data_6V0L # _model_server_result.job_id bvW4lFTvza8-FWZYvXY97w _model_server_result.datetime_utc '2025-02-27 21:14:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6V0L # _exptl.entry_id 6V0L _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' 3D1 1 X 3D1 1 1_555 A P DA 2 X DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? hydrog TYPE_6_PAIR hydrog1 A N1 DG 3 X DG 3 1_555 A O6 DG 7 X DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 DG 3 X DG 3 1_555 A N7 DG 7 X DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 DG 3 X DG 3 1_555 A N2 DG 14 X DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 DG 3 X DG 3 1_555 A N1 DG 14 X DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 DG 4 X DG 4 1_555 A O6 DG 8 X DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 DG 4 X DG 4 1_555 A N7 DG 8 X DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 DG 4 X DG 4 1_555 A N2 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 DG 4 X DG 4 1_555 A N1 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 DG 5 X DG 5 1_555 A O6 DG 9 X DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 DG 5 X DG 5 1_555 A N7 DG 9 X DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N7 DG 5 X DG 5 1_555 A N2 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A O6 DG 5 X DG 5 1_555 A N1 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 8 X DG 8 1_555 A O6 DG 11 X DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 8 X DG 8 1_555 A N7 DG 11 X DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N1 DG 9 X DG 9 1_555 A O6 DG 12 X DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A N2 DG 9 X DG 9 1_555 A N7 DG 12 X DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 DG 11 X DG 11 1_555 A O6 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 DG 11 X DG 11 1_555 A N7 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A N1 DG 12 X DG 12 1_555 A O6 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N2 DG 12 X DG 12 1_555 A N7 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DA MISPAIR' hydrog21 A N3 DA 17 X DA 17 1_555 A N6 DA 19 X DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id DGP _chem_comp.mon_nstd_flag n _chem_comp.name "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP1 DGP doub 146 n n P OP2 DGP sing 147 n n P OP3 DGP sing 148 n n P O5' DGP sing 149 n n OP2 HOP2 DGP sing 150 n n OP3 HOP3 DGP sing 151 n n O5' C5' DGP sing 152 n n C5' C4' DGP sing 153 n n C5' H5' DGP sing 154 n n C5' "H5''" DGP sing 155 n n C4' O4' DGP sing 156 n n C4' C3' DGP sing 157 n n C4' H4' DGP sing 158 n n O4' C1' DGP sing 159 n n C3' O3' DGP sing 160 n n C3' C2' DGP sing 161 n n C3' H3' DGP sing 162 n n O3' HO3' DGP sing 163 n n C2' C1' DGP sing 164 n n C2' H2' DGP sing 165 n n C2' "H2''" DGP sing 166 n n C1' N9 DGP sing 167 n n C1' H1' DGP sing 168 n n N9 C8 DGP sing 169 n y N9 C4 DGP sing 170 n y C8 N7 DGP doub 171 n y C8 H8 DGP sing 172 n n N7 C5 DGP sing 173 n y C5 C6 DGP sing 174 n n C5 C4 DGP doub 175 n y C6 O6 DGP doub 176 n n C6 N1 DGP sing 177 n n N1 C2 DGP sing 178 n n N1 HN1 DGP sing 179 n n C2 N2 DGP sing 180 n n C2 N3 DGP doub 181 n n N2 HN21 DGP sing 182 n n N2 HN22 DGP sing 183 n n N3 C4 DGP sing 184 n n # _atom_sites.entry_id 6V0L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DGP _pdbx_nonpoly_scheme.pdb_strand_id X _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 20 _pdbx_nonpoly_scheme.pdb_mon_id DGP _pdbx_nonpoly_scheme.auth_mon_id DGP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P DGP . . . B 2 27.281 25.409 16.705 1 0 ? P DGP 101 X 1 HETATM 2 O OP1 DGP . . . B 2 27.319 24.895 15.314 1 0 ? OP1 DGP 101 X 1 HETATM 3 O OP2 DGP . . . B 2 26.875 24.502 17.8 1 0 ? OP2 DGP 101 X 1 HETATM 4 O OP3 DGP . . . B 2 26.315 26.68 16.734 1 0 ? OP3 DGP 101 X 1 HETATM 5 O O5' DGP . . . B 2 28.706 26.05 17.088 1 0 ? O5' DGP 101 X 1 HETATM 6 C C5' DGP . . . B 2 29.44 26.854 16.171 1 0 ? C5' DGP 101 X 1 HETATM 7 C C4' DGP . . . B 2 30.802 27.32 16.718 1 0 ? C4' DGP 101 X 1 HETATM 8 O O4' DGP . . . B 2 30.621 28.25 17.781 1 0 ? O4' DGP 101 X 1 HETATM 9 C C3' DGP . . . B 2 31.674 26.175 17.258 1 0 ? C3' DGP 101 X 1 HETATM 10 O O3' DGP . . . B 2 33.059 26.385 17.001 1 0 ? O3' DGP 101 X 1 HETATM 11 C C2' DGP . . . B 2 31.385 26.207 18.754 1 0 ? C2' DGP 101 X 1 HETATM 12 C C1' DGP . . . B 2 31.029 27.676 19.017 1 0 ? C1' DGP 101 X 1 HETATM 13 N N9 DGP . . . B 2 29.968 27.874 20.036 1 0 ? N9 DGP 101 X 1 HETATM 14 C C8 DGP . . . B 2 28.867 27.096 20.312 1 0 ? C8 DGP 101 X 1 HETATM 15 N N7 DGP . . . B 2 28.136 27.532 21.302 1 0 ? N7 DGP 101 X 1 HETATM 16 C C5 DGP . . . B 2 28.801 28.691 21.715 1 0 ? C5 DGP 101 X 1 HETATM 17 C C6 DGP . . . B 2 28.51 29.62 22.771 1 0 ? C6 DGP 101 X 1 HETATM 18 O O6 DGP . . . B 2 27.599 29.576 23.595 1 0 ? O6 DGP 101 X 1 HETATM 19 N N1 DGP . . . B 2 29.386 30.685 22.832 1 0 ? N1 DGP 101 X 1 HETATM 20 C C2 DGP . . . B 2 30.446 30.829 22 1 0 ? C2 DGP 101 X 1 HETATM 21 N N2 DGP . . . B 2 31.215 31.87 22.166 1 0 ? N2 DGP 101 X 1 HETATM 22 N N3 DGP . . . B 2 30.782 29.973 21.036 1 0 ? N3 DGP 101 X 1 HETATM 23 C C4 DGP . . . B 2 29.91 28.921 20.932 1 0 ? C4 DGP 101 X 1 HETATM 24 H HOP3 DGP . . . B 2 26.55 27.207 15.964 1 0 ? HOP3 DGP 101 X 1 HETATM 25 H H5' DGP . . . B 2 28.857 27.738 15.909 1 0 ? H5' DGP 101 X 1 HETATM 26 H "H5''" DGP . . . B 2 29.615 26.285 15.257 1 0 ? "H5''" DGP 101 X 1 HETATM 27 H H4' DGP . . . B 2 31.329 27.813 15.902 1 0 ? H4' DGP 101 X 1 HETATM 28 H H3' DGP . . . B 2 31.369 25.216 16.833 1 0 ? H3' DGP 101 X 1 HETATM 29 H HO3' DGP . . . B 2 33.335 27.243 17.378 1 0 ? HO3' DGP 101 X 1 HETATM 30 H H2' DGP . . . B 2 30.548 25.543 18.963 1 0 ? H2' DGP 101 X 1 HETATM 31 H "H2''" DGP . . . B 2 32.244 25.897 19.348 1 0 ? "H2''" DGP 101 X 1 HETATM 32 H H1' DGP . . . B 2 31.932 28.19 19.36 1 0 ? H1' DGP 101 X 1 HETATM 33 H H8 DGP . . . B 2 28.622 26.206 19.744 1 0 ? H8 DGP 101 X 1 HETATM 34 H HN1 DGP . . . B 2 29.174 31.406 23.506 1 0 ? HN1 DGP 101 X 1 HETATM 35 H HN21 DGP . . . B 2 31.041 32.556 22.892 1 0 ? HN21 DGP 101 X 1 HETATM 36 H HN22 DGP . . . B 2 32.017 31.956 21.566 1 0 ? HN22 DGP 101 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 2409 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #