data_6UZA
#
_model_server_result.job_id            DSMJewUjmuXPO4jPnJ4LAA 
_model_server_result.datetime_utc      '2025-08-31 16:24:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1004}' 
#
_entry.id    6UZA 
#
_exptl.entry_id    6UZA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              607.8 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{S})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-octanoyloxy-propan-2-yl] octadecanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UZA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 N N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 171 A CYS 255 1_555 A SG CYS 174 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 171 B CYS 255 1_555 B SG CYS 174 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 C SG CYS 171 C CYS 255 1_555 C SG CYS 174 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 D SG CYS 171 D CYS 255 1_555 D SG CYS 174 D CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C31 H62 N O8 P' 
_chem_comp.formula_weight    607.8 
_chem_comp.id                SBJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{S})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-octanoyloxy-propan-2-yl] octadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C5 SBJ sing 390 n n 
C4 C5 SBJ sing 391 n n 
C4 O4P SBJ sing 392 n n 
O2P P SBJ doub 393 n n 
O4P P SBJ sing 394 n n 
P O3P SBJ sing 395 n n 
P O1P SBJ sing 396 n n 
O31 C31 SBJ doub 397 n n 
C1 O3P SBJ sing 398 n n 
C1 C2 SBJ sing 399 n n 
C31 O2 SBJ sing 400 n n 
C31 C32 SBJ sing 401 n n 
O2 C2 SBJ sing 402 n n 
C2 C3 SBJ sing 403 n n 
C33 C32 SBJ sing 404 n n 
C33 C34 SBJ sing 405 n n 
C34 C35 SBJ sing 406 n n 
C3 O3 SBJ sing 407 n n 
O3 C11 SBJ sing 408 n n 
C35 C36 SBJ sing 409 n n 
C11 O11 SBJ doub 410 n n 
C11 C12 SBJ sing 411 n n 
C36 C37 SBJ sing 412 n n 
C12 C13 SBJ sing 413 n n 
C37 C38 SBJ sing 414 n n 
C13 C14 SBJ sing 415 n n 
C38 C39 SBJ sing 416 n n 
C14 C15 SBJ sing 417 n n 
C39 C40 SBJ sing 418 n n 
C15 C16 SBJ sing 419 n n 
C16 C17 SBJ sing 420 n n 
C40 C41 SBJ sing 421 n n 
C17 C18 SBJ sing 422 n n 
C41 C42 SBJ sing 423 n n 
C42 C43 SBJ sing 424 n n 
C43 C44 SBJ sing 425 n n 
C44 C45 SBJ sing 426 n n 
C45 C46 SBJ sing 427 n n 
C46 C47 SBJ sing 428 n n 
C47 C48 SBJ sing 429 n n 
C48 H1 SBJ sing 430 n n 
C48 H2 SBJ sing 431 n n 
C48 H3 SBJ sing 432 n n 
C47 H4 SBJ sing 433 n n 
C47 H5 SBJ sing 434 n n 
C46 H6 SBJ sing 435 n n 
C46 H7 SBJ sing 436 n n 
C45 H8 SBJ sing 437 n n 
C45 H9 SBJ sing 438 n n 
C44 H10 SBJ sing 439 n n 
C44 H11 SBJ sing 440 n n 
C43 H12 SBJ sing 441 n n 
C43 H13 SBJ sing 442 n n 
C42 H14 SBJ sing 443 n n 
C42 H15 SBJ sing 444 n n 
C41 H16 SBJ sing 445 n n 
C41 H17 SBJ sing 446 n n 
C40 H18 SBJ sing 447 n n 
C40 H19 SBJ sing 448 n n 
C39 H20 SBJ sing 449 n n 
C39 H21 SBJ sing 450 n n 
C38 H22 SBJ sing 451 n n 
C38 H23 SBJ sing 452 n n 
C37 H24 SBJ sing 453 n n 
C37 H25 SBJ sing 454 n n 
C36 H26 SBJ sing 455 n n 
C36 H27 SBJ sing 456 n n 
C35 H28 SBJ sing 457 n n 
C35 H29 SBJ sing 458 n n 
C34 H30 SBJ sing 459 n n 
C34 H31 SBJ sing 460 n n 
C33 H32 SBJ sing 461 n n 
C33 H33 SBJ sing 462 n n 
C32 H34 SBJ sing 463 n n 
C32 H35 SBJ sing 464 n n 
C2 H36 SBJ sing 465 n n 
C1 H37 SBJ sing 466 n n 
C1 H38 SBJ sing 467 n n 
O1P H39 SBJ sing 468 n n 
C4 H40 SBJ sing 469 n n 
C4 H41 SBJ sing 470 n n 
C5 H42 SBJ sing 471 n n 
C5 H43 SBJ sing 472 n n 
N6 H44 SBJ sing 473 n n 
N6 H45 SBJ sing 474 n n 
C3 H47 SBJ sing 475 n n 
C3 H48 SBJ sing 476 n n 
C12 H49 SBJ sing 477 n n 
C12 H50 SBJ sing 478 n n 
C13 H51 SBJ sing 479 n n 
C13 H52 SBJ sing 480 n n 
C14 H53 SBJ sing 481 n n 
C14 H54 SBJ sing 482 n n 
C15 H55 SBJ sing 483 n n 
C15 H56 SBJ sing 484 n n 
C16 H57 SBJ sing 485 n n 
C16 H58 SBJ sing 486 n n 
C17 H59 SBJ sing 487 n n 
C17 H60 SBJ sing 488 n n 
C18 H61 SBJ sing 489 n n 
C18 H62 SBJ sing 490 n n 
C18 H63 SBJ sing 491 n n 
#
_atom_sites.entry_id                     6UZA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 R0G A 1 1001 1 R0G LIG . 
F 3 S9Y A 1 1002 2 S9Y 6O8 . 
G 4 SBJ A 1 1003 3 SBJ 6OE . 
H 5 Y01 A 1 1004 4 Y01 Y01 . 
I 4 SBJ A 1 1005 3 SBJ 6OE . 
J 5 Y01 A 1 1006 5 Y01 Y01 . 
K 5 Y01 B 1 1001 5 Y01 Y01 . 
L 2 R0G B 1 1002 1 R0G LIG . 
M 3 S9Y B 1 1003 2 S9Y 6O8 . 
N 4 SBJ B 1 1004 3 SBJ 6OE . 
O 5 Y01 B 1 1005 4 Y01 Y01 . 
P 5 Y01 C 1 1001 5 Y01 Y01 . 
Q 2 R0G C 1 1002 1 R0G LIG . 
R 3 S9Y C 1 1003 2 S9Y 6O8 . 
S 4 SBJ C 1 1004 3 SBJ 6OE . 
T 5 Y01 C 1 1005 4 Y01 Y01 . 
U 5 Y01 D 1 1001 5 Y01 Y01 . 
V 2 R0G D 1 1002 1 R0G LIG . 
W 3 S9Y D 1 1003 2 S9Y 6O8 . 
X 5 Y01 D 1 1004 4 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 SBJ . . . S 4 179.912 153.784 148.933 1 47.93 ? C48 SBJ 1004 C 1 
HETATM 2 C C47 SBJ . . . S 4 179.178 152.503 148.559 1 47.93 ? C47 SBJ 1004 C 1 
HETATM 3 C C46 SBJ . . . S 4 179.011 152.335 147.05 1 47.93 ? C46 SBJ 1004 C 1 
HETATM 4 C C45 SBJ . . . S 4 178.218 151.074 146.692 1 47.93 ? C45 SBJ 1004 C 1 
HETATM 5 C C44 SBJ . . . S 4 177.948 150.972 145.187 1 47.93 ? C44 SBJ 1004 C 1 
HETATM 6 C C43 SBJ . . . S 4 176.925 149.885 144.824 1 47.93 ? C43 SBJ 1004 C 1 
HETATM 7 C C42 SBJ . . . S 4 175.874 150.379 143.814 1 47.93 ? C42 SBJ 1004 C 1 
HETATM 8 C C41 SBJ . . . S 4 175.608 149.393 142.667 1 47.93 ? C41 SBJ 1004 C 1 
HETATM 9 C C40 SBJ . . . S 4 174.93 150.046 141.453 1 47.93 ? C40 SBJ 1004 C 1 
HETATM 10 C C39 SBJ . . . S 4 174.706 149.099 140.265 1 47.93 ? C39 SBJ 1004 C 1 
HETATM 11 C C38 SBJ . . . S 4 174.996 149.762 138.918 1 47.93 ? C38 SBJ 1004 C 1 
HETATM 12 C C37 SBJ . . . S 4 174.222 149.222 137.71 1 47.93 ? C37 SBJ 1004 C 1 
HETATM 13 C C36 SBJ . . . S 4 174.003 150.204 136.545 1 47.93 ? C36 SBJ 1004 C 1 
HETATM 14 C C35 SBJ . . . S 4 172.894 149.803 135.562 1 47.93 ? C35 SBJ 1004 C 1 
HETATM 15 C C34 SBJ . . . S 4 173.057 150.288 134.109 1 47.93 ? C34 SBJ 1004 C 1 
HETATM 16 C C33 SBJ . . . S 4 173.192 149.149 133.066 1 47.93 ? C33 SBJ 1004 C 1 
HETATM 17 C C32 SBJ . . . S 4 173.733 147.799 133.599 1 47.93 ? C32 SBJ 1004 C 1 
HETATM 18 C C31 SBJ . . . S 4 174.039 146.799 132.493 1 47.93 ? C31 SBJ 1004 C 1 
HETATM 19 O O31 SBJ . . . S 4 174.145 147.084 131.315 1 47.93 ? O31 SBJ 1004 C 1 
HETATM 20 O O2 SBJ . . . S 4 174.184 145.506 132.895 1 47.93 ? O2 SBJ 1004 C 1 
HETATM 21 C C2 SBJ . . . S 4 175.475 144.873 132.974 1 47.93 ? C2 SBJ 1004 C 1 
HETATM 22 C C1 SBJ . . . S 4 175.64 144.069 131.644 1 47.93 ? C1 SBJ 1004 C 1 
HETATM 23 O O3P SBJ . . . S 4 175.447 142.715 131.862 1 47.93 ? O3P SBJ 1004 C 1 
HETATM 24 P P SBJ . . . S 4 174.082 141.931 131.149 1 47.93 ? P SBJ 1004 C 1 
HETATM 25 O O1P SBJ . . . S 4 173.13 141.642 132.254 1 47.93 ? O1P SBJ 1004 C 1 
HETATM 26 O O2P SBJ . . . S 4 173.805 142.704 129.911 1 47.93 ? O2P SBJ 1004 C 1 
HETATM 27 O O4P SBJ . . . S 4 174.629 140.404 130.64 1 47.93 ? O4P SBJ 1004 C 1 
HETATM 28 C C4 SBJ . . . S 4 174.19 139.929 129.421 1 47.93 ? C4 SBJ 1004 C 1 
HETATM 29 C C5 SBJ . . . S 4 172.909 139.086 129.643 1 47.93 ? C5 SBJ 1004 C 1 
HETATM 30 N N6 SBJ . . . S 4 171.978 139.126 128.509 1 47.93 ? N6 SBJ 1004 C 1 
HETATM 31 C C3 SBJ . . . S 4 175.393 143.914 134.204 1 47.93 ? C3 SBJ 1004 C 1 
HETATM 32 O O3 SBJ . . . S 4 176.68 143.361 134.514 1 47.93 ? O3 SBJ 1004 C 1 
HETATM 33 C C11 SBJ . . . S 4 176.953 143.023 135.819 1 47.93 ? C11 SBJ 1004 C 1 
HETATM 34 O O11 SBJ . . . S 4 177.558 141.992 136.056 1 47.93 ? O11 SBJ 1004 C 1 
HETATM 35 C C12 SBJ . . . S 4 176.46 143.989 136.898 1 47.93 ? C12 SBJ 1004 C 1 
HETATM 36 C C13 SBJ . . . S 4 177.234 143.885 138.229 1 47.93 ? C13 SBJ 1004 C 1 
HETATM 37 C C14 SBJ . . . S 4 177.302 145.207 139.022 1 47.93 ? C14 SBJ 1004 C 1 
HETATM 38 C C15 SBJ . . . S 4 177.929 145.029 140.412 1 47.93 ? C15 SBJ 1004 C 1 
HETATM 39 C C16 SBJ . . . S 4 178.381 146.349 141.049 1 47.93 ? C16 SBJ 1004 C 1 
HETATM 40 C C17 SBJ . . . S 4 178.837 146.156 142.496 1 47.93 ? C17 SBJ 1004 C 1 
HETATM 41 C C18 SBJ . . . S 4 179.772 147.259 142.968 1 47.93 ? C18 SBJ 1004 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           406 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           41 
#