data_6V0X # _model_server_result.job_id VGGhs5VGRaWpQGE1qTJ4rw _model_server_result.datetime_utc '2025-01-11 13:54:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6V0X # _exptl.entry_id 6V0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V0X _cell.length_a 32.53 _cell.length_b 112.062 _cell.length_c 30.823 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H27 F N4 O2' _chem_comp.formula_weight 398.474 _chem_comp.id B49 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SUNITINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C14 B49 sing 70 n n C4 H4 B49 sing 71 n n C4 H4A B49 sing 72 n n C4 H4B B49 sing 73 n n C5 C6 B49 doub 74 n y C5 C15 B49 sing 75 n y C5 H5 B49 sing 76 n n C6 C16 B49 sing 77 n y C6 H6 B49 sing 78 n n C7 C15 B49 doub 79 n y C7 C17 B49 sing 80 n y C7 H7 B49 sing 81 n n C13 C3 B49 sing 82 n n C13 C18 B49 doub 83 n y C13 C19 B49 sing 84 n y C15 F29 B49 sing 85 n n C17 C20 B49 sing 86 n n C17 C16 B49 doub 87 n y C20 C21 B49 sing 88 n n C20 C12 B49 doub 89 z n C21 N24 B49 sing 90 n n C21 O27 B49 doub 91 n n C22 C19 B49 sing 92 n n C22 N25 B49 sing 93 n n C22 O28 B49 doub 94 n n C3 H3 B49 sing 95 n n C3 H3A B49 sing 96 n n C3 H3B B49 sing 97 n n C12 C18 B49 sing 98 n n C12 H12 B49 sing 99 n n C14 C19 B49 doub 100 n y C14 N23 B49 sing 101 n y C16 N24 B49 sing 102 n n C18 N23 B49 sing 103 n y N23 HN23 B49 sing 104 n n N24 HN24 B49 sing 105 n n N25 HN25 B49 sing 106 n n N25 C37 B49 sing 107 n n C37 C38 B49 sing 108 n n C38 N4 B49 sing 109 n n N4 C39 B49 sing 110 n n N4 C40 B49 sing 111 n n C40 C41 B49 sing 112 n n C39 C42 B49 sing 113 n n C37 H14 B49 sing 114 n n C37 H15 B49 sing 115 n n C38 H16 B49 sing 116 n n C38 H17 B49 sing 117 n n C39 H18 B49 sing 118 n n C39 H19 B49 sing 119 n n C40 H20 B49 sing 120 n n C40 H21 B49 sing 121 n n C41 H22 B49 sing 122 n n C41 H23 B49 sing 123 n n C41 H24 B49 sing 124 n n C42 H25 B49 sing 125 n n C42 H26 B49 sing 126 n n C42 H27 B49 sing 127 n n # _atom_sites.entry_id 6V0X _atom_sites.fract_transf_matrix[1][1] 0.03074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.032443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B49 A 1 301 1 B49 LIG . C 3 HOH A 1 401 101 HOH HOH . C 3 HOH A 2 402 62 HOH HOH . C 3 HOH A 3 403 108 HOH HOH . C 3 HOH A 4 404 107 HOH HOH . C 3 HOH A 5 405 106 HOH HOH . C 3 HOH A 6 406 45 HOH HOH . C 3 HOH A 7 407 32 HOH HOH . C 3 HOH A 8 408 29 HOH HOH . C 3 HOH A 9 409 7 HOH HOH . C 3 HOH A 10 410 71 HOH HOH . C 3 HOH A 11 411 73 HOH HOH . C 3 HOH A 12 412 104 HOH HOH . C 3 HOH A 13 413 2 HOH HOH . C 3 HOH A 14 414 33 HOH HOH . C 3 HOH A 15 415 10 HOH HOH . C 3 HOH A 16 416 92 HOH HOH . C 3 HOH A 17 417 19 HOH HOH . C 3 HOH A 18 418 59 HOH HOH . C 3 HOH A 19 419 14 HOH HOH . C 3 HOH A 20 420 17 HOH HOH . C 3 HOH A 21 421 89 HOH HOH . C 3 HOH A 22 422 48 HOH HOH . C 3 HOH A 23 423 37 HOH HOH . C 3 HOH A 24 424 4 HOH HOH . C 3 HOH A 25 425 63 HOH HOH . C 3 HOH A 26 426 30 HOH HOH . C 3 HOH A 27 427 36 HOH HOH . C 3 HOH A 28 428 25 HOH HOH . C 3 HOH A 29 429 102 HOH HOH . C 3 HOH A 30 430 8 HOH HOH . C 3 HOH A 31 431 3 HOH HOH . C 3 HOH A 32 432 43 HOH HOH . C 3 HOH A 33 433 21 HOH HOH . C 3 HOH A 34 434 18 HOH HOH . C 3 HOH A 35 435 51 HOH HOH . C 3 HOH A 36 436 97 HOH HOH . C 3 HOH A 37 437 47 HOH HOH . C 3 HOH A 38 438 9 HOH HOH . C 3 HOH A 39 439 46 HOH HOH . C 3 HOH A 40 440 12 HOH HOH . C 3 HOH A 41 441 105 HOH HOH . C 3 HOH A 42 442 6 HOH HOH . C 3 HOH A 43 443 86 HOH HOH . C 3 HOH A 44 444 24 HOH HOH . C 3 HOH A 45 445 58 HOH HOH . C 3 HOH A 46 446 22 HOH HOH . C 3 HOH A 47 447 26 HOH HOH . C 3 HOH A 48 448 49 HOH HOH . C 3 HOH A 49 449 28 HOH HOH . C 3 HOH A 50 450 13 HOH HOH . C 3 HOH A 51 451 11 HOH HOH . C 3 HOH A 52 452 100 HOH HOH . C 3 HOH A 53 453 15 HOH HOH . C 3 HOH A 54 454 93 HOH HOH . C 3 HOH A 55 455 34 HOH HOH . C 3 HOH A 56 456 42 HOH HOH . C 3 HOH A 57 457 66 HOH HOH . C 3 HOH A 58 458 5 HOH HOH . C 3 HOH A 59 459 82 HOH HOH . C 3 HOH A 60 460 74 HOH HOH . C 3 HOH A 61 461 1 HOH HOH . C 3 HOH A 62 462 20 HOH HOH . C 3 HOH A 63 463 54 HOH HOH . C 3 HOH A 64 464 16 HOH HOH . C 3 HOH A 65 465 39 HOH HOH . C 3 HOH A 66 466 52 HOH HOH . C 3 HOH A 67 467 81 HOH HOH . C 3 HOH A 68 468 67 HOH HOH . C 3 HOH A 69 469 96 HOH HOH . C 3 HOH A 70 470 27 HOH HOH . C 3 HOH A 71 471 55 HOH HOH . C 3 HOH A 72 472 31 HOH HOH . C 3 HOH A 73 473 57 HOH HOH . C 3 HOH A 74 474 83 HOH HOH . C 3 HOH A 75 475 64 HOH HOH . C 3 HOH A 76 476 38 HOH HOH . C 3 HOH A 77 477 68 HOH HOH . C 3 HOH A 78 478 35 HOH HOH . C 3 HOH A 79 479 40 HOH HOH . C 3 HOH A 80 480 98 HOH HOH . C 3 HOH A 81 481 41 HOH HOH . C 3 HOH A 82 482 88 HOH HOH . C 3 HOH A 83 483 60 HOH HOH . C 3 HOH A 84 484 76 HOH HOH . C 3 HOH A 85 485 78 HOH HOH . C 3 HOH A 86 486 23 HOH HOH . C 3 HOH A 87 487 65 HOH HOH . C 3 HOH A 88 488 87 HOH HOH . C 3 HOH A 89 489 53 HOH HOH . C 3 HOH A 90 490 79 HOH HOH . C 3 HOH A 91 491 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B49 . . . B 2 -7.775 28.383 6.684 1 28.96 ? C4 B49 301 A 1 HETATM 2 C C5 B49 . . . B 2 -4.206 22.496 -0.42 1 20.91 ? C5 B49 301 A 1 HETATM 3 C C6 B49 . . . B 2 -5.457 22.467 0.184 1 20.4 ? C6 B49 301 A 1 HETATM 4 C C7 B49 . . . B 2 -3.562 24.446 0.97 1 19.54 ? C7 B49 301 A 1 HETATM 5 C C13 B49 . . . B 2 -4.458 27.982 5.071 1 23.84 ? C13 B49 301 A 1 HETATM 6 C C15 B49 . . . B 2 -3.287 23.489 -0.009 1 22.11 ? C15 B49 301 A 1 HETATM 7 C C17 B49 . . . B 2 -4.836 24.416 1.564 1 18.81 ? C17 B49 301 A 1 HETATM 8 C C20 B49 . . . B 2 -5.464 25.263 2.63 1 22.04 ? C20 B49 301 A 1 HETATM 9 C C21 B49 . . . B 2 -6.834 24.73 2.849 1 24.42 ? C21 B49 301 A 1 HETATM 10 C C22 B49 . . . B 2 -4.826 29.616 7.094 1 35.99 ? C22 B49 301 A 1 HETATM 11 C C3 B49 . . . B 2 -2.977 28.227 4.803 1 29.36 ? C3 B49 301 A 1 HETATM 12 C C12 B49 . . . B 2 -4.803 26.262 3.202 1 23.25 ? C12 B49 301 A 1 HETATM 13 C C14 B49 . . . B 2 -6.522 28.047 5.873 1 24.54 ? C14 B49 301 A 1 HETATM 14 C C16 B49 . . . B 2 -5.741 23.419 1.168 1 20.19 ? C16 B49 301 A 1 HETATM 15 C C18 B49 . . . B 2 -5.265 27.111 4.37 1 22.37 ? C18 B49 301 A 1 HETATM 16 C C19 B49 . . . B 2 -5.256 28.586 6.022 1 27.41 ? C19 B49 301 A 1 HETATM 17 N N23 B49 . . . B 2 -6.518 27.159 4.866 1 22.25 ? N23 B49 301 A 1 HETATM 18 N N24 B49 . . . B 2 -7.008 23.611 1.959 1 22.51 ? N24 B49 301 A 1 HETATM 19 N N25 B49 . . . B 2 -3.498 29.562 7.708 1 43.51 ? N25 B49 301 A 1 HETATM 20 O O27 B49 . . . B 2 -7.701 25.112 3.588 1 23.64 ? O27 B49 301 A 1 HETATM 21 O O28 B49 . . . B 2 -5.571 30.447 7.461 1 42.94 ? O28 B49 301 A 1 HETATM 22 F F29 B49 . . . B 2 -2.06 23.52 -0.592 1 23.88 ? F29 B49 301 A 1 HETATM 23 C C37 B49 . . . B 2 -3.157 30.567 8.722 1 58.62 ? C37 B49 301 A 1 HETATM 24 C C38 B49 . . . B 2 -1.807 30.224 9.373 1 69.95 ? C38 B49 301 A 1 HETATM 25 N N4 B49 . . . B 2 -0.838 31.316 9.261 1 76.15 ? N4 B49 301 A 1 HETATM 26 C C39 B49 . . . B 2 -1.131 32.195 8.13 1 74.79 ? C39 B49 301 A 1 HETATM 27 C C40 B49 . . . B 2 0.504 30.76 9.092 1 76.66 ? C40 B49 301 A 1 HETATM 28 C C41 B49 . . . B 2 0.506 29.606 8.089 1 74.82 ? C41 B49 301 A 1 HETATM 29 C C42 B49 . . . B 2 -0.963 33.661 8.537 1 75.03 ? C42 B49 301 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #