data_6V02 # _model_server_result.job_id S1iF8WrM7hKgmnpbTxY-Cw _model_server_result.datetime_utc '2024-11-21 23:37:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6V02 # _exptl.entry_id 6V02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.53 _cell.angle_gamma 90 _cell.entry_id 6V02 _cell.length_a 50.78 _cell.length_b 66.22 _cell.length_c 124.53 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 14 1_555 A SG CYS 32 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 40 A CYS 42 1_555 A SG CYS 47 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 80 A CYS 82 1_555 A SG CYS 112 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 97 A CYS 99 1_555 A SG CYS 124 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 A SG CYS 137 A CYS 139 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 191 A CYS 193 1_555 A SG CYS 198 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 A SG CYS 238 A CYS 240 1_555 A SG CYS 269 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 251 A CYS 253 1_555 A SG CYS 281 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 A SG CYS 291 A CYS 293 1_555 A SG CYS 329 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 A SG CYS 383 A CYS 385 1_555 A SG CYS 417 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf11 A SG CYS 397 A CYS 399 1_555 A SG CYS 429 A CYS 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 A SG CYS 549 A CYS 551 1_555 A SG CYS 580 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 A SG CYS 590 A CYS 592 1_555 A SG CYS 627 A CYS 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 A SG CYS 635 A CYS 637 1_555 A SG CYS 642 A CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 A SG CYS 694 A CYS 696 1_555 A SG CYS 723 A CYS 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 398 A ASN 400 1_555 B C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6V02 _atom_sites.fract_transf_matrix[1][1] 0.019693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003662 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 801 728 NAG NAG . C 3 HOH A 1 901 1 HOH HOH . C 3 HOH A 2 902 35 HOH HOH . C 3 HOH A 3 903 15 HOH HOH . C 3 HOH A 4 904 7 HOH HOH . C 3 HOH A 5 905 64 HOH HOH . C 3 HOH A 6 906 85 HOH HOH . C 3 HOH A 7 907 38 HOH HOH . C 3 HOH A 8 908 75 HOH HOH . C 3 HOH A 9 909 78 HOH HOH . C 3 HOH A 10 910 80 HOH HOH . C 3 HOH A 11 911 61 HOH HOH . C 3 HOH A 12 912 74 HOH HOH . C 3 HOH A 13 913 81 HOH HOH . C 3 HOH A 14 914 6 HOH HOH . C 3 HOH A 15 915 14 HOH HOH . C 3 HOH A 16 916 20 HOH HOH . C 3 HOH A 17 917 2 HOH HOH . C 3 HOH A 18 918 25 HOH HOH . C 3 HOH A 19 919 33 HOH HOH . C 3 HOH A 20 920 9 HOH HOH . C 3 HOH A 21 921 27 HOH HOH . C 3 HOH A 22 922 40 HOH HOH . C 3 HOH A 23 923 13 HOH HOH . C 3 HOH A 24 924 72 HOH HOH . C 3 HOH A 25 925 67 HOH HOH . C 3 HOH A 26 926 51 HOH HOH . C 3 HOH A 27 927 26 HOH HOH . C 3 HOH A 28 928 10 HOH HOH . C 3 HOH A 29 929 22 HOH HOH . C 3 HOH A 30 930 8 HOH HOH . C 3 HOH A 31 931 69 HOH HOH . C 3 HOH A 32 932 48 HOH HOH . C 3 HOH A 33 933 49 HOH HOH . C 3 HOH A 34 934 24 HOH HOH . C 3 HOH A 35 935 16 HOH HOH . C 3 HOH A 36 936 17 HOH HOH . C 3 HOH A 37 937 73 HOH HOH . C 3 HOH A 38 938 57 HOH HOH . C 3 HOH A 39 939 21 HOH HOH . C 3 HOH A 40 940 32 HOH HOH . C 3 HOH A 41 941 11 HOH HOH . C 3 HOH A 42 942 4 HOH HOH . C 3 HOH A 43 943 82 HOH HOH . C 3 HOH A 44 944 5 HOH HOH . C 3 HOH A 45 945 34 HOH HOH . C 3 HOH A 46 946 30 HOH HOH . C 3 HOH A 47 947 65 HOH HOH . C 3 HOH A 48 948 46 HOH HOH . C 3 HOH A 49 949 63 HOH HOH . C 3 HOH A 50 950 23 HOH HOH . C 3 HOH A 51 951 41 HOH HOH . C 3 HOH A 52 952 83 HOH HOH . C 3 HOH A 53 953 36 HOH HOH . C 3 HOH A 54 954 3 HOH HOH . C 3 HOH A 55 955 70 HOH HOH . C 3 HOH A 56 956 68 HOH HOH . C 3 HOH A 57 957 12 HOH HOH . C 3 HOH A 58 958 47 HOH HOH . C 3 HOH A 59 959 77 HOH HOH . C 3 HOH A 60 960 39 HOH HOH . C 3 HOH A 61 961 53 HOH HOH . C 3 HOH A 62 962 79 HOH HOH . C 3 HOH A 63 963 31 HOH HOH . C 3 HOH A 64 964 19 HOH HOH . C 3 HOH A 65 965 71 HOH HOH . C 3 HOH A 66 966 60 HOH HOH . C 3 HOH A 67 967 50 HOH HOH . C 3 HOH A 68 968 58 HOH HOH . C 3 HOH A 69 969 59 HOH HOH . C 3 HOH A 70 970 76 HOH HOH . C 3 HOH A 71 971 66 HOH HOH . C 3 HOH A 72 972 84 HOH HOH . C 3 HOH A 73 973 45 HOH HOH . C 3 HOH A 74 974 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 37.196 -14.314 42.059 1 84.99 ? C1 NAG 801 A 1 HETATM 2 C C2 NAG . . . B 2 37.693 -13.103 41.261 1 90.52 ? C2 NAG 801 A 1 HETATM 3 C C3 NAG . . . B 2 38.97 -13.456 40.494 1 91.9 ? C3 NAG 801 A 1 HETATM 4 C C4 NAG . . . B 2 40.015 -14.114 41.389 1 92.27 ? C4 NAG 801 A 1 HETATM 5 C C5 NAG . . . B 2 39.415 -15.205 42.276 1 91.81 ? C5 NAG 801 A 1 HETATM 6 C C6 NAG . . . B 2 40.427 -15.678 43.319 1 92.52 ? C6 NAG 801 A 1 HETATM 7 C C7 NAG . . . B 2 35.841 -11.632 40.565 1 95.72 ? C7 NAG 801 A 1 HETATM 8 C C8 NAG . . . B 2 34.917 -11.269 39.44 1 96.28 ? C8 NAG 801 A 1 HETATM 9 N N2 NAG . . . B 2 36.687 -12.636 40.315 1 93.4 ? N2 NAG 801 A 1 HETATM 10 O O3 NAG . . . B 2 39.547 -12.282 39.905 1 91.36 ? O3 NAG 801 A 1 HETATM 11 O O4 NAG . . . B 2 41.031 -14.68 40.551 1 93.8 ? O4 NAG 801 A 1 HETATM 12 O O5 NAG . . . B 2 38.236 -14.734 42.946 1 89.17 ? O5 NAG 801 A 1 HETATM 13 O O6 NAG . . . B 2 41.675 -16.015 42.697 1 92.88 ? O6 NAG 801 A 1 HETATM 14 O O7 NAG . . . B 2 35.811 -11.031 41.627 1 99.31 ? O7 NAG 801 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #