data_6UZ8
#
_model_server_result.job_id            CrgXcnPUguC9PPhWIahKug 
_model_server_result.datetime_utc      '2024-12-27 02:03:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uz8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1003}' 
#
_entry.id    6UZ8 
#
_exptl.entry_id    6UZ8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              594.781 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[[(2~{S})-2-decanoyloxy-3-dodecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UZ8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UZ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 O N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 169 A CYS 253 1_555 A SG CYS 174 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 169 D CYS 253 1_555 B SG CYS 174 D CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 C SG CYS 169 B CYS 253 1_555 C SG CYS 174 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 D SG CYS 169 C CYS 253 1_555 D SG CYS 174 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C30 H61 N O8 P 1' 
_chem_comp.formula_weight    594.781 
_chem_comp.id                SBM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[[(2~{S})-2-decanoyloxy-3-dodecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C21 SBM sing 325 n n 
C21 C20 SBM sing 326 n n 
C20 C19 SBM sing 327 n n 
C40 C39 SBM sing 328 n n 
C18 C19 SBM sing 329 n n 
C18 C17 SBM sing 330 n n 
C39 C38 SBM sing 331 n n 
C17 C16 SBM sing 332 n n 
C16 C15 SBM sing 333 n n 
C38 C37 SBM sing 334 n n 
C37 C36 SBM sing 335 n n 
C15 C14 SBM sing 336 n n 
C14 C13 SBM sing 337 n n 
C36 C35 SBM sing 338 n n 
C35 C34 SBM sing 339 n n 
C13 C12 SBM sing 340 n n 
C12 C11 SBM sing 341 n n 
C34 C33 SBM sing 342 n n 
C33 C32 SBM sing 343 n n 
C32 C31 SBM sing 344 n n 
C11 O11 SBM doub 345 n n 
C11 O3 SBM sing 346 n n 
O3 C3 SBM sing 347 n n 
C31 O2 SBM sing 348 n n 
C31 O31 SBM doub 349 n n 
O2 C2 SBM sing 350 n n 
C3 C2 SBM sing 351 n n 
C2 C1 SBM sing 352 n n 
C1 O3P SBM sing 353 n n 
C6 N1 SBM sing 354 n n 
C5 N1 SBM sing 355 n n 
C5 C4 SBM sing 356 n n 
O3P P SBM sing 357 n n 
O5 C4 SBM sing 358 n n 
O5 P SBM sing 359 n n 
N1 C7 SBM sing 360 n n 
N1 C8 SBM sing 361 n n 
P O1 SBM doub 362 n n 
P O4 SBM sing 363 n n 
C12 H1 SBM sing 364 n n 
C12 H2 SBM sing 365 n n 
C13 H3 SBM sing 366 n n 
C13 H4 SBM sing 367 n n 
C14 H5 SBM sing 368 n n 
C15 H6 SBM sing 369 n n 
C16 H7 SBM sing 370 n n 
C16 H8 SBM sing 371 n n 
C17 H9 SBM sing 372 n n 
C17 H10 SBM sing 373 n n 
C18 H11 SBM sing 374 n n 
C18 H12 SBM sing 375 n n 
C19 H13 SBM sing 376 n n 
C19 H14 SBM sing 377 n n 
C20 H15 SBM sing 378 n n 
C20 H16 SBM sing 379 n n 
C21 H17 SBM sing 380 n n 
C21 H18 SBM sing 381 n n 
C22 H19 SBM sing 382 n n 
C22 H20 SBM sing 383 n n 
C22 H21 SBM sing 384 n n 
C3 H22 SBM sing 385 n n 
C3 H23 SBM sing 386 n n 
C2 H24 SBM sing 387 n n 
C1 H25 SBM sing 388 n n 
C1 H26 SBM sing 389 n n 
C32 H27 SBM sing 390 n n 
C32 H28 SBM sing 391 n n 
C33 H29 SBM sing 392 n n 
C33 H30 SBM sing 393 n n 
C34 H31 SBM sing 394 n n 
C35 H32 SBM sing 395 n n 
C36 H33 SBM sing 396 n n 
C36 H34 SBM sing 397 n n 
C37 H35 SBM sing 398 n n 
C37 H36 SBM sing 399 n n 
C38 H37 SBM sing 400 n n 
C38 H38 SBM sing 401 n n 
C39 H39 SBM sing 402 n n 
C39 H40 SBM sing 403 n n 
C40 H41 SBM sing 404 n n 
C40 H42 SBM sing 405 n n 
C40 H43 SBM sing 406 n n 
O4 H44 SBM sing 407 n n 
C4 H45 SBM sing 408 n n 
C4 H46 SBM sing 409 n n 
C5 H47 SBM sing 410 n n 
C5 H48 SBM sing 411 n n 
C6 H49 SBM sing 412 n n 
C6 H50 SBM sing 413 n n 
C6 H51 SBM sing 414 n n 
C7 H52 SBM sing 415 n n 
C7 H53 SBM sing 416 n n 
C7 H54 SBM sing 417 n n 
C8 H55 SBM sing 418 n n 
C8 H56 SBM sing 419 n n 
C8 H57 SBM sing 420 n n 
C14 H58 SBM sing 421 n n 
C15 H59 SBM sing 422 n n 
C34 H60 SBM sing 423 n n 
C35 H61 SBM sing 424 n n 
#
_atom_sites.entry_id                     6UZ8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SBM A 1 1001 2 SBM 6O8 . 
F 3 Y01 A 1 1002 3 Y01 Y01 . 
G 4 R0D A 1 1003 1 R0D LIG . 
H 3 Y01 A 1 1004 4 Y01 Y01 . 
I 2 SBM D 1 1001 2 SBM 6O8 . 
J 3 Y01 D 1 1002 3 Y01 Y01 . 
K 4 R0D D 1 1003 1 R0D LIG . 
L 3 Y01 D 1 1004 4 Y01 Y01 . 
M 4 R0D B 1 1001 1 R0D LIG . 
N 3 Y01 B 1 1002 4 Y01 Y01 . 
O 2 SBM B 1 1003 2 SBM 6O8 . 
P 3 Y01 B 1 1004 3 Y01 Y01 . 
Q 4 R0D C 1 1001 1 R0D LIG . 
R 3 Y01 C 1 1002 4 Y01 Y01 . 
S 2 SBM C 1 1003 2 SBM 6O8 . 
T 3 Y01 C 1 1004 3 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O11 SBM . . . S 2 153.538 151.454 150.959 1 60.18 ? O11 SBM 1003 C 1 
HETATM 2 C C11 SBM . . . S 2 153.031 150.502 150.411 1 60.18 ? C11 SBM 1003 C 1 
HETATM 3 C C12 SBM . . . S 2 152.8 150.417 148.894 1 60.18 ? C12 SBM 1003 C 1 
HETATM 4 C C13 SBM . . . S 2 152.255 151.73 148.255 1 60.18 ? C13 SBM 1003 C 1 
HETATM 5 C C14 SBM . . . S 2 151.988 151.659 146.719 1 60.18 ? C14 SBM 1003 C 1 
HETATM 6 C C15 SBM . . . S 2 151.292 152.911 146.094 1 60.18 ? C15 SBM 1003 C 1 
HETATM 7 C C16 SBM . . . S 2 150.749 152.756 144.644 1 60.18 ? C16 SBM 1003 C 1 
HETATM 8 C C17 SBM . . . S 2 150.724 154.071 143.809 1 60.18 ? C17 SBM 1003 C 1 
HETATM 9 C C18 SBM . . . S 2 149.531 154.252 142.833 1 60.18 ? C18 SBM 1003 C 1 
HETATM 10 C C19 SBM . . . S 2 148.891 155.665 142.855 1 60.18 ? C19 SBM 1003 C 1 
HETATM 11 C C20 SBM . . . S 2 148.362 156.18 141.5 1 60.18 ? C20 SBM 1003 C 1 
HETATM 12 C C21 SBM . . . S 2 148.331 157.718 141.414 1 60.18 ? C21 SBM 1003 C 1 
HETATM 13 C C22 SBM . . . S 2 147.137 158.285 140.653 1 60.18 ? C22 SBM 1003 C 1 
HETATM 14 O O3 SBM . . . S 2 152.641 149.418 151.164 1 60.18 ? O3 SBM 1003 C 1 
HETATM 15 C C3 SBM . . . S 2 153.105 149.298 152.514 1 60.18 ? C3 SBM 1003 C 1 
HETATM 16 C C2 SBM . . . S 2 153.468 147.798 152.867 1 60.18 ? C2 SBM 1003 C 1 
HETATM 17 C C1 SBM . . . S 2 152.263 147.111 153.562 1 60.18 ? C1 SBM 1003 C 1 
HETATM 18 O O3P SBM . . . S 2 152.134 147.62 154.842 1 60.18 ? O3P SBM 1003 C 1 
HETATM 19 P P SBM . . . S 2 151.105 146.931 155.94 1 60.18 ? P SBM 1003 C 1 
HETATM 20 O O2 SBM . . . S 2 153.738 147.081 151.639 1 60.18 ? O2 SBM 1003 C 1 
HETATM 21 C C31 SBM . . . S 2 154.692 146.081 151.569 1 60.18 ? C31 SBM 1003 C 1 
HETATM 22 O O31 SBM . . . S 2 154.746 145.256 152.454 1 60.18 ? O31 SBM 1003 C 1 
HETATM 23 C C32 SBM . . . S 2 155.655 146.043 150.373 1 60.18 ? C32 SBM 1003 C 1 
HETATM 24 C C33 SBM . . . S 2 155.808 144.613 149.76 1 60.18 ? C33 SBM 1003 C 1 
HETATM 25 C C34 SBM . . . S 2 157.21 144.221 149.213 1 60.18 ? C34 SBM 1003 C 1 
HETATM 26 C C35 SBM . . . S 2 157.26 143.788 147.707 1 60.18 ? C35 SBM 1003 C 1 
HETATM 27 C C36 SBM . . . S 2 155.91 143.805 146.952 1 60.18 ? C36 SBM 1003 C 1 
HETATM 28 C C37 SBM . . . S 2 155.999 143.99 145.418 1 60.18 ? C37 SBM 1003 C 1 
HETATM 29 C C38 SBM . . . S 2 154.8 144.756 144.827 1 60.18 ? C38 SBM 1003 C 1 
HETATM 30 C C39 SBM . . . S 2 154.75 144.769 143.297 1 60.18 ? C39 SBM 1003 C 1 
HETATM 31 C C40 SBM . . . S 2 153.522 145.49 142.753 1 60.18 ? C40 SBM 1003 C 1 
HETATM 32 O O1 SBM . . . S 2 149.909 147.803 156.13 1 60.18 ? O1 SBM 1003 C 1 
HETATM 33 O O4 SBM . . . S 2 151.887 146.22 156.99 1 60.18 ? O4 SBM 1003 C 1 
HETATM 34 O O5 SBM . . . S 2 150.369 145.545 155.107 1 60.18 ? O5 SBM 1003 C 1 
HETATM 35 C C4 SBM . . . S 2 150.342 144.382 155.804 1 60.18 ? C4 SBM 1003 C 1 
HETATM 36 C C5 SBM . . . S 2 149.975 143.277 154.781 1 60.18 ? C5 SBM 1003 C 1 
HETATM 37 N N1 SBM . . . S 2 149.76 141.922 155.489 1 60.18 ? N1 SBM 1003 C 1 
HETATM 38 C C6 SBM . . . S 2 149.454 140.865 154.449 1 60.18 ? C6 SBM 1003 C 1 
HETATM 39 C C7 SBM . . . S 2 151.001 141.497 156.257 1 60.18 ? C7 SBM 1003 C 1 
HETATM 40 C C8 SBM . . . S 2 148.581 142.019 156.442 1 60.18 ? C8 SBM 1003 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#