data_6UZA
#
_model_server_result.job_id            EOhRgyt0kxARoMAPN98B_g 
_model_server_result.datetime_utc      '2025-08-31 16:22:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1002}' 
#
_entry.id    6UZA 
#
_exptl.entry_id    6UZA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              333.427 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-({(1R,2R)-2-[(3R)-3-aminopiperidin-1-yl]-2,3-dihydro-1H-inden-1-yl}oxy)benzonitrile 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UZA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 L N N 
? 2 Q N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 171 A CYS 255 1_555 A SG CYS 174 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 171 B CYS 255 1_555 B SG CYS 174 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 C SG CYS 171 C CYS 255 1_555 C SG CYS 174 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 D SG CYS 171 D CYS 255 1_555 D SG CYS 174 D CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C21 H23 N3 O' 
_chem_comp.formula_weight    333.427 
_chem_comp.id                R0G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-({(1R,2R)-2-[(3R)-3-aminopiperidin-1-yl]-2,3-dihydro-1H-inden-1-yl}oxy)benzonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C12 R0G doub 275 n y 
C11 C10 R0G sing 276 n y 
C12 C13 R0G sing 277 n y 
C09 C10 R0G sing 278 n n 
C09 C08 R0G sing 279 n n 
N01 C02 R0G sing 280 n n 
C10 C15 R0G doub 281 n y 
C02 C06 R0G sing 282 n n 
C02 C03 R0G sing 283 n n 
C06 N07 R0G sing 284 n n 
C13 C14 R0G doub 285 n y 
N07 C08 R0G sing 286 n n 
N07 C05 R0G sing 287 n n 
C15 C14 R0G sing 288 n y 
C15 C16 R0G sing 289 n n 
C08 C16 R0G sing 290 n n 
C03 C04 R0G sing 291 n n 
C16 O17 R0G sing 292 n n 
C04 C05 R0G sing 293 n n 
O17 C18 R0G sing 294 n n 
C19 C18 R0G doub 295 n y 
C19 C20 R0G sing 296 n y 
C18 C25 R0G sing 297 n y 
C20 C21 R0G doub 298 n y 
C25 C24 R0G doub 299 n y 
C21 C24 R0G sing 300 n y 
C21 C22 R0G sing 301 n n 
C22 N23 R0G trip 302 n n 
C13 H1 R0G sing 303 n n 
C20 H2 R0G sing 304 n n 
C24 H3 R0G sing 305 n n 
C02 H4 R0G sing 306 n n 
C03 H5 R0G sing 307 n n 
C03 H6 R0G sing 308 n n 
C04 H7 R0G sing 309 n n 
C04 H8 R0G sing 310 n n 
C05 H9 R0G sing 311 n n 
C05 H10 R0G sing 312 n n 
C06 H11 R0G sing 313 n n 
C06 H12 R0G sing 314 n n 
C08 H13 R0G sing 315 n n 
C09 H14 R0G sing 316 n n 
C09 H15 R0G sing 317 n n 
C11 H16 R0G sing 318 n n 
C12 H17 R0G sing 319 n n 
C14 H18 R0G sing 320 n n 
C16 H19 R0G sing 321 n n 
C19 H20 R0G sing 322 n n 
C25 H21 R0G sing 323 n n 
N01 H22 R0G sing 324 n n 
N01 H23 R0G sing 325 n n 
#
_atom_sites.entry_id                     6UZA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 R0G A 1 1001 1 R0G LIG . 
F 3 S9Y A 1 1002 2 S9Y 6O8 . 
G 4 SBJ A 1 1003 3 SBJ 6OE . 
H 5 Y01 A 1 1004 4 Y01 Y01 . 
I 4 SBJ A 1 1005 3 SBJ 6OE . 
J 5 Y01 A 1 1006 5 Y01 Y01 . 
K 5 Y01 B 1 1001 5 Y01 Y01 . 
L 2 R0G B 1 1002 1 R0G LIG . 
M 3 S9Y B 1 1003 2 S9Y 6O8 . 
N 4 SBJ B 1 1004 3 SBJ 6OE . 
O 5 Y01 B 1 1005 4 Y01 Y01 . 
P 5 Y01 C 1 1001 5 Y01 Y01 . 
Q 2 R0G C 1 1002 1 R0G LIG . 
R 3 S9Y C 1 1003 2 S9Y 6O8 . 
S 4 SBJ C 1 1004 3 SBJ 6OE . 
T 5 Y01 C 1 1005 4 Y01 Y01 . 
U 5 Y01 D 1 1001 5 Y01 Y01 . 
V 2 R0G D 1 1002 1 R0G LIG . 
W 3 S9Y D 1 1003 2 S9Y 6O8 . 
X 5 Y01 D 1 1004 4 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 R0G . . . Q 2 197.868 149.875 152.852 1 44.59 ? C10 R0G 1002 C 1 
HETATM 2 C C13 R0G . . . Q 2 199.474 152.193 153.505 1 44.59 ? C13 R0G 1002 C 1 
HETATM 3 C C15 R0G . . . Q 2 198.882 149.817 153.925 1 44.59 ? C15 R0G 1002 C 1 
HETATM 4 C C20 R0G . . . Q 2 202.442 148.026 156.871 1 44.59 ? C20 R0G 1002 C 1 
HETATM 5 C C21 R0G . . . Q 2 202.421 147.613 158.242 1 44.59 ? C21 R0G 1002 C 1 
HETATM 6 C C22 R0G . . . Q 2 203.683 147.331 159.108 1 44.59 ? C22 R0G 1002 C 1 
HETATM 7 C C24 R0G . . . Q 2 201.134 147.463 158.809 1 44.59 ? C24 R0G 1002 C 1 
HETATM 8 C C02 R0G . . . Q 2 196.445 144.293 153.036 1 44.59 ? C02 R0G 1002 C 1 
HETATM 9 C C03 R0G . . . Q 2 196.986 143.472 154.171 1 44.59 ? C03 R0G 1002 C 1 
HETATM 10 C C04 R0G . . . Q 2 198.323 143.998 154.597 1 44.59 ? C04 R0G 1002 C 1 
HETATM 11 C C05 R0G . . . Q 2 198.391 145.541 154.735 1 44.59 ? C05 R0G 1002 C 1 
HETATM 12 C C06 R0G . . . Q 2 196.412 145.813 153.403 1 44.59 ? C06 R0G 1002 C 1 
HETATM 13 C C08 R0G . . . Q 2 197.532 147.784 154.096 1 44.59 ? C08 R0G 1002 C 1 
HETATM 14 C C09 R0G . . . Q 2 197.188 148.516 152.747 1 44.59 ? C09 R0G 1002 C 1 
HETATM 15 C C11 R0G . . . Q 2 197.691 151.098 152.132 1 44.59 ? C11 R0G 1002 C 1 
HETATM 16 C C12 R0G . . . Q 2 198.498 152.258 152.461 1 44.59 ? C12 R0G 1002 C 1 
HETATM 17 C C14 R0G . . . Q 2 199.675 150.959 154.253 1 44.59 ? C14 R0G 1002 C 1 
HETATM 18 C C16 R0G . . . Q 2 198.901 148.343 154.591 1 44.59 ? C16 R0G 1002 C 1 
HETATM 19 C C18 R0G . . . Q 2 199.997 148.113 156.714 1 44.59 ? C18 R0G 1002 C 1 
HETATM 20 C C19 R0G . . . Q 2 201.282 148.275 156.116 1 44.59 ? C19 R0G 1002 C 1 
HETATM 21 C C25 R0G . . . Q 2 199.932 147.709 158.066 1 44.59 ? C25 R0G 1002 C 1 
HETATM 22 N N01 R0G . . . Q 2 195.006 143.799 152.76 1 44.59 ? N01 R0G 1002 C 1 
HETATM 23 N N07 R0G . . . Q 2 197.718 146.382 153.718 1 44.59 ? N07 R0G 1002 C 1 
HETATM 24 N N23 R0G . . . Q 2 204.633 147.116 159.762 1 44.59 ? N23 R0G 1002 C 1 
HETATM 25 O O17 R0G . . . Q 2 198.798 148.353 156.015 1 44.59 ? O17 R0G 1002 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           25 
#