data_6V04 # _model_server_result.job_id NEB-lqI-e2brJ3Mq224nEQ _model_server_result.datetime_utc '2024-12-22 06:11:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6V04 # _exptl.entry_id 6V04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6V04 _cell.length_a 73.171 _cell.length_b 73.171 _cell.length_c 123.944 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 146 A ASP 145 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 A OD1 ASP 146 A ASP 145 1_555 B NA NA . A NA 301 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A OE1 GLN 149 A GLN 148 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc4 A OE1 GLU 255 A GLU 254 1_555 C MG MG . A MG 302 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 B NA NA . A NA 301 1_555 G O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc6 B NA NA . A NA 301 1_555 G O HOH . A HOH 429 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 B NA NA . A NA 301 1_555 G O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 B NA NA . A NA 301 1_555 G O HOH . A HOH 527 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc9 C MG MG . A MG 302 1_555 G O HOH . A HOH 419 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc10 C MG MG . A MG 302 1_555 G O HOH . A HOH 467 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc11 C MG MG . A MG 302 1_555 G O HOH . A HOH 482 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc12 C MG MG . A MG 302 1_555 G O HOH . A HOH 487 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6V04 _atom_sites.fract_transf_matrix[1][1] 0.013667 _atom_sites.fract_transf_matrix[1][2] 0.00789 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 3 MG A 1 302 302 MG MG . D 4 CL A 1 303 303 CL CL . E 4 CL A 1 304 304 CL CL . F 4 CL A 1 305 305 CL CL . G 5 HOH A 1 401 468 HOH HOH . G 5 HOH A 2 402 375 HOH HOH . G 5 HOH A 3 403 505 HOH HOH . G 5 HOH A 4 404 473 HOH HOH . G 5 HOH A 5 405 583 HOH HOH . G 5 HOH A 6 406 528 HOH HOH . G 5 HOH A 7 407 463 HOH HOH . G 5 HOH A 8 408 544 HOH HOH . G 5 HOH A 9 409 543 HOH HOH . G 5 HOH A 10 410 435 HOH HOH . G 5 HOH A 11 411 385 HOH HOH . G 5 HOH A 12 412 498 HOH HOH . G 5 HOH A 13 413 400 HOH HOH . G 5 HOH A 14 414 446 HOH HOH . G 5 HOH A 15 415 477 HOH HOH . G 5 HOH A 16 416 564 HOH HOH . G 5 HOH A 17 417 455 HOH HOH . G 5 HOH A 18 418 554 HOH HOH . G 5 HOH A 19 419 321 HOH HOH . G 5 HOH A 20 420 570 HOH HOH . G 5 HOH A 21 421 450 HOH HOH . G 5 HOH A 22 422 577 HOH HOH . G 5 HOH A 23 423 532 HOH HOH . G 5 HOH A 24 424 508 HOH HOH . G 5 HOH A 25 425 501 HOH HOH . G 5 HOH A 26 426 413 HOH HOH . G 5 HOH A 27 427 578 HOH HOH . G 5 HOH A 28 428 549 HOH HOH . G 5 HOH A 29 429 316 HOH HOH . G 5 HOH A 30 430 439 HOH HOH . G 5 HOH A 31 431 309 HOH HOH . G 5 HOH A 32 432 409 HOH HOH . G 5 HOH A 33 433 512 HOH HOH . G 5 HOH A 34 434 415 HOH HOH . G 5 HOH A 35 435 497 HOH HOH . G 5 HOH A 36 436 377 HOH HOH . G 5 HOH A 37 437 347 HOH HOH . G 5 HOH A 38 438 333 HOH HOH . G 5 HOH A 39 439 563 HOH HOH . G 5 HOH A 40 440 448 HOH HOH . G 5 HOH A 41 441 317 HOH HOH . G 5 HOH A 42 442 533 HOH HOH . G 5 HOH A 43 443 410 HOH HOH . G 5 HOH A 44 444 499 HOH HOH . G 5 HOH A 45 445 457 HOH HOH . G 5 HOH A 46 446 464 HOH HOH . G 5 HOH A 47 447 491 HOH HOH . G 5 HOH A 48 448 538 HOH HOH . G 5 HOH A 49 449 339 HOH HOH . G 5 HOH A 50 450 392 HOH HOH . G 5 HOH A 51 451 394 HOH HOH . G 5 HOH A 52 452 454 HOH HOH . G 5 HOH A 53 453 496 HOH HOH . G 5 HOH A 54 454 328 HOH HOH . G 5 HOH A 55 455 369 HOH HOH . G 5 HOH A 56 456 345 HOH HOH . G 5 HOH A 57 457 567 HOH HOH . G 5 HOH A 58 458 486 HOH HOH . G 5 HOH A 59 459 364 HOH HOH . G 5 HOH A 60 460 322 HOH HOH . G 5 HOH A 61 461 580 HOH HOH . G 5 HOH A 62 462 315 HOH HOH . G 5 HOH A 63 463 447 HOH HOH . G 5 HOH A 64 464 310 HOH HOH . G 5 HOH A 65 465 414 HOH HOH . G 5 HOH A 66 466 329 HOH HOH . G 5 HOH A 67 467 307 HOH HOH . G 5 HOH A 68 468 478 HOH HOH . G 5 HOH A 69 469 324 HOH HOH . G 5 HOH A 70 470 541 HOH HOH . G 5 HOH A 71 471 308 HOH HOH . G 5 HOH A 72 472 314 HOH HOH . G 5 HOH A 73 473 313 HOH HOH . G 5 HOH A 74 474 419 HOH HOH . G 5 HOH A 75 475 459 HOH HOH . G 5 HOH A 76 476 502 HOH HOH . G 5 HOH A 77 477 548 HOH HOH . G 5 HOH A 78 478 332 HOH HOH . G 5 HOH A 79 479 361 HOH HOH . G 5 HOH A 80 480 365 HOH HOH . G 5 HOH A 81 481 395 HOH HOH . G 5 HOH A 82 482 311 HOH HOH . G 5 HOH A 83 483 490 HOH HOH . G 5 HOH A 84 484 335 HOH HOH . G 5 HOH A 85 485 348 HOH HOH . G 5 HOH A 86 486 436 HOH HOH . G 5 HOH A 87 487 319 HOH HOH . G 5 HOH A 88 488 568 HOH HOH . G 5 HOH A 89 489 428 HOH HOH . G 5 HOH A 90 490 466 HOH HOH . G 5 HOH A 91 491 337 HOH HOH . G 5 HOH A 92 492 338 HOH HOH . G 5 HOH A 93 493 550 HOH HOH . G 5 HOH A 94 494 357 HOH HOH . G 5 HOH A 95 495 422 HOH HOH . G 5 HOH A 96 496 424 HOH HOH . G 5 HOH A 97 497 360 HOH HOH . G 5 HOH A 98 498 320 HOH HOH . G 5 HOH A 99 499 445 HOH HOH . G 5 HOH A 100 500 475 HOH HOH . G 5 HOH A 101 501 452 HOH HOH . G 5 HOH A 102 502 370 HOH HOH . G 5 HOH A 103 503 420 HOH HOH . G 5 HOH A 104 504 331 HOH HOH . G 5 HOH A 105 505 431 HOH HOH . G 5 HOH A 106 506 340 HOH HOH . G 5 HOH A 107 507 582 HOH HOH . G 5 HOH A 108 508 426 HOH HOH . G 5 HOH A 109 509 358 HOH HOH . G 5 HOH A 110 510 344 HOH HOH . G 5 HOH A 111 511 325 HOH HOH . G 5 HOH A 112 512 480 HOH HOH . G 5 HOH A 113 513 561 HOH HOH . G 5 HOH A 114 514 574 HOH HOH . G 5 HOH A 115 515 411 HOH HOH . G 5 HOH A 116 516 351 HOH HOH . G 5 HOH A 117 517 312 HOH HOH . G 5 HOH A 118 518 366 HOH HOH . G 5 HOH A 119 519 406 HOH HOH . G 5 HOH A 120 520 404 HOH HOH . G 5 HOH A 121 521 373 HOH HOH . G 5 HOH A 122 522 327 HOH HOH . G 5 HOH A 123 523 326 HOH HOH . G 5 HOH A 124 524 336 HOH HOH . G 5 HOH A 125 525 453 HOH HOH . G 5 HOH A 126 526 560 HOH HOH . G 5 HOH A 127 527 318 HOH HOH . G 5 HOH A 128 528 346 HOH HOH . G 5 HOH A 129 529 527 HOH HOH . G 5 HOH A 130 530 460 HOH HOH . G 5 HOH A 131 531 573 HOH HOH . G 5 HOH A 132 532 451 HOH HOH . G 5 HOH A 133 533 427 HOH HOH . G 5 HOH A 134 534 393 HOH HOH . G 5 HOH A 135 535 474 HOH HOH . G 5 HOH A 136 536 510 HOH HOH . G 5 HOH A 137 537 449 HOH HOH . G 5 HOH A 138 538 362 HOH HOH . G 5 HOH A 139 539 372 HOH HOH . G 5 HOH A 140 540 520 HOH HOH . G 5 HOH A 141 541 425 HOH HOH . G 5 HOH A 142 542 376 HOH HOH . G 5 HOH A 143 543 489 HOH HOH . G 5 HOH A 144 544 542 HOH HOH . G 5 HOH A 145 545 355 HOH HOH . G 5 HOH A 146 546 581 HOH HOH . G 5 HOH A 147 547 407 HOH HOH . G 5 HOH A 148 548 417 HOH HOH . G 5 HOH A 149 549 383 HOH HOH . G 5 HOH A 150 550 440 HOH HOH . G 5 HOH A 151 551 354 HOH HOH . G 5 HOH A 152 552 350 HOH HOH . G 5 HOH A 153 553 585 HOH HOH . G 5 HOH A 154 554 342 HOH HOH . G 5 HOH A 155 555 367 HOH HOH . G 5 HOH A 156 556 379 HOH HOH . G 5 HOH A 157 557 408 HOH HOH . G 5 HOH A 158 558 461 HOH HOH . G 5 HOH A 159 559 412 HOH HOH . G 5 HOH A 160 560 547 HOH HOH . G 5 HOH A 161 561 418 HOH HOH . G 5 HOH A 162 562 465 HOH HOH . G 5 HOH A 163 563 551 HOH HOH . G 5 HOH A 164 564 397 HOH HOH . G 5 HOH A 165 565 330 HOH HOH . G 5 HOH A 166 566 421 HOH HOH . G 5 HOH A 167 567 402 HOH HOH . G 5 HOH A 168 568 566 HOH HOH . G 5 HOH A 169 569 555 HOH HOH . G 5 HOH A 170 570 434 HOH HOH . G 5 HOH A 171 571 483 HOH HOH . G 5 HOH A 172 572 472 HOH HOH . G 5 HOH A 173 573 524 HOH HOH . G 5 HOH A 174 574 534 HOH HOH . G 5 HOH A 175 575 444 HOH HOH . G 5 HOH A 176 576 390 HOH HOH . G 5 HOH A 177 577 430 HOH HOH . G 5 HOH A 178 578 526 HOH HOH . G 5 HOH A 179 579 396 HOH HOH . G 5 HOH A 180 580 356 HOH HOH . G 5 HOH A 181 581 579 HOH HOH . G 5 HOH A 182 582 401 HOH HOH . G 5 HOH A 183 583 381 HOH HOH . G 5 HOH A 184 584 388 HOH HOH . G 5 HOH A 185 585 535 HOH HOH . G 5 HOH A 186 586 470 HOH HOH . G 5 HOH A 187 587 443 HOH HOH . G 5 HOH A 188 588 398 HOH HOH . G 5 HOH A 189 589 546 HOH HOH . G 5 HOH A 190 590 441 HOH HOH . G 5 HOH A 191 591 334 HOH HOH . G 5 HOH A 192 592 323 HOH HOH . G 5 HOH A 193 593 429 HOH HOH . G 5 HOH A 194 594 359 HOH HOH . G 5 HOH A 195 595 352 HOH HOH . G 5 HOH A 196 596 493 HOH HOH . G 5 HOH A 197 597 386 HOH HOH . G 5 HOH A 198 598 509 HOH HOH . G 5 HOH A 199 599 389 HOH HOH . G 5 HOH A 200 600 575 HOH HOH . G 5 HOH A 201 601 519 HOH HOH . G 5 HOH A 202 602 479 HOH HOH . G 5 HOH A 203 603 587 HOH HOH . G 5 HOH A 204 604 530 HOH HOH . G 5 HOH A 205 605 380 HOH HOH . G 5 HOH A 206 606 514 HOH HOH . G 5 HOH A 207 607 349 HOH HOH . G 5 HOH A 208 608 458 HOH HOH . G 5 HOH A 209 609 494 HOH HOH . G 5 HOH A 210 610 487 HOH HOH . G 5 HOH A 211 611 511 HOH HOH . G 5 HOH A 212 612 353 HOH HOH . G 5 HOH A 213 613 306 HOH HOH . G 5 HOH A 214 614 432 HOH HOH . G 5 HOH A 215 615 495 HOH HOH . G 5 HOH A 216 616 467 HOH HOH . G 5 HOH A 217 617 516 HOH HOH . G 5 HOH A 218 618 482 HOH HOH . G 5 HOH A 219 619 539 HOH HOH . G 5 HOH A 220 620 442 HOH HOH . G 5 HOH A 221 621 503 HOH HOH . G 5 HOH A 222 622 571 HOH HOH . G 5 HOH A 223 623 469 HOH HOH . G 5 HOH A 224 624 537 HOH HOH . G 5 HOH A 225 625 371 HOH HOH . G 5 HOH A 226 626 437 HOH HOH . G 5 HOH A 227 627 513 HOH HOH . G 5 HOH A 228 628 433 HOH HOH . G 5 HOH A 229 629 485 HOH HOH . G 5 HOH A 230 630 565 HOH HOH . G 5 HOH A 231 631 558 HOH HOH . G 5 HOH A 232 632 456 HOH HOH . G 5 HOH A 233 633 391 HOH HOH . G 5 HOH A 234 634 525 HOH HOH . G 5 HOH A 235 635 405 HOH HOH . G 5 HOH A 236 636 403 HOH HOH . G 5 HOH A 237 637 584 HOH HOH . G 5 HOH A 238 638 387 HOH HOH . G 5 HOH A 239 639 374 HOH HOH . G 5 HOH A 240 640 506 HOH HOH . G 5 HOH A 241 641 523 HOH HOH . G 5 HOH A 242 642 545 HOH HOH . G 5 HOH A 243 643 341 HOH HOH . G 5 HOH A 244 644 576 HOH HOH . G 5 HOH A 245 645 531 HOH HOH . G 5 HOH A 246 646 552 HOH HOH . G 5 HOH A 247 647 586 HOH HOH . G 5 HOH A 248 648 492 HOH HOH . G 5 HOH A 249 649 368 HOH HOH . G 5 HOH A 250 650 488 HOH HOH . G 5 HOH A 251 651 504 HOH HOH . G 5 HOH A 252 652 536 HOH HOH . G 5 HOH A 253 653 471 HOH HOH . G 5 HOH A 254 654 484 HOH HOH . G 5 HOH A 255 655 529 HOH HOH . G 5 HOH A 256 656 423 HOH HOH . G 5 HOH A 257 657 438 HOH HOH . G 5 HOH A 258 658 416 HOH HOH . G 5 HOH A 259 659 559 HOH HOH . G 5 HOH A 260 660 384 HOH HOH . G 5 HOH A 261 661 343 HOH HOH . G 5 HOH A 262 662 540 HOH HOH . G 5 HOH A 263 663 553 HOH HOH . G 5 HOH A 264 664 399 HOH HOH . G 5 HOH A 265 665 557 HOH HOH . G 5 HOH A 266 666 518 HOH HOH . G 5 HOH A 267 667 556 HOH HOH . G 5 HOH A 268 668 363 HOH HOH . G 5 HOH A 269 669 382 HOH HOH . G 5 HOH A 270 670 500 HOH HOH . G 5 HOH A 271 671 476 HOH HOH . G 5 HOH A 272 672 462 HOH HOH . G 5 HOH A 273 673 562 HOH HOH . G 5 HOH A 274 674 522 HOH HOH . G 5 HOH A 275 675 517 HOH HOH . G 5 HOH A 276 676 569 HOH HOH . G 5 HOH A 277 677 515 HOH HOH . G 5 HOH A 278 678 378 HOH HOH . G 5 HOH A 279 679 507 HOH HOH . G 5 HOH A 280 680 481 HOH HOH . G 5 HOH A 281 681 572 HOH HOH . G 5 HOH A 282 682 521 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.552 _atom_site.Cartn_y 35.597 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 26.19 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #