data_6V09 # _model_server_result.job_id KTabxh48vo02UOHXlPnkEg _model_server_result.datetime_utc '2025-04-22 09:41:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 6V09 # _exptl.entry_id 6V09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V09 _cell.length_a 160.248 _cell.length_b 171.16 _cell.length_c 113.369 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 404 NAG 2 n B NAG 2 B 2 NAG A 405 NAG 2 n B BMA 3 B 3 BMA A 406 BMA 2 n C NAG 1 C 1 NAG A 407 NAG 2 n C NAG 2 C 2 NAG A 408 NAG 2 n C BMA 3 C 3 BMA A 409 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 4 1_555 A SG CYS 59 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf2 A SG CYS 44 A CYS 32 1_555 A SG CYS 72 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf3 A SG CYS 77 A CYS 65 1_555 A SG CYS 117 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 103 A CYS 91 1_555 A SG CYS 130 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf5 A SG CYS 135 A CYS 123 1_555 A SG CYS 181 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 167 A CYS 155 1_555 A SG CYS 193 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf7 A SG CYS 198 A CYS 186 1_555 A SG CYS 241 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 A SG CYS 227 A CYS 215 1_555 A SG CYS 253 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf9 A SG CYS 257 A CYS 245 1_555 A SG CYS 308 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf10 A SG CYS 293 A CYS 281 1_555 A SG CYS 318 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? disulf ? disulf11 A SG CYS 300 A CYS 288 1_555 A SG CYS 338 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A ND2 ASN 155 A ASN 143 1_555 D C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 A ND2 ASN 176 A ASN 164 1_555 E C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale3 A ND2 ASN 186 A ASN 174 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale4 A ND2 ASN 246 A ASN 234 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6V09 _atom_sites.fract_transf_matrix[1][1] 0.00624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 401 401 NAG NAG . E 3 NAG A 1 402 403 NAG NAG . F 4 SO4 A 1 409 412 SO4 SO4 . G 4 SO4 A 1 410 413 SO4 SO4 . H 4 SO4 A 1 411 414 SO4 SO4 . I 4 SO4 A 1 412 415 SO4 SO4 . J 4 SO4 A 1 413 416 SO4 SO4 . K 4 SO4 A 1 414 417 SO4 SO4 . L 4 SO4 A 1 415 418 SO4 SO4 . M 4 SO4 A 1 416 419 SO4 SO4 . N 4 SO4 A 1 417 420 SO4 SO4 . O 4 SO4 A 1 418 421 SO4 SO4 . P 4 SO4 A 1 419 422 SO4 SO4 . Q 4 SO4 A 1 420 423 SO4 SO4 . R 4 SO4 A 1 421 424 SO4 SO4 . S 4 SO4 A 1 422 425 SO4 SO4 . T 4 SO4 A 1 423 426 SO4 SO4 . U 4 SO4 A 1 424 427 SO4 SO4 . V 4 SO4 A 1 425 428 SO4 SO4 . W 4 SO4 A 1 426 429 SO4 SO4 . X 4 SO4 A 1 427 430 SO4 SO4 . Y 4 SO4 A 1 428 431 SO4 SO4 . Z 4 SO4 A 1 429 432 SO4 SO4 . AA 4 SO4 A 1 430 433 SO4 SO4 . BA 4 SO4 A 1 431 434 SO4 SO4 . CA 4 SO4 A 1 432 435 SO4 SO4 . DA 4 SO4 A 1 433 436 SO4 SO4 . EA 4 SO4 A 1 434 437 SO4 SO4 . FA 5 HOH A 1 501 501 HOH HOH . FA 5 HOH A 2 502 502 HOH HOH . FA 5 HOH A 3 503 503 HOH HOH . FA 5 HOH A 4 504 504 HOH HOH . FA 5 HOH A 5 505 505 HOH HOH . FA 5 HOH A 6 506 506 HOH HOH . FA 5 HOH A 7 507 507 HOH HOH . FA 5 HOH A 8 508 508 HOH HOH . FA 5 HOH A 9 509 509 HOH HOH . FA 5 HOH A 10 510 510 HOH HOH . FA 5 HOH A 11 511 511 HOH HOH . FA 5 HOH A 12 512 512 HOH HOH . FA 5 HOH A 13 513 513 HOH HOH . FA 5 HOH A 14 514 514 HOH HOH . FA 5 HOH A 15 515 515 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -31.88 37.842 -25.7 1 127.9 ? C1 NAG 402 A 1 HETATM 2 C C2 NAG . . . E 3 -32.989 38.903 -25.908 1 129.42 ? C2 NAG 402 A 1 HETATM 3 C C3 NAG . . . E 3 -34.339 38.207 -25.682 1 130.31 ? C3 NAG 402 A 1 HETATM 4 C C4 NAG . . . E 3 -34.332 37.193 -24.515 1 135.35 ? C4 NAG 402 A 1 HETATM 5 C C5 NAG . . . E 3 -33.119 37.343 -23.571 1 134.52 ? C5 NAG 402 A 1 HETATM 6 C C6 NAG . . . E 3 -33.131 36.273 -22.46 1 123.4 ? C6 NAG 402 A 1 HETATM 7 C C7 NAG . . . E 3 -32.196 41.212 -25.258 1 118.54 ? C7 NAG 402 A 1 HETATM 8 C C8 NAG . . . E 3 -32.329 42.298 -24.22 1 111.47 ? C8 NAG 402 A 1 HETATM 9 N N2 NAG . . . E 3 -32.921 40.1 -25.041 1 128.07 ? N2 NAG 402 A 1 HETATM 10 O O3 NAG . . . E 3 -34.702 37.532 -26.892 1 121.83 ? O3 NAG 402 A 1 HETATM 11 O O4 NAG . . . E 3 -35.552 37.305 -23.76 1 130.1 ? O4 NAG 402 A 1 HETATM 12 O O5 NAG . . . E 3 -31.874 37.362 -24.323 1 144.42 ? O5 NAG 402 A 1 HETATM 13 O O6 NAG . . . E 3 -31.913 35.518 -22.391 1 109.28 ? O6 NAG 402 A 1 HETATM 14 O O7 NAG . . . E 3 -31.472 41.359 -26.227 1 111.27 ? O7 NAG 402 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #