 4 142.312 158.023 127.823 1 41.83 ? N06 R0D 1003 D 1 HETATM 23 N N11 R0D . . . K 4 146.71 157.656 130.662 1 41.83 ? N11 R0D 1003 D 1 HETATM 24 O O15 R0D . . . K 4 149.354 156.472 134.728 1 41.83 ? O15 R0D 1003 D 1 HETATM 25 O O22 R0D . . . K 4 146.946 157.642 133.836 1 41.83 ? O22 R0D 1003 D 1 HETATM 26 O O23 R0D . . . K 4 148.704 158.57 131.215 1 41.83 ? O23 R0D 1003 D 1 HETATM 27 CL CL01 R0D . . . K 4 141.021 162.262 131.562 1 41.83 ? CL01 R0D 1003 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #