data_6V15
#
_model_server_result.job_id            8ihwVCPSp2vqa34MCyxybg 
_model_server_result.datetime_utc      '2024-11-04 23:00:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v15 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":202}' 
#
_entry.id    6V15 
#
_exptl.entry_id    6V15 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.205 
_cell.angle_gamma         90 
_cell.entry_id            6V15 
_cell.length_a            149.995 
_cell.length_b            56.548 
_cell.length_c            136.198 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V15 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 90 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 D SG CYS 135 D CYS 149 1_555 D SG CYS 185 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 D SG CYS 160 D CYS 174 1_555 E SG CYS 168 E CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 E SG CYS 21 E CYS 23 1_555 E SG CYS 89 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 E SG CYS 142 E CYS 157 1_555 E SG CYS 207 E CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 G C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 F C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 B ND2 ASN 19 B ASN 19 1_555 I C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 C C TYR 3 C TYR 71 1_555 C N CIR 4 C CIR 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale5 C C CIR 4 C CIR 72 1_555 C N ALA 5 C ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale6 C C ALA 5 C ALA 73 1_555 C N CIR 6 C CIR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale7 C C CIR 6 C CIR 74 1_555 C N PRO 7 C PRO 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 274 n n 
C1 O1 NAG sing 275 n n 
C1 O5 NAG sing 276 n n 
C1 H1 NAG sing 277 n n 
C2 C3 NAG sing 278 n n 
C2 N2 NAG sing 279 n n 
C2 H2 NAG sing 280 n n 
C3 C4 NAG sing 281 n n 
C3 O3 NAG sing 282 n n 
C3 H3 NAG sing 283 n n 
C4 C5 NAG sing 284 n n 
C4 O4 NAG sing 285 n n 
C4 H4 NAG sing 286 n n 
C5 C6 NAG sing 287 n n 
C5 O5 NAG sing 288 n n 
C5 H5 NAG sing 289 n n 
C6 O6 NAG sing 290 n n 
C6 H61 NAG sing 291 n n 
C6 H62 NAG sing 292 n n 
C7 C8 NAG sing 293 n n 
C7 N2 NAG sing 294 n n 
C7 O7 NAG doub 295 n n 
C8 H81 NAG sing 296 n n 
C8 H82 NAG sing 297 n n 
C8 H83 NAG sing 298 n n 
N2 HN2 NAG sing 299 n n 
O1 HO1 NAG sing 300 n n 
O3 HO3 NAG sing 301 n n 
O4 HO4 NAG sing 302 n n 
O6 HO6 NAG sing 303 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6V15 
_atom_sites.fract_transf_matrix[1][1]    0.006667 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000257 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007348 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG A 1 201 181 NAG NAG . 
G 6 NAG A 1 202 182 NAG NAG . 
H 7 GOL A 1 203 301 GOL GOL . 
I 6 NAG B 1 201 189 NAG NAG . 
J 7 GOL B 1 202 201 GOL GOL . 
K 7 GOL B 1 203 202 GOL GOL . 
L 7 GOL D 1 301 315 GOL GOL . 
M 8 HOH A 1 301 39 HOH HOH . 
M 8 HOH A 2 302 41 HOH HOH . 
M 8 HOH A 3 303 42 HOH HOH . 
M 8 HOH A 4 304 36 HOH HOH . 
M 8 HOH A 5 305 19 HOH HOH . 
M 8 HOH A 6 306 7 HOH HOH . 
M 8 HOH A 7 307 40 HOH HOH . 
N 8 HOH B 1 301 10 HOH HOH . 
N 8 HOH B 2 302 20 HOH HOH . 
N 8 HOH B 3 303 31 HOH HOH . 
N 8 HOH B 4 304 15 HOH HOH . 
N 8 HOH B 5 305 51 HOH HOH . 
N 8 HOH B 6 306 50 HOH HOH . 
O 8 HOH C 1 101 49 HOH HOH . 
O 8 HOH C 2 102 44 HOH HOH . 
P 8 HOH D 1 401 30 HOH HOH . 
P 8 HOH D 2 402 5 HOH HOH . 
P 8 HOH D 3 403 45 HOH HOH . 
P 8 HOH D 4 404 27 HOH HOH . 
P 8 HOH D 5 405 35 HOH HOH . 
P 8 HOH D 6 406 47 HOH HOH . 
P 8 HOH D 7 407 18 HOH HOH . 
P 8 HOH D 8 408 26 HOH HOH . 
P 8 HOH D 9 409 34 HOH HOH . 
Q 8 HOH E 1 301 14 HOH HOH . 
Q 8 HOH E 2 302 16 HOH HOH . 
Q 8 HOH E 3 303 1 HOH HOH . 
Q 8 HOH E 4 304 21 HOH HOH . 
Q 8 HOH E 5 305 8 HOH HOH . 
Q 8 HOH E 6 306 29 HOH HOH . 
Q 8 HOH E 7 307 11 HOH HOH . 
Q 8 HOH E 8 308 25 HOH HOH . 
Q 8 HOH E 9 309 43 HOH HOH . 
Q 8 HOH E 10 310 37 HOH HOH . 
Q 8 HOH E 11 311 12 HOH HOH . 
Q 8 HOH E 12 312 2 HOH HOH . 
Q 8 HOH E 13 313 24 HOH HOH . 
Q 8 HOH E 14 314 28 HOH HOH . 
Q 8 HOH E 15 315 46 HOH HOH . 
Q 8 HOH E 16 316 32 HOH HOH . 
Q 8 HOH E 17 317 33 HOH HOH . 
Q 8 HOH E 18 318 6 HOH HOH . 
Q 8 HOH E 19 319 22 HOH HOH . 
Q 8 HOH E 20 320 48 HOH HOH . 
Q 8 HOH E 21 321 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 6 49.1 -12.978 164.712 1 93.86 ? C1 NAG 202 A 1 
HETATM 2 C C2 NAG . . . G 6 50.034 -13.733 165.685 1 104.46 ? C2 NAG 202 A 1 
HETATM 3 C C3 NAG . . . G 6 51.314 -12.933 165.946 1 103.99 ? C3 NAG 202 A 1 
HETATM 4 C C4 NAG . . . G 6 51.974 -12.52 164.638 1 94.24 ? C4 NAG 202 A 1 
HETATM 5 C C5 NAG . . . G 6 50.972 -11.762 163.778 1 87.24 ? C5 NAG 202 A 1 
HETATM 6 C C6 NAG . . . G 6 51.529 -11.365 162.43 1 89.87 ? C6 NAG 202 A 1 
HETATM 7 C C7 NAG . . . G 6 48.925 -13.136 167.819 1 119.57 ? C7 NAG 202 A 1 
HETATM 8 C C8 NAG . . . G 6 48.266 -13.679 169.051 1 103.66 ? C8 NAG 202 A 1 
HETATM 9 N N2 NAG . . . G 6 49.362 -14.049 166.939 1 114.65 ? N2 NAG 202 A 1 
HETATM 10 O O3 NAG . . . G 6 52.214 -13.72 166.718 1 115.83 ? O3 NAG 202 A 1 
HETATM 11 O O4 NAG . . . G 6 53.097 -11.686 164.9 1 98.06 ? O4 NAG 202 A 1 
HETATM 12 O O5 NAG . . . G 6 49.834 -12.598 163.528 1 90.57 ? O5 NAG 202 A 1 
HETATM 13 O O6 NAG . . . G 6 50.593 -10.597 161.687 1 84.38 ? O6 NAG 202 A 1 
HETATM 14 O O7 NAG . . . G 6 49.041 -11.927 167.626 1 131.11 ? O7 NAG 202 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#